Wall clock time and date at job start Fri Apr 9 2021 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38220 * 120.11333 * 2 1 4 4 C 1.37972 * 119.76832 * 180.12374 * 3 2 1 5 5 C 1.38867 * 120.54943 * 359.97438 * 4 3 2 6 6 C 1.50630 * 117.75647 * 179.78504 * 5 4 3 7 7 C 1.52737 * 110.58818 * 162.53101 * 6 5 4 8 8 C 1.53324 * 108.37879 * 51.06245 * 7 6 5 9 9 C 1.52737 * 108.37594 * 290.06447 * 8 7 6 10 10 N 1.46495 * 109.25564 * 171.36149 * 9 8 7 11 11 C 1.46498 * 119.99772 * 120.00113 * 10 9 8 12 12 C 1.50705 * 109.47435 * 275.23909 * 11 10 9 13 13 C 1.33712 * 122.44985 * 84.86846 * 12 11 10 14 14 S 1.70612 * 110.97550 * 179.71338 * 13 12 11 15 15 C 1.75830 * 91.57429 * 0.26622 * 14 13 12 16 16 C 1.43197 * 125.46146 * 180.02562 * 15 14 13 17 17 N 9.97268 * 99.71375 * 175.56128 * 5 1 2 18 18 C 1.36627 * 109.08197 * 359.97438 * 15 14 13 19 19 C 1.34772 * 120.00451 * 300.00175 * 10 9 8 20 20 O 1.21284 * 119.99556 * 4.77723 * 19 10 9 21 21 C 1.50696 * 120.00523 * 184.77617 * 19 10 9 22 22 C 1.52999 * 109.47375 * 174.95217 * 21 19 10 23 23 Si 1.86300 * 109.47044 * 180.02562 * 22 21 19 24 24 H 1.48498 * 109.47160 * 180.02562 * 23 22 21 25 25 H 1.48504 * 109.47060 * 300.00108 * 23 22 21 26 26 H 1.48502 * 109.47277 * 60.00121 * 23 22 21 27 27 C 1.37705 * 119.67889 * 359.84490 * 5 4 3 28 28 C 1.37976 * 120.11066 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47258 * 90.00444 * 1 2 3 30 30 H 1.09000 * 109.47519 * 209.99831 * 1 2 3 31 31 H 1.08996 * 109.47631 * 330.00274 * 1 2 3 32 32 H 1.07997 * 120.11734 * 0.14668 * 3 2 1 33 33 H 1.08000 * 119.72425 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.25583 * 42.24529 * 6 5 4 35 35 H 1.09000 * 109.22360 * 282.79456 * 6 5 4 36 36 H 1.09005 * 109.68096 * 291.34182 * 7 6 5 37 37 H 1.09000 * 109.71598 * 170.80616 * 7 6 5 38 38 H 1.09000 * 109.68441 * 170.34107 * 8 7 6 39 39 H 1.09000 * 109.71308 * 49.80394 * 8 7 6 40 40 H 1.08995 * 109.25338 * 290.83646 * 9 8 7 41 41 H 1.09003 * 109.47125 * 155.23996 * 11 10 9 42 42 H 1.08998 * 109.47346 * 35.23808 * 11 10 9 43 43 H 1.07997 * 124.51292 * 359.97438 * 13 12 11 44 44 H 1.08005 * 123.36671 * 179.97438 * 18 15 14 45 45 H 1.08998 * 109.47427 * 294.95970 * 21 19 10 46 46 H 1.09003 * 109.46984 * 54.95198 * 21 19 10 47 47 H 1.08995 * 109.47221 * 300.00013 * 22 21 19 48 48 H 1.09000 * 109.46739 * 60.00435 * 22 21 19 49 49 H 1.07997 * 119.73454 * 359.94557 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2005 1.1956 0.0000 4 6 3.5802 1.1873 -0.0026 5 6 4.2788 -0.0128 -0.0047 6 6 5.7837 0.0515 -0.0124 7 6 6.3807 -1.2876 0.4154 8 6 5.7370 -2.3952 -0.4271 9 6 4.2792 -2.5423 0.0039 10 7 3.5905 -3.4451 -0.9217 11 6 2.9822 -4.6810 -0.4229 12 6 4.0265 -5.7658 -0.3616 13 6 4.8441 -5.9163 0.6857 14 16 5.9011 -7.2348 0.4509 15 6 5.2030 -7.5761 -1.1263 16 6 5.6084 -8.6332 -2.0032 17 7 5.9899 9.7823 -0.7672 18 6 4.2109 -6.6718 -1.3809 19 6 3.5165 -3.1388 -2.2321 20 8 4.0933 -2.1614 -2.6598 21 6 2.7172 -4.0106 -3.1658 22 6 2.6926 -3.3779 -4.5586 23 14 1.7037 -4.4555 -5.7127 24 1 1.6803 -3.8417 -7.0648 25 1 2.3282 -5.8005 -5.7910 26 1 0.3150 -4.5834 -5.2026 27 6 3.5878 -1.2040 -0.0009 28 6 2.1992 -1.1936 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6642 2.1331 0.0024 33 1 4.1213 2.1220 -0.0030 34 1 6.1138 0.8288 0.6768 35 1 6.1274 0.2933 -1.0182 36 1 6.1729 -1.4617 1.4712 37 1 7.4581 -1.2796 0.2499 38 1 6.2649 -3.3347 -0.2635 39 1 5.7826 -2.1275 -1.4828 40 1 4.2422 -2.9617 1.0093 41 1 2.1793 -4.9872 -1.0936 42 1 2.5772 -4.5099 0.5744 43 1 4.8337 -5.2895 1.5651 44 1 3.6275 -6.6702 -2.2898 45 1 3.1758 -4.9978 -3.2232 46 1 1.6978 -4.1049 -2.7915 47 1 2.2338 -2.3909 -4.5013 48 1 3.7119 -3.2837 -4.9329 49 1 1.6567 -2.1274 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18166680_18175032_13179792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 9 2021 06:32:04 Heat of formation + Delta-G solvation = 373.732043 kcal Electronic energy + Delta-G solvation = -31164.847898 eV Core-core repulsion = 27277.182412 eV Total energy + Delta-G solvation = -3887.665486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 368.143 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -42.14761 -40.61063 -39.90793 -37.59335 -36.37962 -34.08611 -33.42752 -32.89949 -32.04284 -30.17196 -28.36442 -27.52727 -27.31689 -25.54368 -24.14205 -23.13105 -22.99572 -22.19977 -21.35591 -21.06984 -20.51615 -19.72418 -18.52878 -18.00535 -17.63424 -17.20208 -16.62241 -16.57234 -16.21691 -16.03305 -15.66702 -15.37765 -15.12581 -14.91311 -14.79352 -14.71642 -14.69053 -14.64865 -14.20754 -14.05587 -13.78158 -13.64531 -13.48753 -13.23001 -13.14846 -13.00202 -12.84530 -12.60471 -12.53460 -12.35679 -12.32165 -12.08170 -11.98289 -11.64494 -11.60443 -11.52671 -11.43048 -11.29170 -10.63174 -10.25905 -9.98403 -9.69060 -9.38069 -6.96869 -6.96837 -2.44450 -2.05780 -0.33274 -0.15339 -0.01117 0.28947 0.34793 0.77330 1.46032 1.55589 1.63404 1.68253 1.95859 2.24908 2.44127 2.53661 2.70306 3.12731 3.39977 3.43605 3.51101 3.59397 3.67519 3.78962 3.88347 3.88671 3.95353 3.97256 4.02943 4.08844 4.12905 4.15190 4.25821 4.33224 4.35776 4.39400 4.46322 4.54414 4.58255 4.63684 4.72253 4.72970 4.79825 4.80562 4.90770 4.94159 4.96297 4.99264 5.08397 5.20851 5.23549 5.39523 5.40952 5.53479 5.60658 5.64519 6.04187 6.31802 7.23063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.140 4.140 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.089 4.089 7 C -0.111 4.111 8 C -0.126 4.126 9 C 0.202 3.798 10 N -0.607 5.607 11 C 0.146 3.854 12 C -0.174 4.174 13 C -0.127 4.127 14 S 0.407 5.593 15 C -0.596 4.596 16 C 0.869 3.131 17 N -1.000 6.000 18 C 0.088 3.912 19 C 0.507 3.493 20 O -0.559 6.559 21 C -0.132 4.132 22 C -0.343 4.343 23 Si 1.003 2.997 24 H -0.312 1.312 25 H -0.227 1.227 26 H -0.270 1.270 27 C -0.086 4.086 28 C -0.107 4.107 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.211 0.789 44 H 0.214 0.786 45 H 0.136 0.864 46 H 0.126 0.874 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 -90.980 0.997 91.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.158 4.158 4 C -0.166 4.166 5 C -0.079 4.079 6 C -0.126 4.126 7 C -0.149 4.149 8 C -0.164 4.164 9 C 0.099 3.901 10 N -0.339 5.339 11 C 0.022 3.978 12 C -0.185 4.185 13 C -0.267 4.267 14 S 0.687 5.313 15 C -0.708 4.708 16 C 0.858 3.142 17 N -1.000 6.000 18 C 0.048 3.952 19 C 0.297 3.703 20 O -0.436 6.436 21 C -0.171 4.171 22 C -0.435 4.435 23 Si 0.831 3.169 24 H -0.240 1.240 25 H -0.150 1.150 26 H -0.194 1.194 27 C -0.087 4.087 28 C -0.125 4.125 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.137 0.863 43 H 0.228 0.772 44 H 0.231 0.769 45 H 0.154 0.846 46 H 0.144 0.856 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.532 -91.565 1.282 91.686 hybrid contribution -1.185 4.067 0.286 4.246 sum -5.717 -87.498 1.568 87.699 Atomic orbital electron populations 1.20799 0.89666 1.03622 1.02681 1.20154 0.97278 0.93133 0.99724 1.21190 0.94318 0.98818 1.01518 1.21358 0.95022 0.98329 1.01896 1.19732 0.95918 0.92696 0.99547 1.20514 0.90841 1.00032 1.01199 1.21489 1.00170 0.92773 1.00441 1.21919 0.94122 0.99147 1.01256 1.19794 0.90381 0.85726 0.94235 1.48246 1.56886 1.22019 1.06750 1.20801 0.92454 0.79296 1.05201 1.19719 1.02952 1.01373 0.94463 1.26982 0.95340 1.00489 1.03926 1.84929 1.26339 1.18048 1.01947 1.28551 1.15133 1.15834 1.11325 1.84731 0.24701 0.62021 0.42741 2.00000 1.44397 1.20276 1.35327 1.21711 0.88826 0.85323 0.99337 1.21471 0.80511 0.85683 0.82683 1.90794 1.46093 1.30165 1.76515 1.21714 1.02623 1.00047 0.92763 1.25101 1.08494 1.07007 1.02849 0.84560 0.78022 0.78531 0.75774 1.23953 1.14967 1.19430 1.19953 0.93747 0.94750 1.00268 1.21145 0.93248 0.97753 1.00330 0.91039 0.89250 0.92237 0.86956 0.87836 0.91747 0.92528 0.90222 0.90647 0.89123 0.91720 0.85453 0.84644 0.86290 0.77219 0.76914 0.84592 0.85606 0.91983 0.90101 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.02 71.24 0.71 1.08 16 2 C -0.10 -0.15 5.87 -19.93 -0.12 -0.27 16 3 C -0.14 -1.15 9.71 22.20 0.22 -0.94 16 4 C -0.15 -1.45 9.61 22.36 0.21 -1.24 16 5 C -0.08 -0.31 5.74 -19.86 -0.11 -0.42 16 6 C -0.09 -0.17 5.67 29.74 0.17 0.00 16 7 C -0.11 0.88 5.98 30.62 0.18 1.06 16 8 C -0.13 1.66 5.27 30.62 0.16 1.82 16 9 C 0.20 -3.26 2.53 44.14 0.11 -3.15 16 10 N -0.61 13.96 1.56 -806.94 -1.26 12.70 16 11 C 0.15 -5.13 5.55 85.64 0.48 -4.66 16 12 C -0.17 7.02 5.36 -21.04 -0.11 6.91 16 13 C -0.13 5.11 10.68 66.79 0.71 5.83 16 14 S 0.41 -17.62 23.07 -56.49 -1.30 -18.92 16 15 C -0.60 29.53 6.32 23.14 0.15 29.68 16 16 C 0.87 -50.77 25.63 69.07 1.77 -49.00 16 17 N -1.00 -77.26 30.19 37.02 1.12 -76.14 16 18 C 0.09 -4.08 9.73 21.74 0.21 -3.87 16 19 C 0.51 -8.04 6.84 87.66 0.60 -7.44 16 20 O -0.56 0.97 13.15 -3.04 -0.04 0.93 16 21 C -0.13 3.22 3.57 29.85 0.11 3.33 16 22 C -0.34 5.19 3.75 71.98 0.27 5.46 16 23 Si 1.00 -16.04 29.30 68.60 2.01 -14.02 16 24 H -0.31 1.80 7.11 99.48 0.71 2.51 16 25 H -0.23 4.98 7.11 99.48 0.71 5.69 16 26 H -0.27 3.82 7.11 99.48 0.71 4.52 16 27 C -0.09 0.36 4.38 -19.86 -0.09 0.28 16 28 C -0.11 0.52 8.65 22.36 0.19 0.72 16 29 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 30 H 0.09 -0.78 8.09 -2.39 -0.02 -0.80 16 31 H 0.06 -0.07 8.09 -2.39 -0.02 -0.08 16 32 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.10 1.27 8.05 -2.91 -0.02 1.25 16 34 H 0.06 0.25 8.13 -2.38 -0.02 0.23 16 35 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 -0.86 8.10 -2.38 -0.02 -0.88 16 37 H 0.07 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.09 -1.89 8.14 -2.39 -0.02 -1.91 16 39 H 0.06 -0.30 5.76 -2.39 -0.01 -0.31 16 40 H 0.13 -2.99 7.85 -2.39 -0.02 -3.01 16 41 H 0.14 -5.41 6.10 -2.39 -0.01 -5.42 16 42 H 0.12 -4.35 8.03 -2.39 -0.02 -4.37 16 43 H 0.21 -8.68 8.06 -2.91 -0.02 -8.70 16 44 H 0.21 -11.15 6.58 -2.91 -0.02 -11.17 16 45 H 0.14 -4.93 6.14 -2.39 -0.01 -4.94 16 46 H 0.13 -3.68 7.16 -2.39 -0.02 -3.70 16 47 H 0.06 -0.50 7.96 -2.39 -0.02 -0.52 16 48 H 0.08 -1.02 7.87 -2.39 -0.02 -1.04 16 49 H 0.15 -2.06 7.62 -2.91 -0.02 -2.08 16 Total: 0.00 -152.72 429.66 8.07 -144.65 By element: Atomic # 1 Polarization: -36.08 SS G_CDS: 1.72 Total: -34.37 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.82 Total: -14.83 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.14 Total: -63.44 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: -0.04 Total: 0.93 kcal Atomic # 14 Polarization: -16.04 SS G_CDS: 2.01 Total: -14.02 kcal Atomic # 16 Polarization: -17.62 SS G_CDS: -1.30 Total: -18.92 kcal Total: -152.72 8.07 -144.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18166680_18175032_13179792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 518.384 kcal (2) G-P(sol) polarization free energy of solvation -152.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 365.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -144.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 373.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds