Wall clock time and date at job start Wed Apr 14 2021 13:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21285 * 1 3 3 C 1.50705 * 120.00092 * 2 1 4 4 C 1.53004 * 109.46905 * 354.89275 * 3 2 1 5 5 Si 1.86300 * 109.46864 * 179.97438 * 4 3 2 6 6 H 1.48496 * 109.47419 * 299.99997 * 5 4 3 7 7 H 1.48505 * 109.47157 * 60.00044 * 5 4 3 8 8 H 1.48497 * 109.46869 * 179.97438 * 5 4 3 9 9 N 1.34773 * 120.00151 * 179.72250 * 2 1 3 10 10 C 1.46501 * 120.00112 * 185.30277 * 9 2 1 11 11 C 1.50709 * 109.46982 * 95.27851 * 10 9 2 12 12 C 1.38207 * 120.00008 * 265.01368 * 11 10 9 13 13 C 1.38253 * 120.00133 * 180.02562 * 12 11 10 14 Xx 1.80997 * 119.99980 * 179.97438 * 13 12 11 15 14 F 7.18642 * 121.99419 * 67.97353 * 2 1 3 16 15 F 1.60999 * 90.00285 * 135.00048 * 14 13 12 17 16 F 1.61002 * 90.00253 * 314.99766 * 14 13 12 18 17 F 1.61004 * 90.00253 * 224.99840 * 14 13 12 19 18 F 1.60996 * 90.00285 * 44.99737 * 14 13 12 20 19 C 1.38215 * 119.99690 * 359.95121 * 13 12 11 21 20 C 1.38251 * 120.00428 * 0.02594 * 20 13 12 22 21 C 1.38220 * 119.99671 * 359.76710 * 21 20 13 23 22 C 1.46505 * 119.99696 * 5.30553 * 9 2 1 24 23 C 1.52994 * 109.47005 * 90.00158 * 23 9 2 25 24 C 1.53871 * 109.64821 * 65.72355 * 24 23 9 26 25 C 1.55048 * 106.62419 * 167.03184 * 25 24 23 27 26 S 1.83291 * 102.56770 * 317.56603 * 26 25 24 28 27 O 1.42103 * 109.35560 * 136.61136 * 27 26 25 29 28 O 1.42099 * 109.35296 * 269.67947 * 27 26 25 30 29 C 1.54174 * 109.64285 * 184.99898 * 24 23 9 31 30 H 1.09001 * 109.46824 * 114.89104 * 3 2 1 32 31 H 1.08993 * 109.46896 * 234.89017 * 3 2 1 33 32 H 1.09002 * 109.46829 * 299.99917 * 4 3 2 34 33 H 1.08994 * 109.47142 * 59.99803 * 4 3 2 35 34 H 1.08998 * 109.46868 * 215.27401 * 10 9 2 36 35 H 1.08994 * 109.47306 * 335.27804 * 10 9 2 37 36 H 1.08003 * 119.99493 * 359.97438 * 12 11 10 38 37 H 1.08001 * 119.99651 * 179.97438 * 20 13 12 39 38 H 1.08000 * 120.00225 * 179.97438 * 21 20 13 40 39 H 1.08002 * 119.99780 * 179.97438 * 22 21 20 41 40 H 1.08997 * 109.46740 * 210.00062 * 23 9 2 42 41 H 1.08996 * 109.47021 * 329.99611 * 23 9 2 43 42 H 1.09000 * 109.64024 * 305.42419 * 24 23 9 44 43 H 1.08995 * 110.02845 * 286.32040 * 25 24 23 45 44 H 1.09000 * 110.02837 * 47.74198 * 25 24 23 46 45 H 1.09002 * 110.79410 * 75.83334 * 26 25 24 47 46 H 1.09000 * 110.79342 * 199.29979 * 26 25 24 48 47 H 1.09002 * 110.31798 * 331.13826 * 30 24 23 49 48 H 1.09001 * 110.31827 * 93.33354 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2129 0.0000 0.0000 3 6 1.9664 1.3051 0.0000 4 6 0.9771 2.4652 -0.1284 5 14 1.9085 4.0786 -0.1276 6 1 2.6660 4.2123 1.1426 7 1 2.8538 4.1051 -1.2727 8 1 0.9484 5.2045 -0.2529 9 7 1.8867 -1.1671 0.0057 10 6 3.3471 -1.1693 0.1229 11 6 3.7348 -1.3592 1.5668 12 6 4.0021 -0.2600 2.3609 13 6 4.3583 -0.4342 3.6853 14 9 5.0205 2.2858 5.6500 15 9 3.8237 0.3665 5.9083 16 9 5.5945 1.6441 3.5418 17 9 6.0170 0.2674 5.3054 18 9 3.4011 1.7432 4.1447 19 6 4.4460 -1.7076 4.2156 20 6 4.1782 -2.8071 3.4214 21 6 3.8179 -2.6327 2.0985 22 6 1.1589 -2.4337 -0.1055 23 6 1.0211 -2.8149 -1.5808 24 6 2.4110 -3.1116 -2.1706 25 6 2.1743 -3.8010 -3.5390 26 16 0.8088 -4.9660 -3.1678 27 8 -0.1470 -4.9215 -4.2184 28 8 1.3523 -6.2133 -2.7578 29 6 0.1489 -4.0796 -1.7101 30 1 2.5226 1.4035 0.9322 31 1 2.6599 1.3242 -0.8406 32 1 0.4208 2.3668 -1.0606 33 1 0.2836 2.4460 0.7122 34 1 3.7582 -1.9835 -0.4738 35 1 3.7419 -0.2194 -0.2374 36 1 3.9335 0.7350 1.9464 37 1 4.7247 -1.8437 5.2501 38 1 4.2472 -3.8021 3.8357 39 1 3.6091 -3.4917 1.4780 40 1 1.7064 -3.2148 0.4219 41 1 0.1682 -2.3234 0.3354 42 1 0.5598 -1.9939 -2.1298 43 1 2.9629 -2.1823 -2.3113 44 1 2.9634 -3.7776 -1.5077 45 1 1.8685 -3.0736 -4.2910 46 1 3.0657 -4.3397 -3.8602 47 1 0.2431 -4.6973 -0.8169 48 1 -0.8933 -3.8056 -1.8735 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_16730216_18164856_13179792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 14 2021 13:10:33 Heat of formation + Delta-G solvation = 291.877091 kcal Electronic energy + Delta-G solvation = -40560.698901 eV Core-core repulsion = 34492.320932 eV Total energy + Delta-G solvation = -6068.377970 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 419.115 amu Computer time = 22.05 seconds Orbital eigenvalues (eV) -44.35632 -44.24601 -44.13134 -44.07175 -43.55334 -41.71699 -40.57786 -38.36182 -37.98343 -36.97173 -36.27220 -33.77535 -33.12107 -32.35633 -31.27758 -28.49889 -27.52271 -25.45758 -24.09177 -23.93005 -22.88374 -21.60816 -20.02404 -19.70221 -18.43625 -18.14376 -17.92523 -17.46266 -17.12425 -16.93214 -16.59920 -16.53084 -16.07640 -15.75652 -15.37473 -15.28039 -15.19184 -15.13098 -14.99198 -14.87253 -14.80520 -14.73993 -14.42365 -14.34365 -14.27382 -14.14260 -14.12206 -13.87138 -13.80559 -13.68278 -13.61764 -13.58849 -13.45346 -13.32075 -13.19610 -13.09198 -13.03441 -12.95206 -12.72893 -12.62382 -12.38389 -12.27874 -12.24340 -12.04705 -11.87536 -11.78729 -11.68757 -11.56101 -11.47747 -11.44683 -11.13347 -10.75721 -10.70945 -10.57236 -9.83509 -5.24109 -4.79379 -3.03603 -0.80456 -0.65122 -0.46858 1.44346 1.54813 1.59458 1.61459 1.69955 1.83203 2.06324 2.27155 2.72241 2.80834 2.98476 3.12017 3.43311 3.49574 3.52007 3.61758 3.68485 3.76645 3.77299 3.88030 3.99920 4.02007 4.11330 4.18259 4.25437 4.35567 4.39892 4.52744 4.58422 4.62020 4.71821 4.78191 4.81469 4.87944 4.91230 4.93571 4.95120 5.00494 5.15424 5.18118 5.22761 5.34887 5.54454 6.25599 7.17362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C 0.518 3.482 3 C -0.150 4.150 4 C -0.325 4.325 5 Si 0.982 3.018 6 H -0.286 1.286 7 H -0.249 1.249 8 H -0.289 1.289 9 N -0.605 5.605 10 C 0.127 3.873 11 C -0.047 4.047 12 C -0.121 4.121 13 C 0.320 3.680 14 F -0.217 7.217 15 F -0.166 7.166 16 F -0.160 7.160 17 F -0.161 7.161 18 F -0.167 7.167 19 C -0.120 4.120 20 C -0.036 4.036 21 C -0.067 4.067 22 C 0.115 3.885 23 C -0.100 4.100 24 C -0.127 4.127 25 C -0.563 4.563 26 S 2.366 3.634 27 O -1.004 7.004 28 O -0.980 6.980 29 C -0.570 4.570 30 H 0.101 0.899 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.128 0.872 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.220 0.780 39 H 0.220 0.780 40 H 0.131 0.869 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.157 0.843 47 H 0.165 0.835 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 -10.133 -6.578 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.444 6.444 2 C 0.308 3.692 3 C -0.189 4.189 4 C -0.419 4.419 5 Si 0.813 3.187 6 H -0.212 1.212 7 H -0.173 1.173 8 H -0.215 1.215 9 N -0.337 5.337 10 C 0.005 3.995 11 C -0.049 4.049 12 C -0.139 4.139 13 C 0.316 3.684 14 F -0.217 7.217 15 F -0.165 7.165 16 F -0.158 7.158 17 F -0.159 7.159 18 F -0.166 7.166 19 C -0.137 4.137 20 C -0.053 4.053 21 C -0.084 4.084 22 C -0.008 4.008 23 C -0.121 4.121 24 C -0.165 4.165 25 C -0.696 4.696 26 S 2.557 3.443 27 O -1.001 7.001 28 O -0.977 6.977 29 C -0.703 4.703 30 H 0.119 0.881 31 H 0.158 0.842 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.182 0.818 35 H 0.145 0.855 36 H 0.195 0.805 37 H 0.196 0.804 38 H 0.237 0.763 39 H 0.237 0.763 40 H 0.149 0.851 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.162 0.838 46 H 0.175 0.825 47 H 0.183 0.817 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.226 -10.250 -7.114 13.174 hybrid contribution -0.263 2.217 1.660 2.783 sum 3.963 -8.033 -5.454 10.487 Atomic orbital electron populations 1.90752 1.16072 1.87712 1.49833 1.21060 0.87632 0.86257 0.74272 1.21771 0.99702 0.90993 1.06462 1.24861 1.04200 1.06125 1.06687 0.84803 0.78204 0.76306 0.79428 1.21199 1.17252 1.21520 1.48015 1.07086 1.05775 1.72825 1.21379 0.79400 1.10058 0.88661 1.20852 0.98298 0.88838 0.96868 1.22135 0.99883 1.04617 0.87219 1.27915 1.09947 0.54323 0.76223 2.00000 1.27334 1.99851 1.94520 1.99921 1.34036 1.91876 1.90672 1.99919 1.46781 1.97378 1.71769 1.99920 1.33403 1.87148 1.95466 1.99921 1.19643 1.97839 1.99187 1.22404 1.00673 0.84368 1.06286 1.22143 0.94693 0.96239 0.92236 1.22445 0.92083 0.98295 0.95611 1.21758 0.99260 0.85446 0.94326 1.22017 0.95060 0.95662 0.99355 1.22733 0.96637 1.05114 0.92006 1.30448 1.16973 1.14904 1.07318 1.09411 0.78733 0.78083 0.78082 1.93561 1.62257 1.88449 1.55855 1.93580 1.79394 1.41425 1.83276 1.30384 1.10654 1.09722 1.19523 0.88119 0.84241 0.88718 0.90536 0.81802 0.85450 0.80530 0.80390 0.76315 0.76337 0.85067 0.90737 0.89550 0.85327 0.85330 0.83825 0.82534 0.81722 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 262. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.10 15.54 -3.05 -0.05 -1.14 16 2 C 0.52 -4.48 7.66 87.66 0.67 -3.81 16 3 C -0.15 1.62 3.55 29.85 0.11 1.73 16 4 C -0.33 1.52 3.75 71.98 0.27 1.80 16 5 Si 0.98 -1.54 29.30 68.60 2.01 0.47 16 6 H -0.29 -1.09 7.11 99.48 0.71 -0.38 16 7 H -0.25 0.78 7.11 99.48 0.71 1.48 16 8 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 9 N -0.61 11.01 2.35 -826.15 -1.95 9.07 16 10 C 0.13 -3.25 4.93 85.64 0.42 -2.83 16 11 C -0.05 1.03 5.46 -19.86 -0.11 0.92 16 12 C -0.12 1.46 8.00 22.27 0.18 1.64 16 13 C 0.32 -1.46 4.82 22.27 0.11 -1.35 16 14 F -0.22 -5.52 16.66 44.97 0.75 -4.77 16 15 F -0.17 -2.42 15.31 44.97 0.69 -1.73 16 16 F -0.16 -2.05 15.31 44.97 0.69 -1.36 16 17 F -0.16 -2.16 15.31 44.97 0.69 -1.47 16 18 F -0.17 -2.40 15.31 44.97 0.69 -1.71 16 19 C -0.12 1.49 8.62 22.27 0.19 1.68 16 20 C -0.04 0.86 10.05 22.27 0.22 1.08 16 21 C -0.07 1.82 9.30 22.27 0.21 2.03 16 22 C 0.11 -2.20 4.81 86.38 0.42 -1.78 16 23 C -0.10 1.81 2.81 -10.10 -0.03 1.78 16 24 C -0.13 2.99 4.29 31.59 0.14 3.12 16 25 C -0.56 9.69 7.31 72.68 0.53 10.22 16 26 S 2.37 -17.74 6.10 -56.49 -0.34 -18.09 16 27 O -1.00 -4.95 18.15 -127.47 -2.31 -7.26 16 28 O -0.98 -0.03 18.15 -127.47 -2.31 -2.34 16 29 C -0.57 8.43 6.75 72.38 0.49 8.91 16 30 H 0.10 -1.21 5.76 -2.39 -0.01 -1.22 16 31 H 0.14 -2.62 7.18 -2.39 -0.02 -2.63 16 32 H 0.09 -0.47 7.96 -2.39 -0.02 -0.49 16 33 H 0.08 -0.07 7.86 -2.39 -0.02 -0.09 16 34 H 0.16 -5.61 5.84 -2.39 -0.01 -5.62 16 35 H 0.13 -3.53 6.05 -2.39 -0.01 -3.55 16 36 H 0.18 -2.01 5.53 -2.91 -0.02 -2.02 16 37 H 0.18 -1.94 7.40 -2.91 -0.02 -1.96 16 38 H 0.22 -6.75 8.06 -2.91 -0.02 -6.77 16 39 H 0.22 -8.07 7.40 -2.91 -0.02 -8.09 16 40 H 0.13 -3.73 6.93 -2.39 -0.02 -3.75 16 41 H 0.07 -0.91 7.36 -2.39 -0.02 -0.93 16 42 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 43 H 0.13 -3.56 7.04 -2.39 -0.02 -3.57 16 44 H 0.13 -3.92 7.89 -2.39 -0.02 -3.94 16 45 H 0.14 -2.48 8.14 -2.39 -0.02 -2.50 16 46 H 0.16 -3.06 8.14 -2.39 -0.02 -3.08 16 47 H 0.16 -3.22 7.89 -2.39 -0.02 -3.24 16 48 H 0.14 -1.69 8.14 -2.39 -0.02 -1.71 16 Total: 0.00 -65.04 419.63 4.14 -60.91 By element: Atomic # 1 Polarization: -57.50 SS G_CDS: 1.77 Total: -55.73 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 3.81 Total: 25.16 kcal Atomic # 7 Polarization: 11.01 SS G_CDS: -1.95 Total: 9.07 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -4.67 Total: -10.75 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 3.50 Total: -11.04 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.01 Total: 0.47 kcal Atomic # 16 Polarization: -17.74 SS G_CDS: -0.34 Total: -18.09 kcal Total: -65.04 4.14 -60.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_16730216_18164856_13179792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 352.784 kcal (2) G-P(sol) polarization free energy of solvation -65.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 287.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 291.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.05 seconds