Wall clock time and date at job start Wed Apr 14 2021 12:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21283 * 1 3 3 C 1.50700 * 119.99803 * 2 1 4 Xx 1.80997 * 109.47151 * 359.97438 * 3 2 1 5 4 F 4.17178 * 69.38129 * 0.02562 * 2 1 3 6 5 F 1.60999 * 89.99917 * 315.00002 * 4 3 2 7 6 F 1.61006 * 90.00087 * 134.99751 * 4 3 2 8 7 F 1.61006 * 90.00080 * 45.00098 * 4 3 2 9 8 F 1.60998 * 90.00425 * 224.99882 * 4 3 2 10 9 N 1.34777 * 120.00463 * 179.72122 * 2 1 3 11 10 C 1.46497 * 119.99525 * 0.02562 * 10 2 1 12 11 C 1.52999 * 109.46992 * 179.97438 * 11 10 2 13 12 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 13 C 1.50815 * 109.43797 * 174.79179 * 13 12 11 15 14 C 1.38794 * 117.81136 * 288.58514 * 14 13 12 16 15 C 1.37996 * 120.50547 * 179.52677 * 15 14 13 17 16 C 1.38227 * 119.71716 * 359.91385 * 16 15 14 18 17 C 1.37948 * 119.82798 * 0.26153 * 17 16 15 19 18 C 1.37709 * 122.34281 * 108.50199 * 14 13 12 20 19 C 1.50604 * 122.85439 * 1.47897 * 19 14 13 21 20 C 1.52787 * 110.85049 * 339.80273 * 20 19 14 22 21 N 1.46682 * 109.43670 * 295.00013 * 13 12 11 23 22 C 1.34774 * 121.34506 * 104.29356 * 22 13 12 24 23 O 1.21283 * 120.00025 * 0.06010 * 23 22 13 25 24 C 1.50705 * 120.00187 * 180.02562 * 23 22 13 26 25 C 1.52995 * 109.47336 * 180.02562 * 25 23 22 27 26 Si 1.86303 * 109.47009 * 179.97438 * 26 25 23 28 27 H 1.48499 * 109.46941 * 179.97438 * 27 26 25 29 28 H 1.48501 * 109.47023 * 299.99457 * 27 26 25 30 29 H 1.48500 * 109.47162 * 59.99715 * 27 26 25 31 30 H 1.09009 * 109.47352 * 119.99681 * 3 2 1 32 31 H 1.08998 * 109.47585 * 239.99969 * 3 2 1 33 32 H 0.97000 * 119.99894 * 179.97438 * 10 2 1 34 33 H 1.08995 * 109.47421 * 299.99467 * 11 10 2 35 34 H 1.09001 * 109.47621 * 60.00103 * 11 10 2 36 35 H 1.09009 * 109.47378 * 299.99899 * 12 11 10 37 36 H 1.08993 * 109.47209 * 59.99808 * 12 11 10 38 37 H 1.09004 * 109.44081 * 54.91621 * 13 12 11 39 38 H 1.08004 * 119.74616 * 359.50729 * 15 14 13 40 39 H 1.08000 * 120.14329 * 179.97438 * 16 15 14 41 40 H 1.08000 * 120.08660 * 180.23319 * 17 16 15 42 41 H 1.08000 * 119.71311 * 180.02562 * 18 17 16 43 42 H 1.09003 * 109.19655 * 100.15131 * 20 19 14 44 43 H 1.08994 * 109.20450 * 219.44488 * 20 19 14 45 44 H 1.08997 * 109.77388 * 167.09607 * 21 20 19 46 45 H 1.09000 * 109.76885 * 287.88932 * 21 20 19 47 46 H 1.09004 * 109.46639 * 299.99966 * 25 23 22 48 47 H 1.08996 * 109.47045 * 59.98993 * 25 23 22 49 48 H 1.09003 * 109.46681 * 299.99627 * 26 25 23 50 49 H 1.08999 * 109.47204 * 59.99706 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 6 1.9663 1.3051 0.0000 4 9 -0.2562 3.9046 0.0017 5 9 -0.0747 1.9407 -1.1394 6 9 1.6549 3.4209 1.1379 7 9 -0.0757 1.9413 1.1376 8 9 1.6557 3.4205 -1.1390 9 7 1.8868 -1.1671 0.0057 10 6 1.1543 -2.4358 0.0113 11 6 2.1486 -3.5987 0.0164 12 6 1.3837 -4.9237 0.0216 13 6 2.3594 -6.0670 -0.1024 14 6 2.9840 -6.2552 -1.3275 15 6 3.8940 -7.2782 -1.5000 16 6 4.1865 -8.1205 -0.4437 17 6 3.5635 -7.9366 0.7733 18 6 2.6424 -6.9113 0.9480 19 6 1.9820 -6.7882 2.2960 20 6 1.3950 -5.3908 2.4883 21 7 0.6329 -5.0490 1.2755 22 6 -0.7006 -4.8579 1.3164 23 8 -1.3043 -4.5772 0.3026 24 6 -1.4417 -4.9937 2.6216 25 6 -2.9310 -4.7290 2.3923 26 14 -3.8472 -4.8977 4.0057 27 1 -5.2927 -4.6402 3.7834 28 1 -3.6649 -6.2724 4.5371 29 1 -3.3143 -3.9145 4.9828 30 1 2.5930 1.3630 0.8901 31 1 2.5930 1.3630 -0.8899 32 1 2.8568 -1.1670 0.0053 33 1 0.5274 -2.4895 0.9013 34 1 0.5280 -2.4978 -0.8787 35 1 2.7753 -3.5449 -0.8739 36 1 2.7752 -3.5370 0.9061 37 1 0.6909 -4.9460 -0.8197 38 1 2.7559 -5.5962 -2.1522 39 1 4.3763 -7.4196 -2.4559 40 1 4.9005 -8.9207 -0.5710 41 1 3.7938 -8.5955 1.5975 42 1 1.1835 -7.5262 2.3726 43 1 2.7200 -6.9775 3.0754 44 1 0.7324 -5.3852 3.3538 45 1 2.1994 -4.6699 2.6342 46 1 -1.3082 -6.0027 3.0118 47 1 -1.0500 -4.2722 3.3385 48 1 -3.0648 -3.7201 2.0019 49 1 -3.3222 -5.4509 1.6755 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275592_15865820_15845322_18081600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 14 2021 12:04:39 Heat of formation + Delta-G solvation = 311.773369 kcal Electronic energy + Delta-G solvation = -39173.548607 eV Core-core repulsion = 33270.137439 eV Total energy + Delta-G solvation = -5903.411168 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 398.154 amu Computer time = 22.47 seconds Orbital eigenvalues (eV) -44.29276 -44.13199 -43.93770 -43.85250 -43.24066 -41.90188 -41.18039 -40.04144 -37.65534 -36.67252 -34.77627 -33.68587 -32.61261 -32.11937 -30.52928 -29.46904 -26.87825 -24.95022 -24.60422 -23.48109 -22.71194 -22.21584 -21.40824 -19.42505 -18.86143 -18.42715 -17.92411 -17.54157 -17.33731 -16.97615 -16.68870 -16.05082 -15.91342 -15.67101 -15.57880 -15.35888 -15.28977 -15.02776 -14.80925 -14.74082 -14.57779 -14.55012 -14.50990 -14.17681 -14.09940 -14.04169 -13.94877 -13.81977 -13.68185 -13.64653 -13.60801 -13.41111 -13.38594 -13.20021 -13.04151 -12.97661 -12.73455 -12.47103 -12.41590 -12.36180 -12.25059 -12.02645 -11.78497 -11.71308 -11.68097 -11.65646 -11.59971 -11.51017 -11.09988 -10.68445 -10.58159 -9.83034 -9.62024 -9.51608 -5.05020 -4.58009 -2.84771 0.39134 0.46410 0.81638 1.08647 1.45128 1.60719 1.63326 1.65690 1.90530 2.18088 2.73605 2.85611 3.04647 3.14363 3.38449 3.65615 3.81914 3.89682 3.91904 3.97817 4.06441 4.10069 4.17226 4.20907 4.28475 4.33371 4.41525 4.55725 4.57675 4.62866 4.66567 4.73278 4.77868 4.87779 4.91460 4.95577 5.00592 5.08250 5.10534 5.24790 5.33621 5.43639 5.59935 5.65166 5.70463 5.87918 6.09461 6.38701 6.60554 7.17798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.513 6.513 2 C 0.458 3.542 3 C 0.377 3.623 4 F -0.242 7.242 5 F -0.134 7.134 6 F -0.187 7.187 7 F -0.134 7.134 8 F -0.186 7.186 9 N -0.680 5.680 10 C 0.131 3.869 11 C -0.124 4.124 12 C 0.188 3.812 13 C -0.097 4.097 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.076 4.076 19 C -0.099 4.099 20 C 0.100 3.900 21 N -0.611 5.611 22 C 0.514 3.486 23 O -0.578 6.578 24 C -0.136 4.136 25 C -0.338 4.338 26 Si 1.012 2.988 27 H -0.294 1.294 28 H -0.261 1.261 29 H -0.267 1.267 30 H 0.252 0.748 31 H 0.250 0.750 32 H 0.436 0.564 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.074 0.926 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.637 -11.545 4.594 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.389 6.389 2 C 0.242 3.758 3 C 0.334 3.666 4 F -0.242 7.242 5 F -0.133 7.133 6 F -0.186 7.186 7 F -0.132 7.132 8 F -0.185 7.185 9 N -0.336 5.336 10 C 0.008 3.992 11 C -0.162 4.162 12 C 0.084 3.916 13 C -0.098 4.098 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.076 4.076 19 C -0.136 4.136 20 C -0.022 4.022 21 N -0.344 5.344 22 C 0.304 3.696 23 O -0.457 6.457 24 C -0.175 4.175 25 C -0.430 4.430 26 Si 0.840 3.160 27 H -0.220 1.220 28 H -0.184 1.184 29 H -0.191 1.191 30 H 0.269 0.731 31 H 0.266 0.734 32 H 0.277 0.723 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.117 0.883 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.092 0.908 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.009 -11.563 4.880 18.808 hybrid contribution -0.420 0.465 -0.946 1.135 sum 13.589 -11.097 3.934 17.980 Atomic orbital electron populations 1.91105 1.15246 1.85685 1.46911 1.20805 0.89449 0.86189 0.79346 1.32576 0.61522 0.54449 1.18034 1.99999 1.62761 1.61404 1.99996 1.99921 1.76312 1.39518 1.97519 1.99918 1.39638 1.83615 1.95444 1.99921 1.76493 1.39325 1.97491 1.99918 1.39605 1.83452 1.95505 1.45479 1.12078 1.02468 1.73570 1.21373 0.94873 0.80748 1.02203 1.22131 0.97477 0.90209 1.06422 1.19682 0.91612 0.92386 0.87933 1.19627 0.98618 0.97409 0.94170 1.21243 0.96853 0.98755 0.96799 1.21331 0.98426 0.95533 0.99704 1.21402 0.99990 0.99647 0.93460 1.21444 0.96978 0.98083 0.98269 1.19722 0.96760 0.95144 0.95975 1.20915 1.00819 0.98072 0.93833 1.22096 0.97227 0.96009 0.86828 1.48286 1.06445 1.69669 1.09950 1.21249 0.81556 0.75118 0.91647 1.90727 1.67877 1.49294 1.37849 1.21590 0.94451 1.06535 0.94905 1.25074 1.00062 1.05682 1.12204 0.84402 0.77062 0.79622 0.74916 1.21975 1.18449 1.19125 0.73136 0.73381 0.72319 0.92245 0.92728 0.87363 0.87653 0.89929 0.84860 0.84847 0.85008 0.84697 0.90278 0.87256 0.86555 0.88322 0.85912 0.85953 0.90751 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 266. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -3.72 12.46 -3.04 -0.04 -3.76 16 2 C 0.46 -3.98 7.15 87.66 0.63 -3.35 16 3 C 0.38 -6.02 5.47 71.24 0.39 -5.63 16 4 F -0.24 -6.21 16.66 44.97 0.75 -5.46 16 5 F -0.13 -2.01 13.72 44.97 0.62 -1.40 16 6 F -0.19 -1.60 15.87 44.97 0.71 -0.88 16 7 F -0.13 -1.91 13.70 44.97 0.62 -1.30 16 8 F -0.19 -1.66 15.88 44.97 0.71 -0.94 16 9 N -0.68 11.18 5.56 -463.07 -2.57 8.61 16 10 C 0.13 -1.10 5.44 86.38 0.47 -0.63 16 11 C -0.12 1.67 4.84 30.59 0.15 1.81 16 12 C 0.19 -1.17 2.20 44.25 0.10 -1.07 16 13 C -0.10 0.55 5.16 -19.82 -0.10 0.45 16 14 C -0.12 0.64 9.19 22.35 0.21 0.84 16 15 C -0.13 0.62 10.05 22.21 0.22 0.85 16 16 C -0.13 0.59 10.04 22.20 0.22 0.81 16 17 C -0.13 0.73 9.59 22.37 0.21 0.94 16 18 C -0.08 0.49 5.76 -19.85 -0.11 0.37 16 19 C -0.10 1.14 5.86 29.75 0.17 1.31 16 20 C 0.10 -1.33 6.22 86.16 0.54 -0.80 16 21 N -0.61 3.92 2.19 -799.85 -1.75 2.17 16 22 C 0.51 -0.10 6.86 87.66 0.60 0.51 16 23 O -0.58 -5.67 15.51 -3.04 -0.05 -5.71 16 24 C -0.14 0.78 3.44 29.85 0.10 0.89 16 25 C -0.34 0.31 3.74 71.98 0.27 0.58 16 26 Si 1.01 -1.72 29.30 68.60 2.01 0.29 16 27 H -0.29 -1.19 7.11 99.48 0.71 -0.49 16 28 H -0.26 0.49 7.11 99.48 0.71 1.20 16 29 H -0.27 0.20 7.11 99.48 0.71 0.91 16 30 H 0.25 -7.35 7.65 -2.38 -0.02 -7.37 16 31 H 0.25 -7.14 7.65 -2.39 -0.02 -7.16 16 32 H 0.44 -12.07 8.47 -92.71 -0.79 -12.86 16 33 H 0.06 -0.20 7.12 -2.39 -0.02 -0.22 16 34 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.11 -1.81 7.79 -2.38 -0.02 -1.83 16 36 H 0.11 -1.87 7.21 -2.39 -0.02 -1.88 16 37 H 0.08 0.01 7.17 -2.38 -0.02 -0.01 16 38 H 0.13 -1.10 8.05 -2.91 -0.02 -1.13 16 39 H 0.13 -0.98 8.06 -2.91 -0.02 -1.00 16 40 H 0.13 -0.94 8.06 -2.91 -0.02 -0.96 16 41 H 0.14 -1.18 8.05 -2.91 -0.02 -1.20 16 42 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.11 -1.65 8.11 -2.39 -0.02 -1.67 16 44 H 0.12 -2.00 6.05 -2.39 -0.01 -2.01 16 45 H 0.10 -1.67 7.25 -2.39 -0.02 -1.69 16 46 H 0.12 -1.35 7.75 -2.38 -0.02 -1.37 16 47 H 0.12 -1.35 7.60 -2.39 -0.02 -1.37 16 48 H 0.07 0.20 7.92 -2.39 -0.02 0.18 16 49 H 0.08 0.10 7.92 -2.39 -0.02 0.08 16 Total: 0.00 -59.30 417.36 6.05 -53.25 By element: Atomic # 1 Polarization: -43.73 SS G_CDS: 0.97 Total: -42.76 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.06 Total: -2.12 kcal Atomic # 7 Polarization: 15.11 SS G_CDS: -4.32 Total: 10.79 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.09 Total: -9.47 kcal Atomic # 9 Polarization: -13.39 SS G_CDS: 3.41 Total: -9.98 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.01 Total: 0.29 kcal Total: -59.30 6.05 -53.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275592_15865820_15845322_18081600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 365.028 kcal (2) G-P(sol) polarization free energy of solvation -59.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 305.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 311.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.47 seconds