Wall clock time and date at job start Wed Apr 14 2021 12:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21305 * 1 3 3 C 1.50700 * 119.99961 * 2 1 4 4 C 1.53006 * 109.47095 * 359.67112 * 3 2 1 5 5 Si 1.86295 * 109.47116 * 179.97438 * 4 3 2 6 6 H 1.48496 * 109.47020 * 180.02562 * 5 4 3 7 7 H 1.48501 * 109.46840 * 299.99693 * 5 4 3 8 8 H 1.48499 * 109.47450 * 59.99369 * 5 4 3 9 9 N 1.34775 * 119.99709 * 179.72886 * 2 1 3 10 10 C 1.46502 * 119.99331 * 184.87561 * 9 2 1 11 11 C 1.50707 * 109.47074 * 267.11423 * 10 9 2 12 12 C 1.38211 * 119.99776 * 276.39180 * 11 10 9 13 13 C 1.38264 * 119.99358 * 180.02562 * 12 11 10 14 Xx 1.80996 * 119.99726 * 179.97438 * 13 12 11 15 14 F 8.19423 * 117.86084 * 222.18810 * 2 1 3 16 15 F 1.60998 * 90.00183 * 134.99696 * 14 13 12 17 16 F 1.61002 * 89.99961 * 314.99405 * 14 13 12 18 17 F 1.61000 * 90.00012 * 224.99875 * 14 13 12 19 18 F 1.60997 * 90.00405 * 44.99611 * 14 13 12 20 19 C 1.38217 * 120.00201 * 359.94808 * 13 12 11 21 20 C 1.38256 * 119.99932 * 0.03074 * 20 13 12 22 21 C 1.38213 * 120.00100 * 359.76352 * 21 20 13 23 22 C 1.40759 * 120.00597 * 4.87390 * 9 2 1 24 23 C 1.35758 * 126.07658 * 0.28243 * 23 9 2 25 24 N 1.35817 * 107.56176 * 179.97438 * 24 23 9 26 25 C 1.46496 * 126.05119 * 180.02562 * 25 24 23 27 26 C 1.53002 * 109.47201 * 125.00438 * 26 25 24 28 27 O 1.42899 * 109.47021 * 179.97438 * 27 26 25 29 28 N 1.40064 * 107.89157 * 0.02562 * 25 24 23 30 29 C 1.30834 * 108.37290 * 359.71470 * 29 25 24 31 30 H 1.09003 * 109.46574 * 119.66149 * 3 2 1 32 31 H 1.08988 * 109.47331 * 239.66762 * 3 2 1 33 32 H 1.09000 * 109.46819 * 299.99942 * 4 3 2 34 33 H 1.09004 * 109.47169 * 59.99335 * 4 3 2 35 34 H 1.08992 * 109.47862 * 27.11488 * 10 9 2 36 35 H 1.09007 * 109.47065 * 147.12240 * 10 9 2 37 36 H 1.08000 * 120.00380 * 359.97438 * 12 11 10 38 37 H 1.07997 * 119.99490 * 180.02562 * 20 13 12 39 38 H 1.08000 * 119.99872 * 179.97438 * 21 20 13 40 39 H 1.07998 * 119.99937 * 180.02562 * 22 21 20 41 40 H 1.08003 * 126.21777 * 359.97438 * 24 23 9 42 41 H 1.09001 * 109.46737 * 245.00088 * 26 25 24 43 42 H 1.08996 * 109.47221 * 4.99622 * 26 25 24 44 43 H 1.09001 * 109.46990 * 299.99496 * 27 26 25 45 44 H 1.08998 * 109.47218 * 59.99685 * 27 26 25 46 45 H 0.96702 * 113.99893 * 180.02562 * 28 27 26 47 46 H 1.07999 * 125.83266 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2131 0.0000 0.0000 3 6 1.9665 1.3051 0.0000 4 6 0.9723 2.4680 -0.0083 5 14 1.9037 4.0814 -0.0075 6 1 0.9387 5.2101 -0.0149 7 1 2.7509 4.1632 1.2094 8 1 2.7640 4.1570 -1.2155 9 7 1.8869 -1.1672 0.0055 10 6 3.3479 -1.1689 0.1134 11 6 3.9535 -1.1874 -1.2666 12 6 4.1066 -2.3857 -1.9380 13 6 4.6627 -2.4025 -3.2038 14 9 5.0424 -5.3677 -4.8651 15 9 4.2839 -3.2952 -5.4237 16 9 5.4441 -4.6485 -2.7421 17 9 6.3551 -3.5410 -4.5106 18 9 3.3728 -4.4028 -3.6552 19 6 5.0644 -1.2210 -3.7980 20 6 4.9107 -0.0224 -3.1265 21 6 4.3509 -0.0050 -1.8629 22 6 1.1870 -2.3845 -0.0923 23 6 -0.1587 -2.5264 -0.2024 24 7 -0.4264 -3.8561 -0.2710 25 6 -1.7537 -4.4630 -0.3970 26 6 -1.7794 -5.3847 -1.6179 27 8 -3.0740 -5.9771 -1.7404 28 7 0.7914 -4.5444 -0.2000 29 6 1.7561 -3.6664 -0.0991 30 1 2.5886 1.3654 0.8931 31 1 2.5976 1.3603 -0.8869 32 1 0.3501 2.4077 -0.9012 33 1 0.3411 2.4128 0.8787 34 1 3.6744 -0.2731 0.6414 35 1 3.6706 -2.0529 0.6635 36 1 3.7928 -3.3089 -1.4737 37 1 5.4983 -1.2343 -4.7869 38 1 5.2249 0.9008 -3.5906 39 1 4.2305 0.9315 -1.3385 40 1 -0.8845 -1.7270 -0.2304 41 1 -1.9752 -5.0417 0.4998 42 1 -2.5016 -3.6793 -0.5175 43 1 -1.5579 -4.8061 -2.5147 44 1 -1.0315 -6.1684 -1.4973 45 1 -3.1629 -6.5755 -2.4948 46 1 2.8100 -3.8906 -0.0256 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18159712_18164856_13179792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 14 2021 12:37:13 Heat of formation + Delta-G solvation = 412.735740 kcal Electronic energy + Delta-G solvation = -39347.765694 eV Core-core repulsion = 33410.618151 eV Total energy + Delta-G solvation = -5937.147543 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 397.134 amu Computer time = 57.02 seconds Orbital eigenvalues (eV) -44.64017 -44.35270 -43.96221 -43.75180 -43.55328 -42.67561 -41.35642 -40.47124 -38.18279 -37.09766 -34.55988 -33.70878 -33.25163 -32.37745 -30.88484 -29.29466 -27.68856 -25.47083 -24.61340 -23.93639 -23.03728 -22.42960 -21.49911 -20.17360 -19.11214 -18.51498 -18.08404 -17.75528 -17.13732 -16.98602 -16.90766 -16.54013 -15.98604 -15.87158 -15.50408 -15.42017 -15.34838 -15.25340 -15.14281 -14.94971 -14.86346 -14.73303 -14.69098 -14.42874 -14.29718 -14.21976 -14.08369 -14.00618 -13.93785 -13.65804 -13.49024 -13.39203 -13.32289 -13.31976 -13.19756 -12.97559 -12.75851 -12.69504 -12.55463 -12.19562 -12.11390 -11.99603 -11.84010 -11.47176 -11.43524 -11.36278 -11.16811 -11.14563 -10.81279 -10.75235 -10.58158 -10.57708 -8.77213 -5.31328 -4.86665 -2.98469 -0.69589 -0.51828 0.72349 1.15927 1.28908 1.61077 1.74405 1.80108 1.84673 1.99127 2.12563 2.36108 2.68038 2.94853 3.03346 3.36772 3.43005 3.51366 3.59692 3.64908 3.77416 3.91426 3.91620 3.95127 4.08308 4.12906 4.16769 4.29284 4.34232 4.38334 4.50668 4.51518 4.56821 4.60756 4.70271 4.73483 4.77776 4.90689 5.00892 5.08742 5.13964 5.53074 5.64690 5.94197 6.23279 6.54660 6.61376 7.11306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C 0.508 3.492 3 C -0.137 4.137 4 C -0.340 4.340 5 Si 1.005 2.995 6 H -0.306 1.306 7 H -0.261 1.261 8 H -0.246 1.246 9 N -0.524 5.524 10 C 0.134 3.866 11 C -0.049 4.049 12 C -0.115 4.115 13 C 0.343 3.657 14 F -0.082 7.082 15 F -0.220 7.220 16 F -0.117 7.117 17 F -0.202 7.202 18 F -0.260 7.260 19 C -0.117 4.117 20 C -0.033 4.033 21 C -0.073 4.073 22 C -0.010 4.010 23 C 0.038 3.962 24 N -0.375 5.375 25 C 0.138 3.862 26 C 0.074 3.926 27 O -0.582 6.582 28 N -0.310 5.310 29 C 0.034 3.966 30 H 0.146 0.854 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.176 0.824 35 H 0.123 0.877 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.227 0.773 39 H 0.222 0.778 40 H 0.197 0.803 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.406 0.594 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 14.591 6.531 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.437 6.437 2 C 0.300 3.700 3 C -0.176 4.176 4 C -0.432 4.432 5 Si 0.833 3.167 6 H -0.233 1.233 7 H -0.185 1.185 8 H -0.169 1.169 9 N -0.249 5.249 10 C 0.013 3.987 11 C -0.051 4.051 12 C -0.133 4.133 13 C 0.339 3.661 14 F -0.081 7.081 15 F -0.219 7.219 16 F -0.117 7.117 17 F -0.201 7.201 18 F -0.258 7.258 19 C -0.135 4.135 20 C -0.050 4.050 21 C -0.090 4.090 22 C -0.113 4.113 23 C -0.108 4.108 24 N -0.162 5.162 25 C 0.016 3.984 26 C -0.005 4.005 27 O -0.391 6.391 28 N -0.132 5.132 29 C -0.154 4.154 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.193 0.807 35 H 0.141 0.859 36 H 0.182 0.818 37 H 0.195 0.805 38 H 0.244 0.756 39 H 0.238 0.762 40 H 0.214 0.786 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.257 0.743 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.513 14.504 7.022 16.493 hybrid contribution -0.227 -2.194 -1.617 2.735 sum 3.287 12.310 5.405 13.841 Atomic orbital electron populations 1.90597 1.16349 1.86934 1.49861 1.21781 0.88024 0.85719 0.74494 1.21902 0.99470 0.87993 1.08186 1.25094 1.04637 1.06994 1.06441 0.84497 0.77627 0.74024 0.80569 1.23340 1.18486 1.16944 1.45278 1.06947 1.02295 1.70371 1.21326 0.76199 1.10710 0.90418 1.20736 0.98742 0.87579 0.98027 1.21979 0.98852 1.02441 0.90012 1.27538 1.09540 0.46715 0.82345 1.99964 1.85835 1.22597 1.99737 1.99914 1.89440 1.37507 1.95041 1.99949 1.32394 1.90077 1.89234 1.99934 1.92718 1.73037 1.54405 1.99929 1.40585 1.87771 1.97524 1.22381 1.00829 0.85220 1.05052 1.22173 0.95544 0.93616 0.93646 1.22528 0.92037 0.99892 0.94535 1.17776 0.90632 0.86986 1.15902 1.23225 0.97759 0.86364 1.03489 1.48501 1.05867 1.04394 1.57419 1.21491 0.78655 0.98659 0.99553 1.22136 0.85344 0.96090 0.96948 1.86309 1.31377 1.66031 1.55333 1.77289 0.89981 1.22207 1.23685 1.23986 0.99994 0.88989 1.02424 0.83635 0.85037 0.90118 0.90143 0.80683 0.85923 0.81827 0.80459 0.75649 0.76152 0.78602 0.88687 0.86232 0.93499 0.93146 0.74285 0.78071 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 751. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.14 13.16 -3.11 -0.04 -1.19 16 2 C 0.51 -3.88 7.63 87.66 0.67 -3.22 16 3 C -0.14 2.43 3.68 29.85 0.11 2.54 16 4 C -0.34 4.12 3.74 71.98 0.27 4.39 16 5 Si 1.00 -12.30 29.30 68.60 2.01 -10.29 16 6 H -0.31 1.18 7.11 99.48 0.71 1.89 16 7 H -0.26 3.06 7.11 99.48 0.71 3.77 16 8 H -0.25 3.51 7.11 99.48 0.71 4.22 16 9 N -0.52 4.76 2.70 -635.96 -1.72 3.04 16 10 C 0.13 -2.56 5.06 85.63 0.43 -2.13 16 11 C -0.05 0.84 5.46 -19.86 -0.11 0.73 16 12 C -0.11 0.80 8.07 22.27 0.18 0.98 16 13 C 0.34 -0.29 4.82 22.27 0.11 -0.18 16 14 F -0.08 -1.94 16.66 44.97 0.75 -1.19 16 15 F -0.22 -3.94 15.31 44.97 0.69 -3.25 16 16 F -0.12 -1.64 15.31 44.97 0.69 -0.95 16 17 F -0.20 -3.01 15.31 44.97 0.69 -2.32 16 18 F -0.26 -5.00 15.31 44.97 0.69 -4.31 16 19 C -0.12 1.12 8.62 22.27 0.19 1.31 16 20 C -0.03 0.70 10.05 22.27 0.22 0.93 16 21 C -0.07 1.73 8.77 22.27 0.20 1.92 16 22 C -0.01 0.00 6.64 37.62 0.25 0.25 16 23 C 0.04 0.16 10.34 83.50 0.86 1.02 16 24 N -0.37 -2.22 3.70 -346.99 -1.29 -3.51 16 25 C 0.14 0.42 6.89 86.38 0.59 1.02 16 26 C 0.07 0.30 7.23 71.98 0.52 0.82 16 27 O -0.58 -1.83 13.66 -148.98 -2.03 -3.86 16 28 N -0.31 -2.54 12.41 -56.77 -0.70 -3.24 16 29 C 0.03 0.05 10.08 85.33 0.86 0.91 16 30 H 0.15 -3.72 7.08 -2.39 -0.02 -3.74 16 31 H 0.13 -3.33 4.88 -2.39 -0.01 -3.34 16 32 H 0.08 -0.75 7.92 -2.39 -0.02 -0.77 16 33 H 0.08 -0.72 7.92 -2.38 -0.02 -0.73 16 34 H 0.18 -5.13 6.26 -2.39 -0.01 -5.15 16 35 H 0.12 -2.48 7.04 -2.38 -0.02 -2.49 16 36 H 0.16 -0.66 4.78 -2.91 -0.01 -0.68 16 37 H 0.18 -1.47 7.40 -2.91 -0.02 -1.49 16 38 H 0.23 -6.69 8.06 -2.91 -0.02 -6.72 16 39 H 0.22 -7.46 6.16 -2.91 -0.02 -7.48 16 40 H 0.20 0.90 5.87 -2.91 -0.02 0.88 16 41 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.12 -0.02 8.07 -2.39 -0.02 -0.04 16 43 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.41 -1.93 9.12 -74.06 -0.68 -2.60 16 46 H 0.20 -0.97 5.82 -2.91 -0.02 -0.98 16 Total: 0.00 -50.73 402.04 6.25 -44.49 By element: Atomic # 1 Polarization: -25.88 SS G_CDS: 1.16 Total: -24.72 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 5.36 Total: 11.29 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -3.71 Total: -3.71 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -2.08 Total: -5.05 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 3.50 Total: -12.02 kcal Atomic # 14 Polarization: -12.30 SS G_CDS: 2.01 Total: -10.29 kcal Total: -50.73 6.25 -44.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18159712_18164856_13179792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 457.221 kcal (2) G-P(sol) polarization free energy of solvation -50.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 406.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 412.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 57.02 seconds