Wall clock time and date at job start Fri Apr 9 2021 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 O 1.42911 * 109.46796 * 65.00015 * 4 3 2 6 6 C 1.52998 * 109.47005 * 184.99653 * 4 3 2 7 7 N 1.46510 * 109.46871 * 180.02562 * 6 4 3 8 8 C 1.46495 * 119.99707 * 90.00187 * 7 6 4 9 9 C 1.50704 * 109.46949 * 90.00045 * 8 7 6 10 10 C 1.38205 * 119.99921 * 270.26965 * 9 8 7 11 11 C 1.38261 * 119.99996 * 179.97438 * 10 9 8 12 12 C 1.38217 * 119.99499 * 359.97438 * 11 10 9 13 13 C 1.38252 * 120.00295 * 359.97438 * 12 11 10 14 Xx 1.81003 * 119.99688 * 179.97438 * 13 12 11 15 14 F 9.67686 * 172.50113 * 172.31270 * 4 2 1 16 15 F 1.60992 * 90.00266 * 314.99753 * 14 13 12 17 16 F 1.61006 * 89.99824 * 135.00117 * 14 13 12 18 17 F 1.60994 * 90.00197 * 44.99923 * 14 13 12 19 18 F 1.61002 * 90.00029 * 224.99910 * 14 13 12 20 19 C 1.38213 * 120.00021 * 359.81094 * 13 12 11 21 20 C 1.34779 * 119.99757 * 270.00566 * 7 6 4 22 21 O 1.21280 * 119.99788 * 180.02562 * 21 7 6 23 22 C 1.50698 * 119.99915 * 359.97438 * 21 7 6 24 23 C 1.53006 * 109.46986 * 180.02562 * 23 21 7 25 24 Si 1.86298 * 109.47332 * 179.97438 * 24 23 21 26 25 H 1.48500 * 109.46819 * 60.00272 * 25 24 23 27 26 H 1.48508 * 109.46892 * 180.02562 * 25 24 23 28 27 H 1.48493 * 109.47381 * 300.00347 * 25 24 23 29 28 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 30 29 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 30 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 32 31 H 1.08997 * 109.47298 * 305.00526 * 4 3 2 33 32 H 0.96702 * 113.99715 * 59.99871 * 5 4 3 34 33 H 1.08988 * 109.47411 * 300.00122 * 6 4 3 35 34 H 1.09003 * 109.46952 * 60.01021 * 6 4 3 36 35 H 1.09000 * 109.46545 * 209.99882 * 8 7 6 37 36 H 1.08999 * 109.47278 * 330.00138 * 8 7 6 38 37 H 1.07999 * 120.00205 * 359.97438 * 10 9 8 39 38 H 1.07991 * 120.00374 * 179.97438 * 11 10 9 40 39 H 1.08006 * 119.99128 * 179.97438 * 12 11 10 41 40 H 1.08001 * 119.99502 * 180.02562 * 20 13 12 42 41 H 1.08999 * 109.47515 * 300.00294 * 23 21 7 43 42 H 1.09000 * 109.47319 * 60.00667 * 23 21 7 44 43 H 1.08999 * 109.47064 * 300.00362 * 24 23 21 45 44 H 1.09002 * 109.47026 * 59.99662 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 8 2.7768 2.2777 -0.7992 6 6 4.6804 0.8391 -1.1834 7 7 5.1684 1.7324 -2.2372 8 6 5.5161 3.1194 -1.9186 9 6 6.9700 3.1960 -1.5295 10 6 7.3409 3.0371 -0.2077 11 6 8.6748 3.1069 0.1492 12 6 9.6374 3.3351 -0.8161 13 6 9.2664 3.4930 -2.1385 14 9 11.6478 4.0597 -4.5283 15 9 11.2342 4.8731 -2.4412 16 9 9.8197 2.7119 -4.3639 17 9 11.4406 2.6292 -2.7669 18 9 9.6133 4.9559 -4.0380 19 6 7.9334 3.4188 -2.4959 20 6 5.2972 1.2781 -3.4995 21 8 5.7016 2.0175 -4.3717 22 6 4.9399 -0.1488 -3.8270 23 6 5.1763 -0.4047 -5.3168 24 14 4.7354 -2.1689 -5.7215 25 1 3.3058 -2.4083 -5.3990 26 1 4.9655 -2.4174 -7.1675 27 1 5.5840 -3.0875 -4.9208 28 1 -1.0502 -0.0001 0.0004 29 1 3.0092 0.3479 0.9672 30 1 3.0098 -1.0104 -0.1831 31 1 2.7210 0.6389 -2.0562 32 1 3.1289 2.6068 0.0391 33 1 5.1148 1.1333 -0.2282 34 1 4.9692 -0.1865 -1.4136 35 1 5.3400 3.7477 -2.7917 36 1 4.8994 3.4675 -1.0900 37 1 6.5888 2.8584 0.5465 38 1 8.9647 2.9832 1.1821 39 1 10.6794 3.3901 -0.5372 40 1 7.6437 3.5418 -3.5291 41 1 5.5628 -0.8233 -3.2395 42 1 3.8906 -0.3242 -3.5899 43 1 4.5538 0.2698 -5.9046 44 1 6.2258 -0.2294 -5.5535 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18168888_18164856_13179792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 9 2021 03:54:30 Heat of formation + Delta-G solvation = 363.807229 kcal Electronic energy + Delta-G solvation = -34806.540400 eV Core-core repulsion = 29281.886739 eV Total energy + Delta-G solvation = -5524.653661 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 369.128 amu Computer time = 40.22 seconds Orbital eigenvalues (eV) -44.40948 -44.26948 -44.21656 -44.12620 -43.55288 -41.67443 -40.56509 -38.89261 -36.38791 -34.56914 -34.20012 -32.98271 -32.38713 -31.25801 -28.34443 -27.25151 -24.78235 -23.95385 -22.99486 -22.59817 -20.31512 -19.07090 -18.36322 -18.14310 -17.41670 -17.24234 -16.96348 -16.59837 -16.32951 -15.94816 -15.64285 -15.45253 -15.26830 -15.25322 -15.04183 -14.95761 -14.83485 -14.76488 -14.34770 -14.28359 -14.19797 -14.16789 -14.04074 -14.03337 -13.92326 -13.75519 -13.64887 -13.59008 -13.41124 -13.29507 -13.12629 -12.83371 -12.61554 -12.36956 -12.31651 -12.11619 -12.02102 -11.96391 -11.68430 -11.64045 -11.52569 -11.42902 -10.97489 -10.95564 -10.84039 -10.73130 -10.46495 -9.65795 -5.28651 -4.83160 -3.03176 -0.66503 -0.47690 1.44792 1.59372 1.60329 1.65073 1.75521 1.98475 2.02505 2.08003 2.31242 2.70820 2.99555 3.38137 3.51034 3.51947 3.66614 3.69202 3.73181 3.91673 4.02092 4.08393 4.14701 4.21106 4.28590 4.33868 4.43187 4.54469 4.62470 4.66048 4.77207 4.78113 4.88067 4.94666 4.96151 4.98246 5.16233 5.19891 5.28292 5.35053 5.53105 6.28685 6.82765 7.06294 7.17704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.197 4.197 3 C -0.042 4.042 4 C 0.097 3.903 5 O -0.572 6.572 6 C 0.067 3.933 7 N -0.599 5.599 8 C 0.155 3.845 9 C -0.046 4.046 10 C -0.058 4.058 11 C -0.030 4.030 12 C -0.115 4.115 13 C 0.315 3.685 14 F -0.223 7.223 15 F -0.157 7.157 16 F -0.162 7.162 17 F -0.159 7.159 18 F -0.170 7.170 19 C -0.114 4.114 20 C 0.507 3.493 21 O -0.578 6.578 22 C -0.138 4.138 23 C -0.341 4.341 24 Si 1.008 2.992 25 H -0.262 1.262 26 H -0.296 1.296 27 H -0.260 1.260 28 H 0.222 0.778 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.391 0.609 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.229 0.771 38 H 0.231 0.769 39 H 0.180 0.820 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -6.189 18.799 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.197 4.197 3 C -0.079 4.079 4 C 0.037 3.963 5 O -0.381 6.381 6 C -0.055 4.055 7 N -0.330 5.330 8 C 0.032 3.968 9 C -0.047 4.047 10 C -0.075 4.075 11 C -0.047 4.047 12 C -0.133 4.133 13 C 0.311 3.689 14 F -0.223 7.223 15 F -0.156 7.156 16 F -0.161 7.161 17 F -0.158 7.158 18 F -0.168 7.168 19 C -0.132 4.132 20 C 0.297 3.703 21 O -0.457 6.457 22 C -0.177 4.177 23 C -0.433 4.433 24 Si 0.836 3.164 25 H -0.187 1.187 26 H -0.223 1.223 27 H -0.183 1.183 28 H 0.238 0.762 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.241 0.759 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.175 0.825 37 H 0.246 0.754 38 H 0.247 0.753 39 H 0.197 0.803 40 H 0.165 0.835 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.474 -6.741 17.597 21.559 hybrid contribution 1.376 1.007 -1.778 2.464 sum -9.098 -5.734 15.819 19.128 Atomic orbital electron populations 1.25589 0.97355 1.01640 1.01160 1.23690 0.95780 0.99927 1.00323 1.19654 0.83416 1.03135 1.01711 1.22336 0.93996 0.82192 0.97770 1.86722 1.77688 1.28393 1.45254 1.22834 0.93116 0.96569 0.92948 1.47927 1.64653 1.11925 1.08468 1.20636 0.87595 0.83812 1.04743 1.20858 0.94209 0.98561 0.91113 1.22426 0.98201 0.91852 0.94985 1.22244 0.89001 0.94578 0.98861 1.22390 1.06484 1.00196 0.84208 1.27963 0.64873 1.11558 0.64555 2.00000 1.54353 1.99974 1.67958 1.99918 1.77815 1.96857 1.41028 1.99924 1.43916 1.94784 1.77457 1.99918 1.73306 1.91990 1.50566 1.99922 1.38752 1.94998 1.83156 1.21911 0.85909 1.00850 1.04578 1.21397 0.76130 0.90829 0.81970 1.90744 1.47210 1.59601 1.48161 1.21651 1.05774 0.92879 0.97382 1.25079 1.06051 1.13355 0.98789 0.84455 0.79412 0.74280 0.78230 1.18654 1.22262 1.18350 0.76151 0.85851 0.86220 0.90124 0.75882 0.84235 0.86339 0.90888 0.82542 0.75440 0.75273 0.80273 0.83505 0.85224 0.86220 0.90522 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 646. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 0.65 19.25 74.32 1.43 2.08 16 2 C -0.20 1.14 13.10 31.13 0.41 1.55 16 3 C -0.04 0.73 5.39 28.79 0.16 0.88 16 4 C 0.10 -1.64 3.21 30.59 0.10 -1.54 16 5 O -0.57 7.91 11.80 -148.98 -1.76 6.15 16 6 C 0.07 -1.49 4.91 86.38 0.42 -1.07 16 7 N -0.60 7.79 2.38 -826.15 -1.96 5.82 16 8 C 0.15 -2.14 5.27 85.64 0.45 -1.69 16 9 C -0.05 0.63 5.46 -19.87 -0.11 0.52 16 10 C -0.06 1.39 9.70 22.27 0.22 1.60 16 11 C -0.03 0.66 10.05 22.27 0.22 0.89 16 12 C -0.12 1.06 8.62 22.27 0.19 1.25 16 13 C 0.31 0.59 4.82 22.27 0.11 0.69 16 14 F -0.22 -6.77 16.67 44.97 0.75 -6.02 16 15 F -0.16 -2.83 15.31 44.97 0.69 -2.14 16 16 F -0.16 -3.59 15.30 44.97 0.69 -2.90 16 17 F -0.16 -2.84 15.32 44.97 0.69 -2.15 16 18 F -0.17 -3.70 15.32 44.97 0.69 -3.01 16 19 C -0.11 0.19 8.28 22.27 0.18 0.37 16 20 C 0.51 -1.73 7.67 87.66 0.67 -1.06 16 21 O -0.58 -4.61 15.10 -3.03 -0.05 -4.66 16 22 C -0.14 1.14 3.62 29.85 0.11 1.25 16 23 C -0.34 0.69 3.74 71.98 0.27 0.96 16 24 Si 1.01 -2.73 29.30 68.60 2.01 -0.72 16 25 H -0.26 0.65 7.11 99.48 0.71 1.36 16 26 H -0.30 -1.07 7.11 99.48 0.71 -0.36 16 27 H -0.26 0.74 7.11 99.48 0.71 1.45 16 28 H 0.22 -1.38 7.80 -4.41 -0.03 -1.42 16 29 H 0.12 -2.83 8.14 -2.39 -0.02 -2.85 16 30 H 0.12 -2.48 8.14 -2.39 -0.02 -2.50 16 31 H 0.08 -0.92 7.22 -2.39 -0.02 -0.94 16 32 H 0.39 -9.28 8.79 -74.06 -0.65 -9.93 16 33 H 0.14 -4.42 8.06 -2.39 -0.02 -4.44 16 34 H 0.12 -2.97 6.44 -2.39 -0.02 -2.98 16 35 H 0.07 -0.41 7.37 -2.39 -0.02 -0.42 16 36 H 0.16 -3.57 6.82 -2.39 -0.02 -3.59 16 37 H 0.23 -8.19 8.05 -2.91 -0.02 -8.22 16 38 H 0.23 -7.14 8.06 -2.92 -0.02 -7.16 16 39 H 0.18 -1.58 7.40 -2.91 -0.02 -1.60 16 40 H 0.15 0.96 6.93 -2.91 -0.02 0.94 16 41 H 0.13 -1.92 7.22 -2.39 -0.02 -1.94 16 42 H 0.12 -1.54 7.01 -2.39 -0.02 -1.56 16 43 H 0.08 0.06 7.92 -2.39 -0.02 0.05 16 44 H 0.07 0.11 7.92 -2.39 -0.02 0.10 16 Total: 0.00 -56.68 400.20 7.73 -48.95 By element: Atomic # 1 Polarization: -47.17 SS G_CDS: 1.15 Total: -46.02 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.83 Total: 6.69 kcal Atomic # 7 Polarization: 7.79 SS G_CDS: -1.96 Total: 5.82 kcal Atomic # 8 Polarization: 3.30 SS G_CDS: -1.80 Total: 1.50 kcal Atomic # 9 Polarization: -19.73 SS G_CDS: 3.50 Total: -16.22 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.01 Total: -0.72 kcal Total: -56.68 7.73 -48.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18168888_18164856_13179792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 412.761 kcal (2) G-P(sol) polarization free energy of solvation -56.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 356.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 363.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 40.23 seconds