Wall clock time and date at job start Fri Apr 9 2021 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21277 * 1 3 3 C 1.50698 * 120.00316 * 2 1 4 4 C 1.53004 * 109.46928 * 354.90975 * 3 2 1 5 5 Si 1.86306 * 109.47049 * 179.97438 * 4 3 2 6 6 H 1.48503 * 109.47015 * 179.97438 * 5 4 3 7 7 H 1.48495 * 109.46857 * 299.99604 * 5 4 3 8 8 H 1.48495 * 109.46957 * 59.99845 * 5 4 3 9 9 N 1.34779 * 119.99951 * 179.73323 * 2 1 3 10 10 C 1.46503 * 120.00033 * 185.33056 * 9 2 1 11 11 C 1.50700 * 109.46850 * 95.30131 * 10 9 2 12 12 C 1.38211 * 120.00097 * 265.03253 * 11 10 9 13 13 C 1.38260 * 120.00549 * 180.02562 * 12 11 10 14 Xx 1.80989 * 120.00335 * 179.97438 * 13 12 11 15 14 F 7.18626 * 121.95615 * 68.03016 * 2 1 3 16 15 F 1.61004 * 90.00187 * 134.99911 * 14 13 12 17 16 F 1.60996 * 90.00259 * 315.00229 * 14 13 12 18 17 F 1.61000 * 90.00120 * 224.99951 * 14 13 12 19 18 F 1.60997 * 90.00092 * 45.00207 * 14 13 12 20 19 C 1.38221 * 119.99184 * 359.96180 * 13 12 11 21 20 C 1.38248 * 120.00257 * 0.02562 * 20 13 12 22 21 C 1.38209 * 120.00161 * 359.77932 * 21 20 13 23 22 C 1.46497 * 119.99887 * 5.32642 * 9 2 1 24 23 C 1.53006 * 109.47052 * 90.00409 * 23 9 2 25 24 O 1.44380 * 110.11083 * 303.25506 * 24 23 9 26 25 C 1.44844 * 103.23085 * 158.39809 * 25 24 23 27 26 C 1.54448 * 102.89787 * 323.38766 * 26 25 24 28 27 O 1.43779 * 110.11035 * 59.99900 * 24 23 9 29 28 H 1.08997 * 109.46840 * 114.90306 * 3 2 1 30 29 H 1.08997 * 109.47576 * 234.90409 * 3 2 1 31 30 H 1.08997 * 109.46814 * 299.99347 * 4 3 2 32 31 H 1.08997 * 109.47454 * 59.99359 * 4 3 2 33 32 H 1.08999 * 109.46822 * 215.30131 * 10 9 2 34 33 H 1.09004 * 109.47149 * 335.30474 * 10 9 2 35 34 H 1.08007 * 119.99828 * 359.97438 * 12 11 10 36 35 H 1.07996 * 119.99304 * 180.02562 * 20 13 12 37 36 H 1.08006 * 119.99939 * 179.97438 * 21 20 13 38 37 H 1.08006 * 120.00304 * 179.97438 * 22 21 20 39 38 H 1.08999 * 109.47060 * 210.00103 * 23 9 2 40 39 H 1.08994 * 109.47549 * 330.00485 * 23 9 2 41 40 H 1.09000 * 110.09160 * 181.59316 * 24 23 9 42 41 H 1.08995 * 110.72399 * 81.73905 * 26 25 24 43 42 H 1.08998 * 110.73144 * 205.03504 * 26 25 24 44 43 H 1.09003 * 110.31960 * 140.69193 * 27 26 25 45 44 H 1.08997 * 110.32361 * 262.89675 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 6 1.9663 1.3050 0.0000 4 6 0.9770 2.4652 -0.1280 5 14 1.9085 4.0786 -0.1272 6 1 0.9484 5.2046 -0.2521 7 1 2.6662 4.2121 1.1429 8 1 2.8534 4.1052 -1.2724 9 7 1.8867 -1.1672 0.0054 10 6 3.3469 -1.1694 0.1233 11 6 3.7340 -1.3605 1.5672 12 6 4.0006 -0.2620 2.3624 13 6 4.3562 -0.4372 3.6869 14 9 5.0162 2.2811 5.6544 15 9 3.8202 0.3612 5.9103 16 9 5.5916 1.6417 3.5459 17 9 6.0139 0.2634 5.3084 18 9 3.3980 1.7393 4.1478 19 6 4.4443 -1.7111 4.2160 20 6 4.1774 -2.8099 3.4206 21 6 3.8180 -2.6345 2.0976 22 6 1.1589 -2.4337 -0.1064 23 6 1.0216 -2.8144 -1.5820 24 8 0.3655 -1.7537 -2.3094 25 6 0.7686 -1.9929 -3.6799 26 6 2.2257 -2.4828 -3.5301 27 8 2.3219 -2.9634 -2.1772 28 1 2.5227 1.4033 0.9321 29 1 2.6597 1.3243 -0.8408 30 1 0.4206 2.3670 -1.0601 31 1 0.2837 2.4459 0.7128 32 1 3.7584 -1.9831 -0.4739 33 1 3.7419 -0.2191 -0.2360 34 1 3.9319 0.7334 1.9489 35 1 4.7217 -1.8480 5.2507 36 1 4.2467 -3.8053 3.8339 37 1 3.6099 -3.4930 1.4761 38 1 1.7061 -3.2150 0.4209 39 1 0.1680 -2.3235 0.3340 40 1 0.4567 -3.7416 -1.6785 41 1 0.1473 -2.7637 -4.1357 42 1 0.7293 -1.0710 -4.2601 43 1 2.4277 -3.2903 -4.2339 44 1 2.9205 -1.6582 -3.6891 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18331556_18164856_13179792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 9 2021 04:38:34 Heat of formation + Delta-G solvation = 286.507297 kcal Electronic energy + Delta-G solvation = -36754.854966 eV Core-core repulsion = 31036.393277 eV Total energy + Delta-G solvation = -5718.461689 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 373.127 amu Computer time = 17.92 seconds Orbital eigenvalues (eV) -44.38100 -44.23693 -44.18869 -44.09365 -43.53072 -41.82472 -41.04630 -40.32020 -36.96121 -35.84743 -34.13036 -33.25175 -32.40460 -31.48746 -29.00717 -27.48409 -25.34447 -23.97639 -23.96295 -22.98479 -22.92229 -20.08114 -18.58635 -18.32488 -18.17331 -17.65320 -17.23410 -16.94805 -16.69236 -16.53937 -16.05282 -15.72639 -15.52393 -15.33139 -15.23478 -15.08469 -14.97846 -14.79345 -14.68244 -14.55240 -14.31422 -14.18031 -14.15715 -14.06508 -14.03694 -13.90036 -13.82581 -13.61648 -13.61378 -13.56100 -13.38016 -13.36805 -13.29041 -12.83748 -12.65502 -12.44973 -12.38760 -12.28722 -12.06603 -11.93151 -11.74683 -11.57965 -11.40707 -11.17585 -10.94344 -10.77314 -10.73380 -10.55931 -9.74119 -5.25731 -4.80053 -3.07032 -0.68698 -0.50853 1.38433 1.50220 1.55112 1.64525 1.75347 2.00488 2.23963 2.61215 2.69475 2.92526 3.05280 3.40045 3.44833 3.62757 3.66786 3.73826 3.83422 3.93166 3.95821 4.04688 4.08590 4.17734 4.24733 4.31562 4.40118 4.45627 4.53955 4.59707 4.67047 4.72403 4.76455 4.80181 4.87550 4.89929 4.91966 5.06493 5.13706 5.29744 5.50860 6.01205 6.29023 7.20750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C 0.520 3.480 3 C -0.145 4.145 4 C -0.326 4.326 5 Si 0.987 3.013 6 H -0.281 1.281 7 H -0.287 1.287 8 H -0.251 1.251 9 N -0.600 5.600 10 C 0.143 3.857 11 C -0.045 4.045 12 C -0.119 4.119 13 C 0.319 3.681 14 F -0.220 7.220 15 F -0.162 7.162 16 F -0.161 7.161 17 F -0.156 7.156 18 F -0.167 7.167 19 C -0.115 4.115 20 C -0.030 4.030 21 C -0.066 4.066 22 C 0.112 3.888 23 C 0.207 3.793 24 O -0.389 6.389 25 C 0.006 3.994 26 C 0.025 3.975 27 O -0.384 6.384 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.115 0.885 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.224 0.776 37 H 0.212 0.788 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 -15.428 -10.672 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.434 6.434 2 C 0.310 3.690 3 C -0.184 4.184 4 C -0.419 4.419 5 Si 0.816 3.184 6 H -0.206 1.206 7 H -0.212 1.212 8 H -0.175 1.175 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.046 4.046 12 C -0.137 4.137 13 C 0.315 3.685 14 F -0.220 7.220 15 F -0.161 7.161 16 F -0.159 7.159 17 F -0.155 7.155 18 F -0.165 7.165 19 C -0.132 4.132 20 C -0.047 4.047 21 C -0.084 4.084 22 C -0.011 4.011 23 C 0.111 3.889 24 O -0.310 6.310 25 C -0.071 4.071 26 C -0.051 4.051 27 O -0.305 6.305 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.166 0.834 33 H 0.133 0.867 34 H 0.188 0.812 35 H 0.197 0.803 36 H 0.241 0.759 37 H 0.229 0.771 38 H 0.158 0.842 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.630 -14.553 -10.543 18.045 hybrid contribution -0.244 1.511 1.023 1.841 sum 1.386 -13.042 -9.520 16.207 Atomic orbital electron populations 1.90718 1.15834 1.87522 1.49361 1.20940 0.87699 0.86017 0.74364 1.21685 0.99638 0.91396 1.05684 1.24910 1.04195 1.06200 1.06624 0.84756 0.78229 0.76129 0.79291 1.20617 1.21248 1.17461 1.47775 1.06905 1.05599 1.72959 1.21010 0.79516 1.08713 0.88632 1.20809 0.98155 0.89156 0.96514 1.21961 1.00240 1.03967 0.87494 1.27868 1.09699 0.54746 0.76202 2.00000 1.97429 1.69783 1.54809 1.99919 1.98816 1.53709 1.63615 1.99919 1.99320 1.86441 1.30251 1.99919 1.87964 1.51179 1.76452 1.99920 1.82609 1.85300 1.48693 1.22325 1.00742 0.84191 1.05955 1.22133 0.94379 0.96393 0.91805 1.22347 0.92343 0.97929 0.95744 1.21930 0.99730 0.86506 0.92886 1.25026 0.80708 0.90482 0.92705 1.89628 1.70948 1.51311 1.19065 1.24403 0.94909 1.03365 0.84395 1.24014 0.96581 1.00696 0.83799 1.88783 1.30992 1.84840 1.25875 0.88453 0.85419 0.89050 0.90295 0.83353 0.86713 0.81210 0.80328 0.75917 0.77086 0.84199 0.89425 0.89012 0.90249 0.87413 0.88493 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 347. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.98 15.11 -2.41 -0.04 -5.02 16 2 C 0.52 -0.42 7.03 87.66 0.62 0.20 16 3 C -0.14 0.59 3.55 29.85 0.11 0.69 16 4 C -0.33 -0.06 3.75 71.98 0.27 0.22 16 5 Si 0.99 1.64 29.30 68.60 2.01 3.65 16 6 H -0.28 -1.62 7.11 99.48 0.71 -0.91 16 7 H -0.29 -1.92 7.11 99.48 0.71 -1.22 16 8 H -0.25 -0.08 7.11 99.48 0.71 0.63 16 9 N -0.60 5.39 2.32 -826.15 -1.92 3.47 16 10 C 0.14 -2.32 5.30 85.63 0.45 -1.86 16 11 C -0.04 0.70 5.46 -19.87 -0.11 0.59 16 12 C -0.12 0.87 8.00 22.27 0.18 1.05 16 13 C 0.32 -0.42 4.82 22.27 0.11 -0.32 16 14 F -0.22 -6.00 16.66 44.97 0.75 -5.26 16 15 F -0.16 -2.63 15.31 44.97 0.69 -1.94 16 16 F -0.16 -2.52 15.31 44.97 0.69 -1.83 16 17 F -0.16 -2.39 15.31 44.97 0.69 -1.70 16 18 F -0.17 -2.85 15.31 44.97 0.69 -2.16 16 19 C -0.11 1.12 8.62 22.27 0.19 1.32 16 20 C -0.03 0.62 10.05 22.27 0.22 0.84 16 21 C -0.07 1.44 9.30 22.27 0.21 1.65 16 22 C 0.11 -1.15 5.72 86.38 0.49 -0.65 16 23 C 0.21 -1.58 4.24 71.98 0.31 -1.28 16 24 O -0.39 0.24 10.34 -124.21 -1.28 -1.05 16 25 C 0.01 -0.04 7.81 72.47 0.57 0.53 16 26 C 0.03 -0.27 8.08 72.47 0.59 0.32 16 27 O -0.38 3.77 9.87 -125.98 -1.24 2.53 16 28 H 0.10 -0.57 5.77 -2.39 -0.01 -0.58 16 29 H 0.13 -1.33 7.19 -2.39 -0.02 -1.35 16 30 H 0.09 0.04 7.96 -2.39 -0.02 0.02 16 31 H 0.08 0.25 7.86 -2.39 -0.02 0.23 16 32 H 0.15 -3.05 6.98 -2.39 -0.02 -3.07 16 33 H 0.11 -2.02 6.05 -2.39 -0.01 -2.03 16 34 H 0.17 -1.03 5.53 -2.91 -0.02 -1.05 16 35 H 0.18 -1.64 7.40 -2.91 -0.02 -1.66 16 36 H 0.22 -6.34 8.06 -2.91 -0.02 -6.36 16 37 H 0.21 -6.28 7.41 -2.91 -0.02 -6.31 16 38 H 0.14 -2.73 6.96 -2.39 -0.02 -2.75 16 39 H 0.09 -0.42 7.36 -2.39 -0.02 -0.44 16 40 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.11 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 44 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 Total: 0.00 -44.74 383.13 7.03 -37.71 By element: Atomic # 1 Polarization: -33.50 SS G_CDS: 1.81 Total: -31.70 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.20 Total: 3.29 kcal Atomic # 7 Polarization: 5.39 SS G_CDS: -1.92 Total: 3.47 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -2.56 Total: -3.54 kcal Atomic # 9 Polarization: -16.39 SS G_CDS: 3.50 Total: -12.88 kcal Atomic # 14 Polarization: 1.64 SS G_CDS: 2.01 Total: 3.65 kcal Total: -44.74 7.03 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18331556_18164856_13179792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 324.215 kcal (2) G-P(sol) polarization free energy of solvation -44.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 279.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 286.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.92 seconds