Wall clock time and date at job start Fri Apr 9 2021 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38218 * 120.11343 * 2 1 4 4 C 1.37980 * 119.77607 * 180.09733 * 3 2 1 5 5 C 1.38863 * 120.54089 * 0.03335 * 4 3 2 6 6 C 1.50632 * 117.75278 * 179.66944 * 5 4 3 7 7 C 1.52740 * 110.58971 * 162.56145 * 6 5 4 8 8 C 1.53324 * 108.37919 * 51.05889 * 7 6 5 9 9 C 1.52731 * 108.37884 * 290.07319 * 8 7 6 10 10 H 1.09002 * 109.25917 * 290.79648 * 9 8 7 11 11 N 1.46498 * 109.22373 * 171.34598 * 9 8 7 12 12 C 1.46496 * 120.00381 * 293.72669 * 11 9 8 13 13 C 1.50707 * 109.47272 * 96.30661 * 12 11 9 14 14 C 1.32817 * 124.72316 * 83.70939 * 13 12 11 15 15 C 1.44408 * 113.07373 * 179.97438 * 14 13 12 16 16 C 1.43194 * 123.45119 * 179.97438 * 15 14 13 17 17 N 9.45699 * 100.96085 * 196.20228 * 5 1 2 18 18 C 1.35947 * 113.09506 * 0.02562 * 15 14 13 19 19 S 1.70450 * 110.83175 * 359.74271 * 18 15 14 20 20 C 1.34777 * 120.00077 * 113.72635 * 11 9 8 21 21 O 1.21279 * 120.00539 * 184.94141 * 20 11 9 22 22 C 1.50698 * 119.99970 * 4.93667 * 20 11 9 23 23 C 1.53006 * 109.47332 * 184.89761 * 22 20 11 24 24 Si 1.86298 * 109.46909 * 180.02562 * 23 22 20 25 25 H 1.48501 * 109.47271 * 60.00290 * 24 23 22 26 26 H 1.48510 * 109.46862 * 180.02562 * 24 23 22 27 27 H 1.48500 * 109.47123 * 299.99659 * 24 23 22 28 28 C 1.37704 * 119.68480 * 359.77667 * 5 4 3 29 29 C 1.37974 * 120.11758 * 179.72642 * 2 1 3 30 30 H 1.09003 * 109.46878 * 90.00170 * 1 2 3 31 31 H 1.09000 * 109.46969 * 209.99952 * 1 2 3 32 32 H 1.09001 * 109.47203 * 330.00114 * 1 2 3 33 33 H 1.08007 * 120.11072 * 0.07170 * 3 2 1 34 34 H 1.08001 * 119.72710 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.26903 * 42.26441 * 6 5 4 36 36 H 1.09002 * 109.20982 * 282.81589 * 6 5 4 37 37 H 1.09002 * 109.68067 * 291.33678 * 7 6 5 38 38 H 1.09002 * 109.71616 * 170.79833 * 7 6 5 39 39 H 1.09004 * 109.67789 * 170.35552 * 8 7 6 40 40 H 1.08998 * 109.68506 * 49.80083 * 8 7 6 41 41 H 1.08996 * 109.47556 * 216.30867 * 12 11 9 42 42 H 1.09003 * 109.47241 * 336.30918 * 12 11 9 43 43 H 1.08001 * 123.46220 * 359.94570 * 14 13 12 44 44 H 1.08005 * 124.58360 * 180.02562 * 18 15 14 45 45 H 1.09003 * 109.47132 * 304.89395 * 22 20 11 46 46 H 1.09001 * 109.47141 * 64.89893 * 22 20 11 47 47 H 1.08994 * 109.47017 * 299.99880 * 23 22 20 48 48 H 1.09001 * 109.46900 * 59.99984 * 23 22 20 49 49 H 1.07998 * 119.72411 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.1956 0.0000 4 6 3.5803 1.1875 -0.0020 5 6 4.2788 -0.0126 -0.0048 6 6 5.7837 0.0518 -0.0146 7 6 6.3815 -1.2875 0.4120 8 6 5.7367 -2.3948 -0.4299 9 6 4.2794 -2.5421 0.0030 10 1 4.2436 -2.9623 1.0081 11 7 3.5901 -3.4445 -0.9226 12 6 3.3879 -3.0477 -2.3183 13 6 4.4822 -3.6358 -3.1714 14 6 4.4755 -4.8680 -3.6671 15 6 5.6508 -5.1694 -4.4502 16 6 5.8726 -6.4329 -5.0865 17 7 6.1061 8.8978 2.5838 18 6 6.5254 -4.1311 -4.5205 19 16 5.9397 -2.7853 -3.6538 20 6 3.1421 -4.6398 -0.4902 21 8 2.6520 -5.4238 -1.2751 22 6 3.2501 -5.0022 0.9685 23 6 2.7865 -6.4462 1.1711 24 14 2.9194 -6.8938 2.9746 25 1 2.0632 -5.9822 3.7753 26 1 2.4701 -8.2956 3.1711 27 1 4.3314 -6.7609 3.4149 28 6 3.5880 -1.2038 -0.0008 29 6 2.1993 -1.1935 0.0057 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6641 2.1331 0.0012 34 1 4.1213 2.1222 -0.0016 35 1 6.1150 0.8289 0.6741 36 1 6.1258 0.2938 -1.0209 37 1 6.1751 -1.4618 1.4680 38 1 7.4586 -1.2793 0.2449 39 1 6.2648 -3.3344 -0.2671 40 1 5.7809 -2.1264 -1.4854 41 1 2.4213 -3.4142 -2.6638 42 1 3.4126 -1.9606 -2.3942 43 1 3.6737 -5.5723 -3.5011 44 1 7.4624 -4.1541 -5.0572 45 1 4.2867 -4.9047 1.2913 46 1 2.6219 -4.3331 1.5566 47 1 1.7501 -6.5437 0.8483 48 1 3.4147 -7.1153 0.5830 49 1 1.6568 -2.1272 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_17776594_16731522_13179792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 9 2021 06:13:21 Heat of formation + Delta-G solvation = 451.733879 kcal Electronic energy + Delta-G solvation = -31108.562232 eV Core-core repulsion = 27224.279160 eV Total energy + Delta-G solvation = -3884.283072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 368.143 amu Computer time = 5.60 seconds Orbital eigenvalues (eV) -41.91083 -40.41528 -38.17842 -37.64400 -36.04897 -33.98845 -33.03052 -32.34909 -31.26430 -29.75467 -28.66373 -27.59603 -27.31969 -25.53892 -24.75040 -24.16698 -23.26205 -22.81504 -21.16216 -20.41354 -19.91430 -18.86713 -18.17804 -17.40652 -17.10815 -16.72194 -16.56889 -16.40439 -16.04618 -15.68884 -15.35421 -15.07790 -14.74280 -14.66967 -14.64315 -14.58141 -14.39107 -14.09332 -13.81871 -13.68654 -13.63497 -13.39360 -13.29589 -13.20771 -13.07754 -12.91873 -12.76559 -12.44245 -12.24681 -12.15017 -12.00314 -11.88212 -11.73824 -11.66143 -11.55328 -11.46967 -11.33616 -10.80962 -10.10076 -9.89771 -9.78321 -9.55442 -9.26625 -9.23151 -6.19523 -5.07648 -5.07600 0.34026 0.46533 0.48915 0.79159 1.18354 1.41153 1.55890 1.62230 1.65837 1.92852 2.00727 2.16315 2.42209 2.82108 3.47454 3.59390 3.70651 3.83817 3.86568 3.97902 4.02192 4.07833 4.08585 4.12557 4.15405 4.27292 4.32690 4.37564 4.42791 4.49773 4.52851 4.59604 4.68710 4.73086 4.80445 4.87376 4.88342 4.95112 4.97795 5.01705 5.11110 5.16158 5.22455 5.25515 5.29580 5.37140 5.39049 5.42334 5.47346 5.57663 5.73824 5.78468 6.07430 6.14538 6.16389 6.32169 7.11088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.114 4.114 4 C -0.115 4.115 5 C -0.075 4.075 6 C -0.077 4.077 7 C -0.108 4.108 8 C -0.151 4.151 9 C 0.177 3.823 10 H 0.125 0.875 11 N -0.596 5.596 12 C 0.210 3.790 13 C -0.166 4.166 14 C -0.141 4.141 15 C -0.181 4.181 16 C -0.331 4.331 17 N 1.000 4.000 18 C -0.602 4.602 19 S 0.090 5.910 20 C 0.500 3.500 21 O -0.576 6.576 22 C -0.129 4.129 23 C -0.354 4.354 24 Si 1.031 2.969 25 H -0.248 1.248 26 H -0.282 1.282 27 H -0.267 1.267 28 C -0.101 4.101 29 C -0.120 4.120 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.132 0.868 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 73.982 39.779 84.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.132 4.132 4 C -0.133 4.133 5 C -0.076 4.076 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.190 4.190 9 C 0.075 3.925 10 H 0.142 0.858 11 N -0.327 5.327 12 C 0.084 3.916 13 C -0.283 4.283 14 C -0.177 4.177 15 C -0.186 4.186 16 C -0.338 4.338 17 N 1.000 4.000 18 C -0.732 4.732 19 S 0.348 5.652 20 C 0.291 3.709 21 O -0.454 6.454 22 C -0.169 4.169 23 C -0.444 4.444 24 Si 0.855 3.145 25 H -0.171 1.171 26 H -0.207 1.207 27 H -0.191 1.191 28 C -0.102 4.102 29 C -0.138 4.138 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.129 0.871 46 H 0.150 0.850 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.697 74.855 40.505 85.128 hybrid contribution -0.330 -1.454 -1.607 2.192 sum 1.367 73.401 38.898 83.082 Atomic orbital electron populations 1.20803 0.90406 1.03442 1.02383 1.20076 0.96864 0.93262 1.00104 1.21283 0.94473 0.97797 0.99654 1.21400 0.94129 0.97779 0.99957 1.19827 0.96415 0.92173 0.99154 1.20536 0.89814 0.98323 1.02711 1.21501 1.00110 0.93155 0.99829 1.22295 0.94448 1.00133 1.02149 1.20261 0.90771 0.87656 0.93800 0.85791 1.48223 1.57620 1.17967 1.08934 1.19541 0.93299 0.98865 0.79863 1.24860 1.01512 0.97565 1.04332 1.20755 0.97246 0.97555 1.02163 1.21656 0.95630 1.00894 1.00379 1.81569 0.37892 0.96862 1.17435 2.00000 0.73343 0.63279 0.63378 1.22035 1.10253 1.02565 1.38377 1.80229 1.14371 1.16974 1.53586 1.21704 0.76512 0.80180 0.92531 1.90694 1.46480 1.49680 1.58576 1.21613 1.05532 0.98940 0.90778 1.25371 1.05156 0.97746 1.16115 0.84194 0.79635 0.78828 0.71821 1.17136 1.20709 1.19137 1.19669 0.93622 0.93847 1.03044 1.21026 0.93563 0.98057 1.01153 0.91660 0.92108 0.89546 0.83378 0.82671 0.87138 0.91219 0.89645 0.90652 0.93464 0.91419 0.90836 0.88050 0.87606 0.90185 0.87067 0.85040 0.89972 0.91827 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.01 10.02 71.24 0.71 0.73 16 2 C -0.10 -0.29 5.87 -19.93 -0.12 -0.41 16 3 C -0.11 0.27 9.71 22.20 0.22 0.49 16 4 C -0.11 0.38 9.61 22.36 0.21 0.60 16 5 C -0.08 -0.16 5.74 -19.86 -0.11 -0.27 16 6 C -0.08 0.05 5.67 29.74 0.17 0.22 16 7 C -0.11 -0.38 5.98 30.62 0.18 -0.19 16 8 C -0.15 -2.13 5.22 30.61 0.16 -1.97 16 9 C 0.18 2.00 2.40 44.14 0.11 2.11 16 10 H 0.12 0.72 5.76 -2.39 -0.01 0.71 16 11 N -0.60 -12.00 1.56 -806.95 -1.26 -13.26 16 12 C 0.21 5.53 4.82 85.64 0.41 5.95 16 13 C -0.17 -6.35 5.45 24.51 0.13 -6.22 16 14 C -0.14 -6.99 9.72 22.66 0.22 -6.77 16 15 C -0.18 -10.46 5.84 -21.00 -0.12 -10.58 16 16 C -0.33 -19.83 25.42 69.07 1.76 -18.08 16 17 N 1.00 -76.47 30.19 37.02 1.12 -75.35 16 18 C -0.60 -32.65 10.78 67.29 0.73 -31.92 16 19 S 0.09 3.42 20.21 -56.49 -1.14 2.28 16 20 C 0.50 11.45 7.60 87.66 0.67 12.12 16 21 O -0.58 -19.37 14.26 -3.03 -0.04 -19.41 16 22 C -0.13 -1.50 3.45 29.85 0.10 -1.40 16 23 C -0.35 -4.59 3.75 71.98 0.27 -4.32 16 24 Si 1.03 6.83 29.30 68.60 2.01 8.84 16 25 H -0.25 -1.03 7.11 99.48 0.71 -0.32 16 26 H -0.28 -2.88 7.11 99.48 0.71 -2.17 16 27 H -0.27 -1.99 7.11 99.48 0.71 -1.29 16 28 C -0.10 -0.73 4.36 -19.86 -0.09 -0.82 16 29 C -0.12 -0.88 8.39 22.36 0.19 -0.69 16 30 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.06 0.06 8.09 -2.39 -0.02 0.04 16 32 H 0.09 -0.42 8.09 -2.39 -0.02 -0.44 16 33 H 0.15 -1.30 8.06 -2.91 -0.02 -1.32 16 34 H 0.16 -1.77 8.05 -2.91 -0.02 -1.79 16 35 H 0.11 -0.94 8.13 -2.39 -0.02 -0.96 16 36 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.08 -0.05 8.10 -2.39 -0.02 -0.07 16 38 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 1.37 4.07 -8.16 -0.03 1.33 16 41 H 0.07 2.12 7.70 -2.39 -0.02 2.10 16 42 H 0.10 2.19 6.95 -2.39 -0.02 2.17 16 43 H 0.11 5.44 7.08 -2.91 -0.02 5.42 16 44 H 0.08 4.57 8.06 -2.91 -0.02 4.54 16 45 H 0.11 0.86 7.24 -2.39 -0.02 0.85 16 46 H 0.13 0.48 7.88 -2.39 -0.02 0.46 16 47 H 0.08 1.16 7.87 -2.39 -0.02 1.14 16 48 H 0.06 1.16 7.96 -2.39 -0.02 1.14 16 49 H 0.10 1.03 7.62 -2.91 -0.02 1.01 16 Total: 0.00 -152.68 425.92 8.17 -144.51 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.70 Total: 13.82 kcal Atomic # 6 Polarization: -67.22 SS G_CDS: 5.80 Total: -61.42 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -0.14 Total: -88.61 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.04 Total: -19.41 kcal Atomic # 14 Polarization: 6.83 SS G_CDS: 2.01 Total: 8.84 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.14 Total: 2.28 kcal Total: -152.68 8.17 -144.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_17776594_16731522_13179792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 596.244 kcal (2) G-P(sol) polarization free energy of solvation -152.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 443.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -144.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 451.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.60 seconds