Wall clock time and date at job start Thu Apr 8 2021 16:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81393 * 103.00124 * 2 1 4 4 C 1.81397 * 103.00196 * 106.87440 * 2 1 3 5 5 C 1.53003 * 109.47184 * 73.12228 * 4 2 1 6 6 C 1.53000 * 109.47097 * 180.02562 * 5 4 2 7 7 O 1.42894 * 109.47394 * 65.00347 * 6 5 4 8 8 C 1.50702 * 109.46987 * 185.00324 * 6 5 4 9 9 O 1.21285 * 119.99894 * 244.99537 * 8 6 5 10 10 N 1.34771 * 120.00133 * 64.99784 * 8 6 5 11 11 C 1.46504 * 120.00004 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.46952 * 179.97438 * 11 10 8 13 13 C 1.34645 * 126.12395 * 80.00904 * 12 11 10 14 14 C 1.51042 * 127.90949 * 359.44797 * 13 12 11 15 15 N 1.47501 * 106.99693 * 169.62222 * 14 13 12 16 16 C 1.34780 * 121.01612 * 222.99523 * 15 14 13 17 17 O 1.21285 * 119.99698 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99986 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.46811 * 179.97438 * 18 16 15 20 20 Si 1.86300 * 109.46806 * 179.97438 * 19 18 16 21 21 H 1.48508 * 109.47014 * 60.00205 * 20 19 18 22 22 H 1.48503 * 109.47384 * 179.97438 * 20 19 18 23 23 H 1.48492 * 109.47326 * 300.00420 * 20 19 18 24 24 C 1.47080 * 117.96868 * 42.97482 * 15 14 13 25 25 C 1.53259 * 109.22829 * 296.42613 * 24 15 14 26 26 N 1.35315 * 108.06761 * 179.72862 * 13 12 11 27 27 N 1.39751 * 107.74535 * 0.24859 * 26 13 12 28 28 C 1.31003 * 108.18124 * 359.71085 * 27 26 13 29 29 H 1.08998 * 109.47184 * 313.12904 * 1 2 3 30 30 H 1.09000 * 109.47167 * 73.12590 * 1 2 3 31 31 H 1.08995 * 109.47323 * 193.12673 * 1 2 3 32 32 H 1.09006 * 109.47006 * 166.87726 * 3 2 1 33 33 H 1.09002 * 109.47551 * 286.87144 * 3 2 1 34 34 H 1.08993 * 109.47143 * 46.87127 * 3 2 1 35 35 H 1.09007 * 109.47031 * 313.12982 * 4 2 1 36 36 H 1.08990 * 109.47477 * 193.12741 * 4 2 1 37 37 H 1.08996 * 109.47134 * 60.00111 * 5 4 2 38 38 H 1.09001 * 109.47005 * 300.00251 * 5 4 2 39 39 H 1.08999 * 109.46913 * 305.00205 * 6 5 4 40 40 H 0.96701 * 114.00023 * 59.99707 * 7 6 5 41 41 H 0.97000 * 120.00240 * 0.02562 * 10 8 6 42 42 H 1.09000 * 109.46766 * 60.00682 * 11 10 8 43 43 H 1.08992 * 109.47255 * 299.99822 * 11 10 8 44 44 H 1.08993 * 109.95095 * 289.00546 * 14 13 12 45 45 H 1.09002 * 109.94573 * 50.25805 * 14 13 12 46 46 H 1.08994 * 109.47134 * 299.99783 * 18 16 15 47 47 H 1.08998 * 109.46996 * 60.00351 * 18 16 15 48 48 H 1.08994 * 109.47191 * 299.99867 * 19 18 16 49 49 H 1.08998 * 109.46957 * 60.00445 * 19 18 16 50 50 H 1.08999 * 109.51031 * 176.49969 * 24 15 14 51 51 H 1.09000 * 109.55664 * 56.38010 * 24 15 14 52 52 H 1.09002 * 109.50435 * 286.02775 * 25 24 15 53 53 H 1.08998 * 109.51072 * 165.89107 * 25 24 15 54 54 H 1.08003 * 125.86956 * 180.15271 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 2.2221 -0.5131 1.6914 5 6 1.9288 -2.0056 1.8564 6 6 2.2724 -2.4382 3.2832 7 8 1.4017 -1.7779 4.2039 8 6 2.1006 -3.9299 3.4109 9 8 1.2473 -4.3813 4.1452 10 7 2.8951 -4.7623 2.7094 11 6 2.7284 -6.2125 2.8340 12 6 3.7313 -6.9110 1.9524 13 6 5.0294 -7.1230 2.2403 14 6 5.7835 -6.7123 3.4829 15 7 7.0943 -7.3869 3.4345 16 6 7.6205 -7.9618 4.5340 17 8 7.0148 -7.9290 5.5843 18 6 8.9614 -8.6455 4.4585 19 6 9.3247 -9.2090 5.8337 20 14 10.9820 -10.0548 5.7401 21 1 12.0148 -9.0747 5.3182 22 1 11.3350 -10.6013 7.0751 23 1 10.9176 -11.1620 4.7527 24 6 7.8094 -7.4133 2.1495 25 6 6.9877 -8.2108 1.1309 26 7 5.5873 -7.7848 1.2002 27 7 4.5935 -7.9799 0.2372 28 6 3.4793 -7.4590 0.6882 29 1 -0.3633 0.7025 0.7500 30 1 -0.3633 0.2983 -0.9834 31 1 -0.3634 -1.0007 0.2334 32 1 3.2790 1.8963 0.2333 33 1 2.0132 2.1886 -0.9834 34 1 1.6193 2.2795 0.7500 35 1 1.6192 0.0561 2.3991 36 1 3.2789 -0.3271 1.8825 37 1 2.5315 -2.5747 1.1487 38 1 0.8719 -2.1915 1.6653 39 1 3.3057 -2.1711 3.5049 40 1 0.4642 -1.9699 4.0655 41 1 3.5778 -4.4013 2.1224 42 1 1.7200 -6.4899 2.5270 43 1 2.8871 -6.5087 3.8708 44 1 5.9216 -5.6312 3.4937 45 1 5.2359 -7.0271 4.3712 46 1 8.9147 -9.4578 3.7333 47 1 9.7193 -7.9256 4.1494 48 1 9.3716 -8.3963 6.5586 49 1 8.5669 -9.9287 6.1432 50 1 8.7819 -7.8871 2.2837 51 1 7.9478 -6.3944 1.7879 52 1 7.0564 -9.2742 1.3604 53 1 7.3745 -8.0284 0.1283 54 1 2.5299 -7.4523 0.1734 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275592_15865230_15845374_18081600.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 8 2021 16:00:33 Heat of formation + Delta-G solvation = 55.007411 kcal Electronic energy + Delta-G solvation = -34111.415796 eV Core-core repulsion = 29602.575273 eV Total energy + Delta-G solvation = -4508.840523 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 385.187 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.83716 -41.16210 -40.86867 -38.09222 -37.63090 -36.29678 -34.52035 -34.01005 -33.85694 -32.31925 -31.19832 -30.79295 -29.79711 -28.83392 -27.75849 -26.39883 -24.80900 -24.38903 -23.66763 -22.22108 -21.71246 -20.80338 -19.64818 -19.27615 -18.39925 -18.21470 -17.86630 -17.78062 -17.28956 -17.27037 -16.75339 -16.67753 -16.30920 -16.23836 -15.79278 -15.66416 -15.49734 -15.39393 -15.29427 -15.15567 -14.96148 -14.85375 -14.52183 -14.34917 -14.21157 -14.09040 -14.02321 -13.80945 -13.67290 -13.40264 -13.25572 -13.18853 -13.14595 -13.00457 -12.92735 -12.75004 -12.42425 -12.38660 -12.04621 -11.86914 -11.75461 -11.66483 -11.56915 -11.08844 -10.86854 -10.78665 -10.38859 -10.19405 -10.10657 -9.56225 -0.97303 0.25951 0.36106 0.64584 1.20794 1.44211 1.46334 1.49439 1.50942 1.61386 1.65920 1.83936 2.15719 2.29002 3.06709 3.18494 3.28003 3.40735 3.55079 3.58629 3.64368 3.78333 3.88690 3.89042 3.90168 3.95869 3.96217 4.00268 4.02080 4.03750 4.10582 4.12087 4.17443 4.25926 4.32984 4.35276 4.44510 4.45342 4.62924 4.65702 4.69366 4.73944 4.76105 4.77620 4.86028 4.90194 4.92506 4.93539 5.17830 5.31227 5.37335 5.53123 5.80849 6.12084 6.37475 6.59050 6.61120 6.99168 7.17364 Molecular weight = 385.19amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.001815 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.043455 B =15419.728385 C =15766.397166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.709 5.291 3 C -0.321 4.321 4 C -0.276 4.276 5 C -0.148 4.148 6 C 0.105 3.895 7 O -0.556 6.556 8 C 0.475 3.525 9 O -0.583 6.583 10 N -0.703 5.703 11 C 0.205 3.795 12 C -0.249 4.249 13 C 0.091 3.909 14 C 0.177 3.823 15 N -0.627 5.627 16 C 0.518 3.482 17 O -0.576 6.576 18 C -0.136 4.136 19 C -0.335 4.335 20 Si 1.009 2.991 21 H -0.260 1.260 22 H -0.297 1.297 23 H -0.269 1.269 24 C 0.094 3.906 25 C 0.104 3.896 26 N -0.367 5.367 27 N -0.320 5.320 28 C 0.066 3.934 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.172 0.828 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.393 0.607 41 H 0.418 0.582 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.134 0.866 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.145 0.855 51 H 0.113 0.887 52 H 0.085 0.915 53 H 0.127 0.873 54 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 28.463 -19.433 35.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.494 4.494 2 S 1.044 4.956 3 C -0.487 4.487 4 C -0.421 4.421 5 C -0.187 4.187 6 C 0.041 3.959 7 O -0.363 6.363 8 C 0.261 3.739 9 O -0.463 6.463 10 N -0.357 5.357 11 C 0.081 3.919 12 C -0.262 4.262 13 C -0.040 4.040 14 C 0.053 3.947 15 N -0.361 5.361 16 C 0.309 3.691 17 O -0.454 6.454 18 C -0.175 4.175 19 C -0.428 4.428 20 Si 0.838 3.162 21 H -0.184 1.184 22 H -0.223 1.223 23 H -0.194 1.194 24 C -0.029 4.029 25 C -0.017 4.017 26 N -0.149 5.149 27 N -0.139 5.139 28 C -0.120 4.120 29 H 0.147 0.853 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.190 0.810 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.169 0.831 40 H 0.243 0.757 41 H 0.255 0.745 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.138 0.862 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.152 0.848 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.163 0.837 51 H 0.131 0.869 52 H 0.104 0.896 53 H 0.145 0.855 54 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.643 26.703 -20.025 33.851 hybrid contribution -2.167 0.774 2.021 3.063 sum -7.810 27.477 -18.004 33.766 Atomic orbital electron populations 1.26113 0.97525 1.12818 1.12984 1.78863 1.02293 1.05346 1.09098 1.26053 1.12218 0.97524 1.12900 1.25920 1.13114 1.01922 1.01188 1.22289 1.06387 0.93665 0.96327 1.21965 0.98325 0.85138 0.90494 1.86651 1.22291 1.69262 1.58067 1.22300 0.80846 0.91512 0.79222 1.90824 1.36685 1.78961 1.39809 1.46059 1.37547 1.05781 1.46313 1.19218 0.96675 0.79260 0.96783 1.19441 0.93332 1.14459 0.98963 1.21192 0.94189 0.97068 0.91536 1.20413 0.82375 0.98802 0.93070 1.48405 1.20300 1.56641 1.10778 1.21421 0.88495 0.76973 0.82252 1.90743 1.63600 1.60211 1.30871 1.21648 0.93506 1.02632 0.99754 1.25020 1.11789 1.06741 0.99211 0.84421 0.75102 0.78315 0.78389 1.18446 1.22327 1.19399 1.22468 0.96534 1.03691 0.80225 1.22545 0.74974 1.00581 1.03603 1.48785 1.10018 1.43672 1.12474 1.77438 0.97551 1.24653 1.14295 1.24306 0.97792 0.95726 0.94216 0.85257 0.82767 0.83426 0.82833 0.82790 0.85384 0.84467 0.81035 0.85260 0.88055 0.83113 0.75670 0.74473 0.90493 0.93019 0.86233 0.89090 0.85893 0.84782 0.89776 0.90497 0.83704 0.86909 0.89648 0.85502 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 19.68 10.35 113.37 1.17 20.85 16 2 S 0.71 -44.89 14.02 -56.49 -0.79 -45.68 16 3 C -0.32 19.54 10.39 113.37 1.18 20.72 16 4 C -0.28 16.16 5.48 71.98 0.39 16.56 16 5 C -0.15 7.67 4.85 30.60 0.15 7.82 16 6 C 0.11 -4.12 3.38 29.85 0.10 -4.02 16 7 O -0.56 17.77 12.53 -129.99 -1.63 16.14 16 8 C 0.47 -13.26 7.17 87.66 0.63 -12.63 16 9 O -0.58 8.31 16.32 15.94 0.26 8.57 16 10 N -0.70 21.95 5.45 -466.79 -2.54 19.40 16 11 C 0.21 -4.74 5.95 85.63 0.51 -4.23 16 12 C -0.25 5.52 5.46 -20.24 -0.11 5.41 16 13 C 0.09 -1.89 6.71 41.31 0.28 -1.61 16 14 C 0.18 -3.78 6.52 85.55 0.56 -3.22 16 15 N -0.63 13.56 2.97 -820.95 -2.44 11.12 16 16 C 0.52 -8.04 7.71 87.66 0.68 -7.37 16 17 O -0.58 2.82 15.53 -3.05 -0.05 2.77 16 18 C -0.14 2.96 3.43 29.85 0.10 3.06 16 19 C -0.34 5.41 3.74 71.98 0.27 5.68 16 20 Si 1.01 -15.37 29.30 68.60 2.01 -13.36 16 21 H -0.26 3.96 7.11 99.48 0.71 4.67 16 22 H -0.30 2.53 7.11 99.48 0.71 3.24 16 23 H -0.27 3.73 7.11 99.48 0.71 4.43 16 24 C 0.09 -2.77 6.34 86.36 0.55 -2.22 16 25 C 0.10 -2.64 7.44 86.46 0.64 -1.99 16 26 N -0.37 7.11 4.03 -334.04 -1.35 5.77 16 27 N -0.32 5.00 12.61 -56.80 -0.72 4.28 16 28 C 0.07 -1.36 11.97 85.26 1.02 -0.34 16 29 H 0.13 -7.68 8.14 -2.39 -0.02 -7.70 16 30 H 0.15 -9.21 8.14 -2.39 -0.02 -9.23 16 31 H 0.15 -8.77 7.52 -2.39 -0.02 -8.79 16 32 H 0.15 -9.39 8.14 -2.39 -0.02 -9.41 16 33 H 0.15 -9.32 8.14 -2.39 -0.02 -9.33 16 34 H 0.13 -7.70 8.14 -2.39 -0.02 -7.72 16 35 H 0.14 -7.85 7.82 -2.39 -0.02 -7.87 16 36 H 0.17 -10.54 8.14 -2.40 -0.02 -10.56 16 37 H 0.13 -7.25 7.77 -2.39 -0.02 -7.27 16 38 H 0.10 -5.35 7.50 -2.39 -0.02 -5.36 16 39 H 0.15 -6.48 8.14 -2.39 -0.02 -6.50 16 40 H 0.39 -13.62 8.79 -74.06 -0.65 -14.27 16 41 H 0.42 -16.20 8.17 -92.71 -0.76 -16.96 16 42 H 0.08 -1.67 8.14 -2.39 -0.02 -1.69 16 43 H 0.05 -0.89 8.14 -2.39 -0.02 -0.91 16 44 H 0.12 -3.26 8.14 -2.39 -0.02 -3.28 16 45 H 0.09 -1.36 7.24 -2.39 -0.02 -1.38 16 46 H 0.12 -3.25 7.72 -2.39 -0.02 -3.27 16 47 H 0.13 -3.81 7.59 -2.39 -0.02 -3.83 16 48 H 0.08 -1.20 7.92 -2.39 -0.02 -1.22 16 49 H 0.08 -0.99 7.92 -2.39 -0.02 -1.01 16 50 H 0.15 -5.03 5.96 -2.39 -0.01 -5.04 16 51 H 0.11 -3.79 8.14 -2.39 -0.02 -3.81 16 52 H 0.09 -2.03 8.14 -2.39 -0.02 -2.05 16 53 H 0.13 -3.62 8.14 -2.39 -0.02 -3.64 16 54 H 0.21 -5.37 8.06 -2.91 -0.02 -5.40 16 Total: 1.00 -94.81 446.81 1.13 -93.68 By element: Atomic # 1 Polarization: -145.43 SS G_CDS: 0.26 Total: -145.17 kcal Atomic # 6 Polarization: 34.36 SS G_CDS: 8.12 Total: 42.48 kcal Atomic # 7 Polarization: 47.62 SS G_CDS: -7.05 Total: 40.57 kcal Atomic # 8 Polarization: 28.90 SS G_CDS: -1.42 Total: 27.49 kcal Atomic # 14 Polarization: -15.37 SS G_CDS: 2.01 Total: -13.36 kcal Atomic # 16 Polarization: -44.89 SS G_CDS: -0.79 Total: -45.68 kcal Total: -94.81 1.13 -93.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275592_15865230_15845374_18081600.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.686 kcal (2) G-P(sol) polarization free energy of solvation -94.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds