Wall clock time and date at job start Wed Apr 14 2021 11:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39633 * 120.14894 * 206.26680 * 3 2 1 5 5 C 1.37950 * 119.84315 * 180.02562 * 4 3 2 6 6 C 1.38356 * 120.15460 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.85091 * 179.97438 * 6 5 4 8 8 N 1.46491 * 109.47488 * 96.25515 * 7 6 5 9 9 C 1.46500 * 120.00129 * 84.06172 * 8 7 6 10 10 C 1.50702 * 109.46920 * 89.99860 * 9 8 7 11 11 C 1.38343 * 119.85891 * 269.72647 * 10 9 8 12 12 C 1.37973 * 120.14158 * 179.72567 * 11 10 9 13 13 C 1.39538 * 119.85502 * 0.54841 * 12 11 10 14 14 C 1.43199 * 120.14431 * 179.74629 * 13 12 11 15 15 C 9.32171 * 154.15678 * 86.01243 * 6 1 2 16 16 C 9.40545 * 150.97355 * 90.09587 * 7 1 2 17 17 C 1.52994 * 117.50526 * 24.94900 * 16 15 14 18 18 C 1.53002 * 117.50112 * 316.28878 * 16 15 14 19 19 C 1.39544 * 119.71622 * 359.73179 * 13 12 11 20 20 C 1.37972 * 119.85526 * 359.97438 * 19 13 12 21 21 C 1.34778 * 120.00504 * 263.79163 * 8 7 6 22 22 O 1.21279 * 120.00473 * 185.02618 * 21 8 7 23 23 C 1.50703 * 119.99418 * 5.02057 * 21 8 7 24 24 C 1.52999 * 109.46717 * 175.72658 * 23 21 8 25 25 Si 1.86302 * 109.47022 * 180.02562 * 24 23 21 26 26 H 1.48503 * 109.47156 * 179.97438 * 25 24 23 27 27 H 1.48494 * 109.47194 * 299.99906 * 25 24 23 28 28 H 1.48503 * 109.46953 * 59.99905 * 25 24 23 29 29 C 1.38366 * 120.30236 * 0.23567 * 6 5 4 30 30 C 1.37946 * 120.15465 * 359.48557 * 29 6 5 31 31 H 1.07999 * 120.08182 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.92066 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46792 * 336.25667 * 7 6 5 34 34 H 1.08996 * 109.47068 * 216.26398 * 7 6 5 35 35 H 1.08997 * 109.47752 * 210.00078 * 9 8 7 36 36 H 1.09007 * 109.47213 * 330.00340 * 9 8 7 37 37 H 1.07998 * 119.92929 * 0.02562 * 11 10 9 38 38 H 1.08004 * 120.07194 * 180.27747 * 12 11 10 39 39 H 1.09000 * 115.54759 * 170.62542 * 16 15 14 40 40 H 1.09003 * 117.49353 * 0.02562 * 17 16 15 41 41 H 1.08996 * 117.50022 * 145.01568 * 17 16 15 42 42 H 1.09004 * 117.50128 * 214.98517 * 18 16 15 43 43 H 1.08999 * 117.49607 * 359.97438 * 18 16 15 44 44 H 1.08001 * 120.06950 * 179.97438 * 19 13 12 45 45 H 1.07999 * 119.92629 * 180.02562 * 20 19 13 46 46 H 1.09003 * 109.47322 * 295.71829 * 23 21 8 47 47 H 1.08993 * 109.47452 * 55.72878 * 23 21 8 48 48 H 1.08997 * 109.47388 * 299.99858 * 24 23 21 49 49 H 1.08998 * 109.47668 * 60.00000 * 24 23 21 50 50 H 1.08006 * 119.91991 * 179.72331 * 29 6 5 51 51 H 1.07993 * 120.08124 * 180.25683 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.0837 0.5344 5 6 4.6483 1.0780 0.5306 6 6 5.3374 0.0026 -0.0014 7 6 6.8444 0.0038 -0.0025 8 7 7.3341 -0.7389 1.1614 9 6 7.4557 -2.1976 1.1014 10 6 8.8293 -2.5672 0.6036 11 6 9.0499 -2.7290 -0.7525 12 6 10.3065 -3.0618 -1.2150 13 6 11.3532 -3.2463 -0.3109 14 6 12.6585 -3.5971 -0.7838 15 6 13.7259 -0.2758 -4.0572 16 6 15.0668 0.0160 -4.5691 17 6 16.1069 -1.1042 -4.5045 18 6 16.2094 0.0915 -3.5544 19 6 11.1226 -3.0872 1.0561 20 6 9.8628 -2.7484 1.5053 21 6 7.6781 -0.0798 2.2855 22 8 8.1689 -0.6830 3.2162 23 6 7.4531 1.4070 2.3860 24 6 7.8268 1.8855 3.7903 25 14 7.5478 3.7234 3.9148 26 1 7.9100 4.1878 5.2780 27 1 8.3928 4.4213 2.9128 28 1 6.1177 4.0258 3.6529 29 6 4.6492 -1.0714 -0.5374 30 6 3.2698 -1.0815 -0.5350 31 1 2.7322 1.9243 0.9489 32 1 5.1916 1.9152 0.9432 33 1 7.2069 1.0308 0.0430 34 1 7.2074 -0.4696 -0.9147 35 1 7.3051 -2.6161 2.0965 36 1 6.7032 -2.5973 0.4215 37 1 8.2380 -2.5899 -1.4509 38 1 10.4786 -3.1835 -2.2743 39 1 15.1071 0.6915 -5.4236 40 1 15.7931 -2.0585 -4.0815 41 1 16.8316 -1.1654 -5.3164 42 1 17.0016 0.8165 -3.7415 43 1 15.9631 -0.0755 -2.5058 44 1 11.9285 -3.2291 1.7610 45 1 9.6831 -2.6246 2.5630 46 1 8.0737 1.9189 1.6506 47 1 6.4035 1.6294 2.1937 48 1 7.2062 1.3736 4.5258 49 1 8.8763 1.6632 3.9827 50 1 5.1934 -1.9056 -0.9552 51 1 2.7339 -1.9223 -0.9500 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18167044_16729622_13179792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 14 2021 11:37:12 Heat of formation + Delta-G solvation = 379.510341 kcal Electronic energy + Delta-G solvation = -30827.035345 eV Core-core repulsion = 26749.553517 eV Total energy + Delta-G solvation = -4077.481828 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 372.170 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.24680 -40.14283 -39.39163 -39.09043 -37.72484 -36.50362 -34.03085 -32.96546 -31.98727 -31.93257 -31.17547 -28.36795 -28.19923 -27.32783 -24.77651 -23.93219 -23.63389 -23.48837 -22.91407 -22.61475 -20.31723 -20.02656 -19.79988 -19.53840 -18.02380 -17.31185 -17.11343 -16.98221 -16.33761 -16.16548 -15.90756 -15.62530 -15.44517 -15.25122 -15.24918 -15.10178 -14.89187 -14.63568 -14.43433 -14.28825 -14.00755 -13.98094 -13.79666 -13.35415 -13.11764 -13.09982 -13.01940 -12.94339 -12.90411 -12.84890 -12.73998 -12.58885 -12.32018 -12.18089 -12.14783 -12.00202 -11.79232 -11.53424 -11.44702 -11.34597 -10.63922 -10.00323 -9.91960 -9.83331 -9.74902 -9.46258 -9.46233 -6.13101 -1.98134 -1.93167 -0.24906 0.44845 1.03846 1.07956 1.34447 1.54204 1.59116 1.69655 1.73774 1.82817 1.85435 1.88507 2.13777 2.14142 2.48364 2.66499 2.86379 2.96689 3.01451 3.48027 3.49896 3.81355 3.83640 3.89680 3.99440 4.11262 4.20787 4.23542 4.30489 4.35698 4.38726 4.39179 4.45637 4.56454 4.57985 4.63079 4.63544 4.66490 4.74462 4.81278 4.84147 4.89939 4.92715 5.03890 5.12227 5.18306 5.27232 5.38256 5.44897 5.48001 5.54529 5.74972 5.88921 5.89957 5.94032 6.22278 6.27850 6.35532 6.42078 6.64477 6.94508 7.41725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.277 3.723 3 C -0.045 4.045 4 C -0.066 4.066 5 C -0.112 4.112 6 C -0.071 4.071 7 C 0.139 3.861 8 N -0.598 5.598 9 C 0.193 3.807 10 C -0.302 4.302 11 C -0.025 4.025 12 C -0.285 4.285 13 C -0.172 4.172 14 C -0.264 4.264 15 C 0.870 3.130 16 C -0.495 4.495 17 C -0.090 4.090 18 C -0.092 4.092 19 C -0.330 4.330 20 C -0.030 4.030 21 C 0.502 3.498 22 O -0.589 6.589 23 C -0.135 4.135 24 C -0.347 4.347 25 Si 1.019 2.981 26 H -0.292 1.292 27 H -0.257 1.257 28 H -0.253 1.253 29 C -0.109 4.109 30 C -0.069 4.069 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.231 0.769 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.145 0.855 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.355 16.006 -24.577 35.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.037 4.037 3 C -0.049 4.049 4 C -0.087 4.087 5 C -0.130 4.130 6 C -0.074 4.074 7 C 0.017 3.983 8 N -0.328 5.328 9 C 0.071 3.929 10 C -0.303 4.303 11 C -0.043 4.043 12 C -0.304 4.304 13 C -0.172 4.172 14 C -0.264 4.264 15 C 0.870 3.130 16 C -0.511 4.511 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.349 4.349 20 C -0.049 4.049 21 C 0.292 3.708 22 O -0.469 6.469 23 C -0.174 4.174 24 C -0.438 4.438 25 Si 0.845 3.155 26 H -0.218 1.218 27 H -0.181 1.181 28 H -0.177 1.177 29 C -0.127 4.127 30 C -0.089 4.089 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.246 0.754 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.162 0.838 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.696 16.614 -24.033 34.157 hybrid contribution 0.596 -0.525 0.677 1.043 sum 18.292 16.089 -23.356 33.749 Atomic orbital electron populations 1.81308 1.13770 1.09299 1.10548 1.26135 0.93059 0.92292 0.92215 1.16162 0.82934 0.98840 1.06949 1.21393 0.94679 0.96647 0.95955 1.21363 0.93291 0.99286 0.99069 1.20650 0.96503 0.94262 0.95938 1.20814 0.88574 0.99535 0.89344 1.48319 1.63672 1.07096 1.13740 1.19779 0.93631 0.79876 0.99591 1.19081 0.95793 1.21942 0.93478 1.20609 0.95442 0.94319 0.93970 1.19871 0.93429 1.20310 0.96745 1.21100 1.01342 1.00246 0.94497 1.81358 0.92187 1.34207 0.18674 1.86392 0.85692 0.18009 0.22869 1.26605 0.99866 1.12852 1.11728 1.23956 0.92298 0.92910 1.03435 1.23920 0.91051 1.01536 0.96255 1.19654 0.96928 1.24435 0.93834 1.20487 0.93211 0.94345 0.96836 1.21520 0.76489 0.91337 0.81461 1.90671 1.45189 1.70904 1.40173 1.21730 1.05749 0.90308 0.99589 1.25251 1.05282 1.14774 0.98481 0.84346 0.80163 0.72283 0.78728 1.21763 1.18090 1.17686 1.21213 0.93262 0.98750 0.99514 1.21327 0.94592 0.96638 0.96373 0.83418 0.82144 0.86206 0.87891 0.94312 0.88850 0.85359 0.87521 0.75363 0.83881 0.83571 0.83624 0.84187 0.92993 0.91140 0.85726 0.86120 0.90818 0.91109 0.83755 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -6.27 18.54 19.00 0.35 -5.92 16 2 C 0.28 1.93 15.33 88.33 1.35 3.28 16 3 C -0.05 -0.04 5.73 -21.36 -0.12 -0.16 16 4 C -0.07 0.19 9.76 22.54 0.22 0.41 16 5 C -0.11 0.57 8.95 22.23 0.20 0.77 16 6 C -0.07 0.22 5.46 -19.81 -0.11 0.12 16 7 C 0.14 -0.30 5.37 85.63 0.46 0.16 16 8 N -0.60 -5.14 2.44 -830.51 -2.03 -7.16 16 9 C 0.19 2.96 5.50 85.63 0.47 3.43 16 10 C -0.30 -6.96 5.47 -19.81 -0.11 -7.07 16 11 C -0.03 -0.49 9.68 22.23 0.22 -0.27 16 12 C -0.29 -6.78 9.75 22.52 0.22 -6.56 16 13 C -0.17 -5.37 5.72 -21.40 -0.12 -5.49 16 14 C -0.26 -7.10 25.13 69.07 1.74 -5.37 16 15 C 0.87 -37.46 25.31 69.96 1.77 -35.68 16 16 C -0.50 19.70 6.19 -12.81 -0.08 19.62 16 17 C -0.09 3.08 10.21 30.61 0.31 3.39 16 18 C -0.09 3.13 10.21 30.62 0.31 3.45 16 19 C -0.33 -11.78 9.75 22.52 0.22 -11.56 16 20 C -0.03 -0.97 9.53 22.23 0.21 -0.75 16 21 C 0.50 6.27 7.65 87.66 0.67 6.94 16 22 O -0.59 -14.27 14.76 -3.03 -0.04 -14.32 16 23 C -0.13 -0.19 3.57 29.85 0.11 -0.08 16 24 C -0.35 -1.40 3.75 71.98 0.27 -1.13 16 25 Si 1.02 -0.60 29.30 68.60 2.01 1.41 16 26 H -0.29 -1.31 7.11 99.48 0.71 -0.60 16 27 H -0.26 0.36 7.11 99.48 0.71 1.07 16 28 H -0.25 0.43 7.11 99.48 0.71 1.14 16 29 C -0.11 0.25 9.23 22.23 0.21 0.45 16 30 C -0.07 0.06 9.76 22.54 0.22 0.28 16 31 H 0.15 -0.86 8.06 -2.91 -0.02 -0.89 16 32 H 0.16 -1.71 6.11 -2.91 -0.02 -1.73 16 33 H 0.12 -0.97 6.25 -2.38 -0.01 -0.99 16 34 H 0.10 -0.37 8.09 -2.39 -0.02 -0.39 16 35 H 0.04 0.85 7.44 -2.39 -0.02 0.83 16 36 H 0.09 0.83 6.73 -2.38 -0.02 0.81 16 37 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.23 -9.69 8.14 -2.39 -0.02 -9.71 16 40 H 0.14 -4.72 8.14 -2.39 -0.02 -4.74 16 41 H 0.15 -4.94 8.14 -2.39 -0.02 -4.96 16 42 H 0.15 -4.91 8.14 -2.38 -0.02 -4.93 16 43 H 0.14 -4.61 8.14 -2.39 -0.02 -4.63 16 44 H 0.05 1.97 8.06 -2.91 -0.02 1.94 16 45 H 0.07 2.48 7.35 -2.91 -0.02 2.46 16 46 H 0.12 -0.61 7.30 -2.39 -0.02 -0.63 16 47 H 0.12 -0.59 5.02 -2.39 -0.01 -0.60 16 48 H 0.07 0.50 7.96 -2.39 -0.02 0.48 16 49 H 0.07 0.56 7.88 -2.39 -0.02 0.54 16 50 H 0.14 -0.62 7.30 -2.91 -0.02 -0.64 16 51 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -91.96 461.80 10.63 -81.33 By element: Atomic # 1 Polarization: -25.21 SS G_CDS: 1.71 Total: -23.50 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 8.63 Total: -31.84 kcal Atomic # 7 Polarization: -11.41 SS G_CDS: -1.68 Total: -13.08 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.04 Total: -14.32 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.01 Total: 1.41 kcal Total: -91.96 10.63 -81.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18167044_16729622_13179792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 460.840 kcal (2) G-P(sol) polarization free energy of solvation -91.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 368.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 379.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds