Wall clock time and date at job start Thu Apr 8 2021 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.53004 * 109.46915 * 124.99991 * 3 2 1 5 5 C 1.53009 * 109.46775 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46939 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00036 * 89.99949 * 6 5 4 8 8 C 1.50697 * 109.47368 * 89.99860 * 7 6 5 9 9 C 1.38211 * 120.00237 * 270.27638 * 8 7 6 10 10 C 1.38260 * 120.00189 * 179.97438 * 9 8 7 11 11 C 1.38211 * 119.99824 * 359.97438 * 10 9 8 12 12 C 1.38261 * 119.99991 * 359.97438 * 11 10 9 13 Xx 1.81007 * 119.99700 * 179.97438 * 12 11 10 14 13 F 9.67700 * 165.71794 * 148.67020 * 4 1 2 15 14 F 1.60997 * 90.00127 * 315.00065 * 13 12 11 16 15 F 1.61006 * 89.99706 * 134.99970 * 13 12 11 17 16 F 1.60997 * 89.99930 * 45.00061 * 13 12 11 18 17 F 1.61003 * 89.99699 * 224.99783 * 13 12 11 19 18 C 1.38207 * 120.00151 * 359.81719 * 12 11 10 20 19 C 1.34776 * 119.99785 * 270.00258 * 6 5 4 21 20 O 1.21279 * 119.99654 * 180.02562 * 20 6 5 22 21 C 1.50693 * 120.00082 * 359.97438 * 20 6 5 23 22 C 1.53003 * 109.47188 * 180.02562 * 22 20 6 24 23 Si 1.86300 * 109.47202 * 179.97438 * 23 22 20 25 24 H 1.48494 * 109.47645 * 300.00325 * 24 23 22 26 25 H 1.48498 * 109.46779 * 60.00228 * 24 23 22 27 26 H 1.48501 * 109.47059 * 179.97438 * 24 23 22 28 27 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 29 28 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 30 29 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 31 30 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 32 31 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 33 32 H 1.08998 * 109.47237 * 299.99538 * 4 3 2 34 33 H 1.08998 * 109.46722 * 60.00211 * 4 3 2 35 34 H 1.08998 * 109.46950 * 299.99823 * 5 4 3 36 35 H 1.08997 * 109.47255 * 60.00079 * 5 4 3 37 36 H 1.09007 * 109.47373 * 210.00299 * 7 6 5 38 37 H 1.09008 * 109.47043 * 329.99809 * 7 6 5 39 38 H 1.08002 * 119.99571 * 359.97438 * 9 8 7 40 39 H 1.07996 * 119.99963 * 179.97438 * 10 9 8 41 40 H 1.07999 * 119.99948 * 179.97438 * 11 10 9 42 41 H 1.07997 * 120.00336 * 179.97438 * 19 12 11 43 42 H 1.09005 * 109.47542 * 300.00098 * 22 20 6 44 43 H 1.08999 * 109.47791 * 60.00401 * 22 20 6 45 44 H 1.08996 * 109.47204 * 299.99946 * 23 22 20 46 45 H 1.09000 * 109.46842 * 60.00202 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6578 1.1813 6 7 4.7313 2.6843 2.3124 7 6 6.0962 2.1776 2.1499 8 6 6.9990 3.2995 1.7060 9 6 7.1745 3.5536 0.3588 10 6 8.0024 4.5832 -0.0485 11 6 8.6543 5.3588 0.8916 12 6 8.4780 5.1053 2.2393 13 9 10.0907 7.0245 4.5684 14 9 10.6927 6.0116 2.6164 15 9 7.9717 6.2297 4.3244 16 9 8.9274 7.4490 2.6558 17 9 9.7370 4.7922 4.2850 18 6 7.6470 4.0788 2.6465 19 6 4.3317 3.1749 3.5024 20 8 5.1024 3.1973 4.4386 21 6 2.9279 3.6966 3.6694 22 6 2.7350 4.1917 5.1042 23 14 0.9997 4.8374 5.3104 24 1 0.7735 5.9598 4.3648 25 1 0.0298 3.7490 5.0277 26 1 0.8124 5.3173 6.7031 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9352 -0.0044 29 1 1.8499 -0.9354 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3586 2.1316 0.0896 32 1 2.4773 1.2355 2.1130 33 1 3.7399 0.5064 1.0920 34 1 4.3584 2.7548 0.2499 35 1 3.0959 3.4846 1.2706 36 1 6.4516 1.7796 3.1004 37 1 6.1033 1.3869 1.3996 38 1 6.6647 2.9477 -0.3758 39 1 8.1398 4.7814 -1.1012 40 1 9.3014 6.1628 0.5735 41 1 7.5095 3.8805 3.6992 42 1 2.7615 4.5208 2.9756 43 1 2.2161 2.8976 3.4617 44 1 2.9014 3.3679 5.7982 45 1 3.4467 4.9909 5.3115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18171696_18164856_13179792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 8 2021 11:50:26 Heat of formation + Delta-G solvation = 379.897405 kcal Electronic energy + Delta-G solvation = -32744.322095 eV Core-core repulsion = 27511.736870 eV Total energy + Delta-G solvation = -5232.585225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.144 amu Computer time = 21.54 seconds Orbital eigenvalues (eV) -44.65542 -44.36605 -44.01311 -43.78528 -43.57664 -41.62526 -40.52371 -37.66821 -36.05977 -34.25592 -33.08511 -32.40846 -31.67437 -28.20617 -26.75524 -24.74510 -23.93070 -22.77049 -22.54467 -20.64713 -19.85836 -18.35253 -18.06914 -17.39903 -16.95671 -16.84320 -16.19313 -15.97144 -15.68131 -15.39979 -15.33763 -15.23882 -15.11903 -14.95376 -14.84501 -14.63702 -14.50725 -14.36044 -14.26666 -14.16275 -14.08005 -14.02059 -13.62395 -13.49353 -13.45214 -13.36178 -13.24830 -13.23433 -13.05168 -12.69240 -12.60205 -12.56818 -12.52307 -12.30020 -12.12532 -12.02434 -11.73760 -11.68203 -11.52210 -11.40383 -11.17733 -10.93415 -10.73815 -10.46538 -10.16276 -9.74604 -5.35335 -4.89251 -2.97354 -0.67186 -0.49026 1.44288 1.49991 1.59569 1.62231 1.64289 1.79294 2.06950 2.30726 2.69082 2.98786 3.41032 3.50908 3.66966 3.70781 3.89354 4.00558 4.05540 4.11449 4.19558 4.29719 4.36233 4.41436 4.51448 4.61238 4.65058 4.67064 4.70777 4.74151 4.77079 4.86158 4.93841 4.97309 5.12638 5.15523 5.17240 5.26205 5.35790 5.52344 5.59989 5.89539 6.00362 6.32007 7.18399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.131 4.131 5 C 0.098 3.902 6 N -0.607 5.607 7 C 0.149 3.851 8 C -0.047 4.047 9 C -0.058 4.058 10 C -0.035 4.035 11 C -0.117 4.117 12 C 0.339 3.661 13 F -0.084 7.084 14 F -0.200 7.200 15 F -0.260 7.260 16 F -0.216 7.216 17 F -0.124 7.124 18 C -0.115 4.115 19 C 0.508 3.492 20 O -0.576 6.576 21 C -0.136 4.136 22 C -0.339 4.339 23 Si 1.008 2.992 24 H -0.266 1.266 25 H -0.260 1.260 26 H -0.294 1.294 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.225 0.775 39 H 0.228 0.772 40 H 0.179 0.821 41 H 0.152 0.848 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -9.355 -16.393 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.176 4.176 3 C -0.127 4.127 4 C -0.170 4.170 5 C -0.023 4.023 6 N -0.339 5.339 7 C 0.027 3.973 8 C -0.049 4.049 9 C -0.076 4.076 10 C -0.052 4.052 11 C -0.135 4.135 12 C 0.334 3.666 13 F -0.084 7.084 14 F -0.198 7.198 15 F -0.259 7.259 16 F -0.215 7.215 17 F -0.124 7.124 18 C -0.133 4.133 19 C 0.298 3.702 20 O -0.455 6.455 21 C -0.175 4.175 22 C -0.432 4.432 23 Si 0.836 3.164 24 H -0.190 1.190 25 H -0.184 1.184 26 H -0.220 1.220 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.241 0.759 39 H 0.245 0.755 40 H 0.196 0.804 41 H 0.169 0.831 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.770 -9.057 -15.819 20.229 hybrid contribution 1.344 0.928 2.139 2.691 sum -7.427 -8.129 -13.680 17.561 Atomic orbital electron populations 1.24001 0.96741 1.01975 1.02327 1.23168 0.95913 0.99660 0.98880 1.20711 0.98177 0.94563 0.99278 1.21946 0.98339 0.98321 0.98392 1.22097 0.92649 0.98484 0.89089 1.48147 1.12098 1.62074 1.11536 1.20695 0.79351 0.92048 1.05228 1.20838 0.96104 0.96511 0.91435 1.22408 0.94579 0.95888 0.94684 1.22199 0.92125 0.91196 0.99686 1.22388 1.02754 1.03963 0.84384 1.27637 0.93512 0.79976 0.65432 1.99964 1.61844 1.99633 1.46948 1.99933 1.92419 1.74780 1.52688 1.99927 1.40848 1.90011 1.95101 1.99913 1.74604 1.95845 1.51135 1.99949 1.42249 1.99665 1.70500 1.21972 0.94116 0.92102 1.05131 1.21329 0.90512 0.76361 0.81984 1.90742 1.56843 1.56566 1.41335 1.21605 0.93554 1.04003 0.98378 1.25073 1.12995 1.06104 0.98991 0.84461 0.74547 0.78946 0.78453 1.19005 1.18387 1.21973 0.88267 0.89273 0.87393 0.88768 0.90917 0.92700 0.90483 0.85963 0.88679 0.90000 0.82401 0.75889 0.75519 0.80368 0.83099 0.86166 0.86040 0.90112 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 507. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 1.35 14.32 67.78 0.97 2.32 16 2 C -0.16 1.45 9.52 25.64 0.24 1.69 16 3 C -0.09 1.35 5.66 29.85 0.17 1.52 16 4 C -0.13 2.15 5.52 30.60 0.17 2.32 16 5 C 0.10 -1.85 5.21 86.38 0.45 -1.40 16 6 N -0.61 7.01 2.46 -826.15 -2.03 4.98 16 7 C 0.15 -2.02 5.53 85.63 0.47 -1.55 16 8 C -0.05 0.58 5.46 -19.87 -0.11 0.47 16 9 C -0.06 1.25 9.70 22.27 0.22 1.47 16 10 C -0.04 0.68 10.05 22.27 0.22 0.91 16 11 C -0.12 0.81 8.62 22.27 0.19 1.00 16 12 C 0.34 1.17 4.82 22.27 0.11 1.28 16 13 F -0.08 -2.27 16.68 44.97 0.75 -1.52 16 14 F -0.20 -3.60 15.32 44.97 0.69 -2.91 16 15 F -0.26 -6.24 15.30 44.97 0.69 -5.55 16 16 F -0.22 -4.33 15.31 44.97 0.69 -3.65 16 17 F -0.12 -2.49 15.32 44.97 0.69 -1.80 16 18 C -0.11 0.05 8.28 22.27 0.18 0.23 16 19 C 0.51 -1.20 7.67 87.66 0.67 -0.52 16 20 O -0.58 -4.77 15.10 -3.03 -0.05 -4.82 16 21 C -0.14 0.88 3.62 29.85 0.11 0.99 16 22 C -0.34 0.35 3.74 71.98 0.27 0.62 16 23 Si 1.01 -1.71 29.30 68.60 2.01 0.30 16 24 H -0.27 0.26 7.11 99.48 0.71 0.96 16 25 H -0.26 0.49 7.11 99.48 0.71 1.19 16 26 H -0.29 -1.20 7.11 99.48 0.71 -0.49 16 27 H 0.10 -0.72 7.84 -2.91 -0.02 -0.74 16 28 H 0.09 -0.47 8.06 -2.91 -0.02 -0.50 16 29 H 0.11 -1.02 8.06 -2.91 -0.02 -1.04 16 30 H 0.09 -1.72 8.14 -2.39 -0.02 -1.74 16 31 H 0.07 -1.09 7.79 -2.39 -0.02 -1.10 16 32 H 0.05 -0.68 7.22 -2.39 -0.02 -0.70 16 33 H 0.08 -1.30 8.14 -2.39 -0.02 -1.32 16 34 H 0.12 -3.18 8.06 -2.39 -0.02 -3.20 16 35 H 0.09 -1.86 6.44 -2.39 -0.02 -1.87 16 36 H 0.08 -0.59 7.37 -2.38 -0.02 -0.60 16 37 H 0.16 -3.64 8.02 -2.38 -0.02 -3.66 16 38 H 0.22 -7.20 8.05 -2.91 -0.02 -7.22 16 39 H 0.23 -6.42 8.06 -2.91 -0.02 -6.44 16 40 H 0.18 -1.11 7.40 -2.91 -0.02 -1.13 16 41 H 0.15 1.06 6.93 -2.91 -0.02 1.04 16 42 H 0.12 -1.36 7.23 -2.38 -0.02 -1.38 16 43 H 0.12 -1.37 7.01 -2.39 -0.02 -1.38 16 44 H 0.08 0.07 7.92 -2.39 -0.02 0.05 16 45 H 0.07 0.21 7.92 -2.39 -0.02 0.19 16 Total: 0.00 -44.22 399.49 9.53 -34.69 By element: Atomic # 1 Polarization: -32.83 SS G_CDS: 1.74 Total: -31.09 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 4.34 Total: 11.35 kcal Atomic # 7 Polarization: 7.01 SS G_CDS: -2.03 Total: 4.98 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.05 Total: -4.82 kcal Atomic # 9 Polarization: -18.93 SS G_CDS: 3.50 Total: -15.42 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: 2.01 Total: 0.30 kcal Total: -44.22 9.53 -34.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18171696_18164856_13179792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 414.588 kcal (2) G-P(sol) polarization free energy of solvation -44.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 370.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 379.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.54 seconds