Wall clock time and date at job start Wed Apr 14 2021 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21285 * 1 3 3 C 1.50698 * 119.99788 * 2 1 4 4 C 1.53000 * 109.47469 * 0.02562 * 3 2 1 5 5 Si 1.86300 * 109.47367 * 179.97438 * 4 3 2 6 6 H 1.48492 * 109.47095 * 179.97438 * 5 4 3 7 7 H 1.48507 * 109.46746 * 299.99818 * 5 4 3 8 8 H 1.48504 * 109.47117 * 59.99213 * 5 4 3 9 9 N 1.34775 * 119.99998 * 179.73163 * 2 1 3 10 10 C 1.46929 * 120.63085 * 180.27335 * 9 2 1 11 11 C 1.53194 * 108.77426 * 126.39137 * 10 9 2 12 12 C 1.53039 * 109.31175 * 54.63594 * 11 10 9 13 13 C 1.53002 * 109.46124 * 178.61354 * 12 11 10 14 14 N 1.46907 * 109.46983 * 298.07132 * 13 12 11 15 15 C 1.46900 * 110.99760 * 307.95243 * 14 13 12 16 16 C 1.53242 * 109.33588 * 172.74660 * 15 14 13 17 17 N 1.47072 * 108.52153 * 53.83120 * 16 15 14 18 18 C 1.34778 * 120.88233 * 128.83586 * 17 16 15 19 19 O 1.21277 * 119.99908 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.99943 * 180.02562 * 18 17 16 21 Xx 1.81001 * 109.46809 * 180.02562 * 20 18 17 22 21 F 9.40853 * 150.71098 * 315.89456 * 13 1 2 23 22 F 1.61004 * 90.00123 * 134.99863 * 21 20 18 24 23 F 1.60994 * 90.00145 * 314.99606 * 21 20 18 25 24 F 1.60999 * 89.99833 * 224.99684 * 21 20 18 26 25 F 1.60999 * 90.00167 * 44.99684 * 21 20 18 27 26 C 1.47086 * 118.23777 * 308.81409 * 17 16 15 28 27 C 1.46893 * 110.99808 * 183.64934 * 14 13 12 29 28 C 1.53045 * 109.53887 * 298.63445 * 12 11 10 30 29 C 1.46923 * 120.62954 * 359.97438 * 9 2 1 31 30 H 1.09002 * 109.46834 * 120.00642 * 3 2 1 32 31 H 1.08995 * 109.47500 * 239.99977 * 3 2 1 33 32 H 1.09007 * 109.46538 * 299.99603 * 4 3 2 34 33 H 1.08995 * 109.47425 * 59.99139 * 4 3 2 35 34 H 1.08995 * 109.58615 * 246.17912 * 10 9 2 36 35 H 1.08998 * 109.58633 * 6.60710 * 10 9 2 37 36 H 1.08995 * 109.49723 * 174.58533 * 11 10 9 38 37 H 1.09006 * 109.49872 * 294.68450 * 11 10 9 39 38 H 1.08998 * 109.46012 * 58.64202 * 12 11 10 40 39 H 1.09002 * 109.46793 * 58.06800 * 13 12 11 41 40 H 1.08993 * 109.47135 * 178.06877 * 13 12 11 42 41 H 1.08989 * 109.49313 * 292.70631 * 15 14 13 43 42 H 1.09002 * 109.49386 * 52.79055 * 15 14 13 44 43 H 1.08997 * 109.62351 * 173.54254 * 16 15 14 45 44 H 1.09005 * 109.62810 * 294.11610 * 16 15 14 46 45 H 1.09003 * 109.47030 * 299.99825 * 20 18 17 47 46 H 1.09001 * 109.47358 * 59.99936 * 20 18 17 48 47 H 1.08996 * 109.62863 * 170.89509 * 27 17 16 49 48 H 1.08997 * 109.62397 * 291.47463 * 27 17 16 50 49 H 1.08995 * 109.49887 * 307.21386 * 28 14 13 51 50 H 1.09006 * 109.49291 * 67.29316 * 28 14 13 52 51 H 1.09003 * 109.49342 * 181.32080 * 29 12 11 53 52 H 1.08997 * 109.49660 * 301.41156 * 29 12 11 54 53 H 1.08996 * 109.66331 * 353.54284 * 30 9 2 55 54 H 1.08998 * 109.26553 * 113.80934 * 30 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 6 1.9663 1.3051 0.0000 4 6 0.9721 2.4681 0.0006 5 14 1.9035 4.0815 0.0014 6 1 0.9386 5.2101 0.0014 7 1 2.7573 4.1595 1.2140 8 1 2.7574 4.1607 -1.2110 9 7 1.8867 -1.1672 0.0055 10 6 3.3559 -1.1833 0.0116 11 6 3.8346 -2.0466 1.1831 12 6 3.1912 -3.4318 1.0872 13 6 3.6938 -4.3080 2.2363 14 7 5.1487 -4.4772 2.1229 15 6 5.5215 -4.9421 0.7802 16 6 7.0479 -4.9323 0.6455 17 7 7.6198 -5.7110 1.7543 18 6 8.5167 -6.6898 1.5219 19 8 8.8620 -6.9387 0.3862 20 6 9.0896 -7.4758 2.6730 21 9 11.2932 -9.8031 1.4795 22 9 11.3032 -8.3084 3.1977 23 9 9.2094 -9.1059 0.8851 24 9 9.6088 -9.8177 3.0106 25 9 10.9038 -7.5965 1.0721 26 6 7.1874 -5.3930 3.1237 27 6 5.6555 -5.3847 3.1609 28 6 1.6694 -3.2966 1.1770 29 6 1.1661 -2.4475 0.0120 30 1 2.5930 1.3628 0.8900 31 1 2.5929 1.3629 -0.8899 32 1 0.3451 2.4105 -0.8892 33 1 0.3457 2.4101 0.8907 34 1 3.7206 -1.6042 -0.9254 35 1 3.7320 -0.1670 0.1290 36 1 4.9193 -2.1457 1.1426 37 1 3.5467 -1.5760 2.1233 38 1 3.4592 -3.8916 0.1359 39 1 3.4565 -3.8312 3.1874 40 1 3.2097 -5.2833 2.1881 41 1 5.1496 -5.9555 0.6300 42 1 5.0860 -4.2798 0.0320 43 1 7.3345 -5.3831 -0.3046 44 1 7.4130 -3.9062 0.6920 45 1 9.6083 -6.7993 3.3524 46 1 8.2832 -7.9789 3.2066 47 1 7.5663 -6.1484 3.8121 48 1 7.5660 -4.4113 3.4085 49 1 5.3173 -5.0434 4.1393 50 1 5.2818 -6.3921 2.9775 51 1 1.2131 -4.2856 1.1321 52 1 1.4019 -2.8144 2.1171 53 1 0.0975 -2.2664 0.1270 54 1 1.3514 -2.9693 -0.9269 RHF calculation, no. of doubly occupied orbitals= 77 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275592_15865522_15845322_18081600.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 14 2021 02:43:54 Heat of formation + Delta-G solvation = 306.013755 kcal Electronic energy + Delta-G solvation = -40644.853978 eV Core-core repulsion = 34593.832708 eV Total energy + Delta-G solvation = -6051.021270 eV No. of doubly occupied orbitals = 77 Molecular weight (most abundant/longest-lived isotopes) = 405.196 amu Computer time = 38.59 seconds Orbital eigenvalues (eV) -44.33309 -44.08939 -44.07334 -43.90721 -43.38943 -41.68960 -41.20991 -39.72065 -38.33179 -36.26691 -34.28391 -33.47802 -32.80712 -31.87553 -30.91477 -29.15772 -27.01494 -25.25164 -24.81638 -24.06154 -23.36412 -22.35139 -21.10131 -20.20903 -19.77698 -18.90486 -18.22965 -17.51813 -17.32549 -16.87943 -16.82007 -16.31511 -16.08480 -15.95334 -15.61670 -15.55569 -15.32523 -15.24512 -15.04606 -15.01567 -14.81813 -14.65799 -14.63215 -14.27622 -14.25657 -14.19897 -14.16151 -14.00673 -13.87844 -13.84684 -13.74295 -13.51105 -13.47813 -13.41219 -13.35786 -13.21083 -13.03113 -12.74312 -12.66523 -12.38151 -12.32476 -12.22796 -12.15894 -12.15088 -11.94838 -11.77329 -11.63257 -11.62136 -11.47138 -11.43965 -11.35263 -11.28012 -11.23640 -10.62539 -10.11738 -9.60718 -9.28274 -5.11095 -4.66351 -2.89854 0.89376 1.07623 1.50078 1.65701 1.67315 1.69756 2.01988 2.26074 2.40832 2.80951 2.91568 3.04284 3.66576 3.68531 3.72442 3.81888 3.90861 4.01541 4.06426 4.12052 4.18598 4.22629 4.24232 4.31539 4.38036 4.40407 4.45022 4.54909 4.67055 4.69650 4.73287 4.74874 4.80642 4.87788 4.89483 4.92749 4.98349 5.01649 5.07312 5.08640 5.13383 5.15430 5.31934 5.40767 5.52680 5.65709 5.74122 6.02106 6.06260 6.45745 6.48723 7.23194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.592 6.592 2 C 0.506 3.494 3 C -0.133 4.133 4 C -0.339 4.339 5 Si 1.016 2.984 6 H -0.290 1.290 7 H -0.264 1.264 8 H -0.268 1.268 9 N -0.613 5.613 10 C 0.095 3.905 11 C -0.113 4.113 12 C -0.085 4.085 13 C 0.067 3.933 14 N -0.531 5.531 15 C 0.039 3.961 16 C 0.121 3.879 17 N -0.590 5.590 18 C 0.458 3.542 19 O -0.512 6.512 20 C 0.366 3.634 21 F -0.224 7.224 22 F -0.179 7.179 23 F -0.135 7.135 24 F -0.182 7.182 25 F -0.131 7.131 26 C 0.091 3.909 27 C 0.032 3.968 28 C -0.121 4.121 29 C 0.108 3.892 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.242 0.758 46 H 0.237 0.763 47 H 0.124 0.876 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.041 0.959 51 H 0.079 0.921 52 H 0.059 0.941 53 H 0.064 0.936 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 7.722 8.066 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.473 6.473 2 C 0.296 3.704 3 C -0.172 4.172 4 C -0.430 4.430 5 Si 0.844 3.156 6 H -0.216 1.216 7 H -0.188 1.188 8 H -0.192 1.192 9 N -0.347 5.347 10 C -0.026 4.026 11 C -0.151 4.151 12 C -0.104 4.104 13 C -0.060 4.060 14 N -0.256 5.256 15 C -0.090 4.090 16 C 0.000 4.000 17 N -0.326 5.326 18 C 0.242 3.758 19 O -0.386 6.386 20 C 0.323 3.677 21 F -0.224 7.224 22 F -0.178 7.178 23 F -0.134 7.134 24 F -0.181 7.181 25 F -0.129 7.129 26 C -0.029 4.029 27 C -0.097 4.097 28 C -0.159 4.159 29 C -0.015 4.015 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.259 0.741 46 H 0.254 0.746 47 H 0.142 0.858 48 H 0.136 0.864 49 H 0.131 0.869 50 H 0.059 0.941 51 H 0.097 0.903 52 H 0.078 0.922 53 H 0.082 0.918 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.454 8.872 7.515 12.129 hybrid contribution -0.654 -1.944 -0.716 2.173 sum -4.109 6.928 6.799 10.540 Atomic orbital electron populations 1.90681 1.16452 1.88038 1.52141 1.21398 0.87689 0.86705 0.74581 1.21566 0.99110 0.89846 1.06722 1.25104 1.04479 1.07407 1.06047 0.84344 0.77377 0.74323 0.79565 1.21605 1.18803 1.19200 1.48331 1.08344 1.05322 1.72658 1.22135 0.77207 1.03190 1.00095 1.21837 1.02013 0.93652 0.97645 1.21239 0.93564 0.96541 0.99045 1.22083 0.86308 0.98132 0.99517 1.62011 1.12825 1.47991 1.02779 1.22594 0.94340 0.99484 0.92577 1.21937 0.92381 0.96441 0.89244 1.48256 1.40503 1.32752 1.11087 1.20537 0.82087 0.82384 0.90793 1.91104 1.58204 1.65564 1.23716 1.32933 0.76254 0.70971 0.87544 2.00000 1.55564 1.67269 1.99549 1.99919 1.73293 1.57223 1.87337 1.99910 1.34793 1.83861 1.94813 1.99919 1.45140 1.78051 1.94995 1.99910 1.73490 1.41112 1.98424 1.22613 0.95310 1.05629 0.79343 1.22612 0.94244 0.95393 0.97438 1.21755 0.96378 0.99932 0.97876 1.21443 0.96948 0.83854 0.99222 0.86030 0.86261 0.90438 0.90287 0.90203 0.87646 0.88011 0.91946 0.90311 0.89809 0.94974 0.95303 0.87538 0.90088 0.88021 0.74120 0.74638 0.85849 0.86402 0.86864 0.94063 0.90283 0.92192 0.91758 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 541. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.59 -7.03 15.40 -3.04 -0.05 -7.08 16 2 C 0.51 0.88 7.70 87.66 0.67 1.56 16 3 C -0.13 0.74 3.42 29.85 0.10 0.84 16 4 C -0.34 0.78 3.74 71.98 0.27 1.05 16 5 Si 1.02 -3.64 29.30 68.60 2.01 -1.63 16 6 H -0.29 -0.41 7.11 99.48 0.71 0.30 16 7 H -0.26 0.85 7.11 99.48 0.71 1.56 16 8 H -0.27 0.70 7.11 99.48 0.71 1.40 16 9 N -0.61 2.23 2.98 -819.89 -2.44 -0.21 16 10 C 0.10 -1.08 6.35 86.36 0.55 -0.53 16 11 C -0.11 1.51 5.18 30.67 0.16 1.67 16 12 C -0.09 1.06 1.67 -10.77 -0.02 1.04 16 13 C 0.07 -0.93 4.54 86.30 0.39 -0.54 16 14 N -0.53 8.51 4.03 -895.27 -3.61 4.90 16 15 C 0.04 -0.53 5.16 86.38 0.45 -0.09 16 16 C 0.12 -1.51 6.60 86.35 0.57 -0.94 16 17 N -0.59 9.07 3.01 -817.95 -2.46 6.61 16 18 C 0.46 -4.10 7.03 87.66 0.62 -3.48 16 19 O -0.51 -2.39 11.92 -3.02 -0.04 -2.42 16 20 C 0.37 -5.54 3.83 71.24 0.27 -5.27 16 21 F -0.22 -5.25 16.66 44.97 0.75 -4.51 16 22 F -0.18 -1.32 15.88 44.97 0.71 -0.60 16 23 F -0.14 -1.77 13.71 44.97 0.62 -1.16 16 24 F -0.18 -1.39 15.87 44.97 0.71 -0.68 16 25 F -0.13 -1.68 13.71 44.97 0.62 -1.06 16 26 C 0.09 -2.16 6.50 86.35 0.56 -1.60 16 27 C 0.03 -0.62 5.62 86.38 0.49 -0.14 16 28 C -0.12 0.96 5.34 30.50 0.16 1.12 16 29 C 0.11 -0.32 6.40 86.19 0.55 0.23 16 30 H 0.12 -1.31 7.50 -2.39 -0.02 -1.33 16 31 H 0.12 -1.23 7.78 -2.39 -0.02 -1.24 16 32 H 0.08 0.02 7.92 -2.38 -0.02 0.00 16 33 H 0.08 -0.01 7.92 -2.39 -0.02 -0.03 16 34 H 0.08 -1.02 8.14 -2.39 -0.02 -1.04 16 35 H 0.11 -1.54 5.93 -2.39 -0.01 -1.55 16 36 H 0.10 -1.56 7.55 -2.39 -0.02 -1.58 16 37 H 0.06 -0.69 8.14 -2.38 -0.02 -0.71 16 38 H 0.08 -0.97 6.04 -2.39 -0.01 -0.99 16 39 H 0.08 -1.13 8.14 -2.39 -0.02 -1.15 16 40 H 0.03 -0.39 8.14 -2.39 -0.02 -0.40 16 41 H 0.03 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.11 -1.55 5.67 -2.39 -0.01 -1.56 16 43 H 0.08 -0.55 7.06 -2.39 -0.02 -0.56 16 44 H 0.10 -1.48 8.14 -2.38 -0.02 -1.50 16 45 H 0.24 -6.62 7.50 -2.39 -0.02 -6.64 16 46 H 0.24 -6.35 7.17 -2.39 -0.02 -6.37 16 47 H 0.12 -4.02 6.02 -2.39 -0.01 -4.03 16 48 H 0.12 -2.97 8.14 -2.39 -0.02 -2.99 16 49 H 0.11 -2.47 8.11 -2.39 -0.02 -2.49 16 50 H 0.04 -0.74 8.14 -2.38 -0.02 -0.76 16 51 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 52 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 53 H 0.06 0.21 7.01 -2.39 -0.02 0.19 16 54 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: 0.00 -52.39 431.61 4.29 -48.11 By element: Atomic # 1 Polarization: -36.86 SS G_CDS: 1.67 Total: -35.19 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.79 Total: -5.09 kcal Atomic # 7 Polarization: 19.82 SS G_CDS: -8.51 Total: 11.30 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.08 Total: -9.50 kcal Atomic # 9 Polarization: -11.41 SS G_CDS: 3.41 Total: -8.00 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.01 Total: -1.63 kcal Total: -52.39 4.29 -48.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275592_15865522_15845322_18081600.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 354.121 kcal (2) G-P(sol) polarization free energy of solvation -52.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 301.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 306.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.59 seconds