Wall clock time and date at job start Fri Apr 9 2021 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38222 * 119.97271 * 2 1 4 4 C 1.38216 * 120.02190 * 180.28093 * 3 2 1 5 5 C 1.38436 * 119.97528 * 359.44485 * 4 3 2 6 6 F 1.35109 * 120.02395 * 180.30093 * 5 4 3 7 7 C 1.38477 * 119.94857 * 0.27438 * 5 4 3 8 8 C 1.50698 * 120.01248 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.47360 * 281.93972 * 8 7 5 10 10 C 1.34778 * 119.99972 * 268.02170 * 9 8 7 11 11 O 1.21287 * 119.99898 * 174.99108 * 10 9 8 12 12 C 1.50702 * 120.00008 * 354.99990 * 10 9 8 13 13 C 1.52994 * 109.47280 * 179.97438 * 12 10 9 14 14 Si 1.86295 * 109.47391 * 179.97438 * 13 12 10 15 15 H 1.48503 * 109.47175 * 59.99857 * 14 13 12 16 16 H 1.48497 * 109.47610 * 179.97438 * 14 13 12 17 17 H 1.48508 * 109.47062 * 300.00043 * 14 13 12 18 18 C 1.39919 * 120.00204 * 88.02250 * 9 8 7 19 19 C 1.38876 * 120.07087 * 248.41408 * 18 9 8 20 20 C 1.38111 * 119.92611 * 179.74728 * 19 18 9 21 21 C 1.38287 * 120.07542 * 0.52406 * 20 19 18 22 22 C 1.50699 * 119.93086 * 179.76801 * 21 20 19 23 23 C 1.52995 * 109.47036 * 269.97706 * 22 21 20 24 24 C 1.47202 * 109.46930 * 180.02562 * 23 22 21 25 25 N 9.79795 * 149.36463 * 173.09061 * 5 1 2 26 26 C 1.38284 * 120.13444 * 359.75199 * 21 20 19 27 27 C 1.38112 * 120.07388 * 359.97227 * 26 21 20 28 28 C 1.38170 * 119.97542 * 0.02562 * 7 5 4 29 29 H 1.09004 * 109.46968 * 270.27724 * 1 2 3 30 30 H 1.09003 * 109.47533 * 30.27672 * 1 2 3 31 31 H 1.08999 * 109.47491 * 150.27775 * 1 2 3 32 32 H 1.08001 * 119.98610 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.01426 * 179.71753 * 4 3 2 34 34 H 1.09000 * 109.47374 * 41.93874 * 8 7 5 35 35 H 1.09004 * 109.47513 * 161.93747 * 8 7 5 36 36 H 1.09004 * 109.46896 * 299.99638 * 12 10 9 37 37 H 1.09001 * 109.47681 * 59.99260 * 12 10 9 38 38 H 1.09004 * 109.47035 * 299.99766 * 13 12 10 39 39 H 1.09006 * 109.47482 * 59.99577 * 13 12 10 40 40 H 1.07994 * 120.03454 * 0.02562 * 19 18 9 41 41 H 1.08004 * 119.96523 * 180.27309 * 20 19 18 42 42 H 1.08998 * 109.47207 * 29.98515 * 22 21 20 43 43 H 1.09004 * 109.46473 * 149.97963 * 22 21 20 44 44 H 1.08998 * 109.47784 * 300.00456 * 23 22 21 45 45 H 1.09010 * 109.46864 * 60.00675 * 23 22 21 46 46 H 1.08001 * 119.96034 * 180.02562 * 26 21 20 47 47 H 1.07996 * 120.03291 * 180.02562 * 27 26 21 48 48 H 1.07999 * 119.98985 * 179.97438 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1974 0.0000 4 6 3.5797 1.1986 -0.0059 5 6 4.2724 0.0000 -0.0001 6 9 5.6235 0.0001 0.0003 7 6 3.5795 -1.1989 0.0057 8 6 4.3321 -2.5045 0.0126 9 7 4.8240 -2.7918 -1.3372 10 6 4.0782 -3.5293 -2.1835 11 8 4.4422 -3.6912 -3.3290 12 6 2.7918 -4.1528 -1.7064 13 6 2.1452 -4.9302 -2.8545 14 14 0.5554 -5.7015 -2.2646 15 1 -0.3711 -4.6359 -1.8049 16 1 -0.0725 -6.4556 -3.3792 17 1 0.8421 -6.6275 -1.1395 18 6 6.0681 -2.3004 -1.7478 19 6 6.1395 -1.3158 -2.7246 20 6 7.3689 -0.8293 -3.1239 21 6 8.5284 -1.3291 -2.5600 22 6 9.8683 -0.7996 -3.0018 23 6 10.3841 -1.6334 -4.1763 24 6 11.6932 -1.1165 -4.6075 25 7 12.7028 4.9565 -0.6010 26 6 8.4609 -2.3136 -1.5912 27 6 7.2344 -2.8003 -1.1834 28 6 2.1978 -1.1977 0.0053 29 1 -0.3633 0.0050 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6569 2.1323 -0.0004 33 1 4.1191 2.1342 -0.0105 34 1 5.1757 -2.4341 0.6993 35 1 3.6671 -3.3057 0.3351 36 1 3.0018 -4.8320 -0.8801 37 1 2.1117 -3.3703 -1.3695 38 1 1.9352 -4.2506 -3.6805 39 1 2.8251 -5.7127 -3.1918 40 1 5.2346 -0.9279 -3.1682 41 1 7.4249 -0.0604 -3.8803 42 1 9.7637 0.2400 -3.3124 43 1 10.5746 -0.8621 -2.1739 44 1 10.4887 -2.6730 -3.8657 45 1 9.6777 -1.5709 -5.0042 46 1 9.3682 -2.7016 -1.1524 47 1 7.1824 -3.5689 -0.4265 48 1 1.6572 -2.1326 0.0095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18176134_16731010_13179792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 9 2021 03:17:58 Heat of formation + Delta-G solvation = 431.294864 kcal Electronic energy + Delta-G solvation = -30961.572665 eV Core-core repulsion = 26801.560827 eV Total energy + Delta-G solvation = -4160.011837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.161 amu Computer time = 48.27 seconds Orbital eigenvalues (eV) -49.89292 -41.87010 -40.22505 -39.88968 -37.24573 -35.09175 -33.66895 -33.36550 -32.60605 -32.10979 -30.18348 -28.70511 -27.82564 -27.23765 -26.31213 -24.43493 -23.97663 -23.51664 -22.15384 -22.01729 -20.33494 -18.71649 -18.61423 -18.19023 -18.00645 -17.46349 -17.33504 -16.54999 -16.37784 -16.30092 -16.06283 -15.69978 -15.44510 -15.14850 -14.93761 -14.77311 -14.62596 -14.60831 -14.49008 -14.43349 -14.36092 -14.28226 -14.02695 -13.55243 -13.27074 -12.96160 -12.81255 -12.66993 -12.64024 -12.48136 -12.41108 -12.38032 -12.10017 -11.96836 -11.91248 -11.61825 -11.54948 -10.92294 -10.42166 -10.07507 -10.07030 -9.55103 -9.39257 -8.73150 -5.68696 -5.12041 -5.11051 0.02254 0.16065 0.19486 0.26789 1.43219 1.46106 1.63468 1.69084 1.82810 1.92430 2.16069 2.53592 2.64100 3.29157 3.50995 3.62201 3.64312 3.71977 3.83257 3.85861 3.90342 3.95766 4.04945 4.14334 4.18341 4.24156 4.26940 4.30201 4.40248 4.46995 4.51770 4.54894 4.58511 4.66141 4.76856 4.85936 4.87465 4.88945 4.92516 4.98266 5.09768 5.12119 5.17244 5.21374 5.23471 5.28779 5.30820 5.34754 5.46140 5.53209 5.62634 5.89841 5.93571 6.16893 6.54690 7.03747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.162 4.162 5 C 0.084 3.916 6 F -0.148 7.148 7 C -0.150 4.150 8 C 0.144 3.856 9 N -0.565 5.565 10 C 0.510 3.490 11 O -0.573 6.573 12 C -0.131 4.131 13 C -0.349 4.349 14 Si 1.018 2.982 15 H -0.250 1.250 16 H -0.289 1.289 17 H -0.260 1.260 18 C 0.129 3.871 19 C -0.097 4.097 20 C -0.129 4.129 21 C -0.084 4.084 22 C -0.072 4.072 23 C -0.117 4.117 24 C -0.847 4.847 25 N 1.000 4.000 26 C -0.125 4.125 27 C -0.111 4.111 28 C -0.084 4.084 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.009 0.991 45 H 0.011 0.989 46 H 0.127 0.873 47 H 0.148 0.852 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 29.934 24.553 38.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.180 4.180 5 C 0.064 3.936 6 F -0.127 7.127 7 C -0.152 4.152 8 C 0.024 3.976 9 N -0.294 5.294 10 C 0.301 3.699 11 O -0.451 6.451 12 C -0.170 4.170 13 C -0.440 4.440 14 Si 0.844 3.156 15 H -0.173 1.173 16 H -0.215 1.215 17 H -0.183 1.183 18 C 0.038 3.962 19 C -0.117 4.117 20 C -0.148 4.148 21 C -0.084 4.084 22 C -0.110 4.110 23 C -0.153 4.153 24 C -0.847 4.847 25 N 1.000 4.000 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.102 4.102 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.144 0.856 47 H 0.166 0.834 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.428 29.411 24.281 38.142 hybrid contribution 0.152 -0.060 -0.488 0.515 sum 0.580 29.351 23.793 37.788 Atomic orbital electron populations 1.20873 0.88793 1.03985 1.03587 1.20318 0.97890 0.92664 0.99034 1.21255 0.92581 0.99428 0.97567 1.21344 0.95815 0.96999 1.03866 1.17939 0.76732 0.95290 1.03605 1.91513 1.29811 1.97455 1.93885 1.20330 0.95311 0.94127 1.05476 1.20839 0.99983 0.94944 0.81830 1.45701 1.16340 1.51708 1.15622 1.21851 0.86334 0.77086 0.84585 1.90743 1.72705 1.61192 1.20447 1.21742 0.92313 1.01907 1.01028 1.25277 1.11697 1.05212 1.01782 0.84336 0.74127 0.78708 0.78474 1.17310 1.21504 1.18343 1.17427 0.85595 0.95501 0.97664 1.21030 0.96863 0.96208 0.97607 1.20901 0.91897 1.01479 1.00486 1.20491 0.95676 0.96908 0.95322 1.21249 0.91057 0.99556 0.99121 1.21327 1.02956 0.95861 0.95115 1.83456 0.84040 1.13956 1.03225 1.99996 0.63818 0.57864 0.78323 1.21003 0.98039 0.97351 0.98001 1.21290 0.90768 0.99651 1.01310 1.21230 0.91475 0.99772 0.97767 0.89698 0.90766 0.90387 0.83001 0.84041 0.88571 0.84267 0.84811 0.85847 0.90528 0.90604 0.87215 0.86692 0.92756 0.92535 0.97305 0.97151 0.85555 0.83432 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 873. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.80 10.01 71.24 0.71 1.51 16 2 C -0.10 0.25 5.88 -19.86 -0.12 0.13 16 3 C -0.09 0.14 9.70 22.26 0.22 0.35 16 4 C -0.16 -0.32 10.03 22.31 0.22 -0.09 16 5 C 0.08 0.48 7.25 22.37 0.16 0.64 16 6 F -0.15 -1.55 15.18 44.97 0.68 -0.86 16 7 C -0.15 -0.31 5.47 -19.82 -0.11 -0.42 16 8 C 0.14 0.17 5.06 85.63 0.43 0.60 16 9 N -0.56 -5.68 2.50 -635.29 -1.59 -7.27 16 10 C 0.51 6.15 7.56 87.66 0.66 6.81 16 11 O -0.57 -13.50 15.59 -3.05 -0.05 -13.54 16 12 C -0.13 -0.10 3.50 29.85 0.10 0.01 16 13 C -0.35 -1.13 3.74 71.98 0.27 -0.86 16 14 Si 1.02 -0.74 29.30 68.60 2.01 1.27 16 15 H -0.25 0.60 7.11 99.48 0.71 1.30 16 16 H -0.29 -1.28 7.11 99.48 0.71 -0.58 16 17 H -0.26 0.18 7.11 99.48 0.71 0.88 16 18 C 0.13 2.22 3.68 38.15 0.14 2.36 16 19 C -0.10 -2.07 9.02 22.39 0.20 -1.87 16 20 C -0.13 -3.16 9.69 22.25 0.22 -2.95 16 21 C -0.08 -2.24 5.14 -19.84 -0.10 -2.35 16 22 C -0.07 -2.40 5.30 29.85 0.16 -2.25 16 23 C -0.12 -5.60 5.68 28.79 0.16 -5.43 16 24 C -0.85 -47.98 25.23 70.18 1.77 -46.21 16 25 N 1.00 -61.87 30.19 37.02 1.12 -60.76 16 26 C -0.13 -2.75 9.69 22.25 0.22 -2.53 16 27 C -0.11 -1.88 9.72 22.39 0.22 -1.66 16 28 C -0.08 0.20 8.66 22.26 0.19 0.40 16 29 H 0.08 -0.72 8.14 -2.38 -0.02 -0.74 16 30 H 0.07 -0.55 8.09 -2.39 -0.02 -0.56 16 31 H 0.08 -0.62 8.08 -2.39 -0.02 -0.64 16 32 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 33 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.10 0.11 7.76 -2.39 -0.02 0.09 16 35 H 0.14 -1.00 6.22 -2.38 -0.01 -1.02 16 36 H 0.13 -0.82 7.41 -2.38 -0.02 -0.83 16 37 H 0.12 -0.64 5.56 -2.39 -0.01 -0.65 16 38 H 0.08 0.45 7.92 -2.38 -0.02 0.44 16 39 H 0.08 0.49 7.92 -2.38 -0.02 0.47 16 40 H 0.11 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 43 H 0.06 1.73 8.08 -2.38 -0.02 1.71 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 47 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 48 H 0.16 -1.42 6.52 -2.91 -0.02 -1.44 16 Total: 0.00 -135.76 428.50 9.63 -126.13 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.72 Total: 8.85 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 5.73 Total: -53.81 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.47 Total: -68.03 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.05 Total: -13.54 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.68 Total: -0.86 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.01 Total: 1.27 kcal Total: -135.76 9.63 -126.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18176134_16731010_13179792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 557.428 kcal (2) G-P(sol) polarization free energy of solvation -135.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 421.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -126.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 431.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 48.27 seconds