Wall clock time and date at job start Thu Apr 15 2021 08:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46500 * 109.46998 * 120.00051 * 2 1 3 5 5 C 1.34945 * 126.03598 * 275.28613 * 4 2 1 6 6 C 1.35319 * 107.74802 * 179.97438 * 5 4 2 7 7 C 1.50700 * 126.04545 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46800 * 90.00183 * 7 6 5 9 9 C 1.46495 * 120.00155 * 90.00420 * 8 7 6 10 10 C 1.50708 * 109.47355 * 89.99457 * 9 8 7 11 11 C 1.38202 * 120.00183 * 270.28047 * 10 9 8 12 12 C 1.38258 * 120.00086 * 180.02562 * 11 10 9 13 13 C 1.38213 * 119.99955 * 359.96952 * 12 11 10 14 14 C 1.38257 * 119.99905 * 359.97438 * 13 12 11 15 Xx 1.81002 * 119.99942 * 179.97438 * 14 13 12 16 15 F 9.65680 * 126.89761 * 163.85757 * 6 1 2 17 16 F 1.60995 * 89.99779 * 315.00059 * 15 14 13 18 17 F 1.60999 * 89.99821 * 134.99798 * 15 14 13 19 18 F 1.61000 * 89.99922 * 45.00355 * 15 14 13 20 19 F 1.60995 * 90.00069 * 224.99888 * 15 14 13 21 20 C 1.38215 * 119.99703 * 359.81102 * 14 13 12 22 21 C 1.34780 * 120.00270 * 270.00369 * 8 7 6 23 22 O 1.21284 * 120.00360 * 180.02562 * 22 8 7 24 23 C 1.50704 * 119.99926 * 359.97438 * 22 8 7 25 24 C 1.52999 * 109.47245 * 179.97438 * 24 22 8 26 25 Si 1.86298 * 109.46928 * 180.02562 * 25 24 22 27 26 H 1.48488 * 109.47335 * 60.00549 * 26 25 24 28 27 H 1.48499 * 109.46780 * 180.02562 * 26 25 24 29 28 H 1.48504 * 109.47060 * 299.99813 * 26 25 24 30 29 C 1.39872 * 107.91709 * 0.02562 * 6 5 4 31 30 N 1.30837 * 108.20302 * 359.71167 * 30 6 5 32 31 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 33 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 34 33 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 35 34 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 36 35 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 37 36 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 38 37 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 39 38 H 1.08004 * 126.13239 * 359.97438 * 5 4 2 40 39 H 1.08993 * 109.47212 * 210.00479 * 7 6 5 41 40 H 1.09000 * 109.46848 * 330.00864 * 7 6 5 42 41 H 1.09000 * 109.47629 * 209.99470 * 9 8 7 43 42 H 1.09004 * 109.47166 * 329.99970 * 9 8 7 44 43 H 1.07999 * 119.99944 * 359.97390 * 11 10 9 45 44 H 1.08005 * 120.00258 * 179.97438 * 12 11 10 46 45 H 1.08003 * 120.00164 * 179.97438 * 13 12 11 47 46 H 1.08007 * 119.99536 * 180.02562 * 21 14 13 48 47 H 1.09000 * 109.46980 * 300.00530 * 24 22 8 49 48 H 1.09004 * 109.46917 * 60.00325 * 24 22 8 50 49 H 1.08994 * 109.46904 * 300.00731 * 25 24 22 51 50 H 1.09004 * 109.46864 * 60.00334 * 25 24 22 52 51 H 1.07999 * 125.90077 * 180.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1882 -0.1406 2.4167 6 6 2.6528 -1.1061 3.2432 7 6 2.9838 -0.9392 4.7039 8 7 1.7942 -1.2245 5.5098 9 6 1.5353 -2.5888 5.9763 10 6 2.1856 -2.7920 7.3206 11 6 3.4858 -3.2541 7.3966 12 6 4.0821 -3.4410 8.6299 13 6 3.3781 -3.1651 9.7868 14 6 2.0777 -2.7016 9.7108 15 9 0.3362 -2.0196 12.5734 16 9 1.6738 -3.7222 11.8702 17 9 0.6373 -0.9594 10.5815 18 9 2.4403 -1.5787 11.8264 19 9 -0.1292 -3.1029 10.6254 20 6 1.4832 -2.5106 8.4778 21 6 0.9378 -0.2317 5.8221 22 8 -0.0468 -0.4677 6.4898 23 6 1.2043 1.1720 5.3428 24 6 0.0886 2.0981 5.8309 25 14 0.4177 3.8332 5.2376 26 1 0.4603 3.8491 3.7534 27 1 -0.6649 4.7322 5.7119 28 1 1.7204 4.3014 5.7753 29 6 2.7715 -2.2864 2.5022 30 7 2.3859 -2.0400 1.2764 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.9890 0.8862 2.6858 39 1 3.7818 -1.6297 4.9768 40 1 3.3103 0.0844 4.8877 41 1 0.4602 -2.7445 6.0655 42 1 1.9477 -3.3015 5.2619 43 1 4.0358 -3.4701 6.4926 44 1 5.0981 -3.8026 8.6893 45 1 3.8437 -3.3114 10.7503 46 1 0.4675 -2.1482 8.4184 47 1 2.1607 1.5152 5.7373 48 1 1.2354 1.1841 4.2532 49 1 -0.8675 1.7546 5.4360 50 1 0.0571 2.0861 6.9204 51 1 3.1165 -3.2383 2.8782 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18161096_16731132_13179792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 15 2021 08:44:42 Heat of formation + Delta-G solvation = 444.654085 kcal Electronic energy + Delta-G solvation = -40922.831291 eV Core-core repulsion = 34994.674785 eV Total energy + Delta-G solvation = -5928.156506 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 409.166 amu Computer time = 12.01 seconds Orbital eigenvalues (eV) -44.37943 -44.26436 -44.15815 -44.08855 -43.57528 -42.27235 -41.42605 -40.40197 -37.22348 -36.37967 -34.32322 -33.02337 -32.35069 -31.41862 -31.04699 -28.31202 -28.09018 -26.85286 -24.66950 -23.86888 -23.61538 -22.56270 -21.58489 -20.94550 -19.84081 -18.29339 -18.25889 -17.63100 -17.24722 -16.91204 -16.65188 -16.18911 -15.94996 -15.71995 -15.55041 -15.33629 -15.17930 -15.14167 -15.01328 -14.99011 -14.76673 -14.65314 -14.48961 -14.31298 -14.16567 -14.15063 -14.10149 -14.02803 -13.88673 -13.84250 -13.72189 -13.68242 -13.60869 -13.37098 -13.24802 -13.21011 -13.09606 -12.97152 -12.75506 -12.50883 -12.34382 -12.33663 -12.26212 -12.11910 -11.98469 -11.89554 -11.64366 -11.51064 -11.47744 -11.39805 -10.91540 -10.69614 -10.42044 -10.31888 -9.83272 -9.31297 -5.26530 -4.81917 -3.01536 -0.62749 -0.43228 1.03597 1.45965 1.59808 1.62129 1.64830 1.69146 1.72741 2.02171 2.10685 2.52525 2.74619 3.03221 3.47223 3.55105 3.57145 3.73658 3.79174 3.86294 3.91885 3.96013 4.04493 4.10006 4.11119 4.23719 4.32380 4.35221 4.45444 4.50320 4.59277 4.63404 4.64131 4.73186 4.78125 4.78579 4.80303 4.84471 4.93602 4.98920 4.99742 5.05610 5.12376 5.15649 5.21458 5.23353 5.38620 5.59907 5.86265 6.19530 6.38540 6.89605 7.24421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.372 5.372 5 C 0.060 3.940 6 C -0.264 4.264 7 C 0.181 3.819 8 N -0.601 5.601 9 C 0.152 3.848 10 C -0.044 4.044 11 C -0.059 4.059 12 C -0.033 4.033 13 C -0.117 4.117 14 C 0.318 3.682 15 F -0.219 7.219 16 F -0.159 7.159 17 F -0.164 7.164 18 F -0.160 7.160 19 F -0.172 7.172 20 C -0.115 4.115 21 C 0.509 3.491 22 O -0.577 6.577 23 C -0.137 4.137 24 C -0.340 4.340 25 Si 1.001 2.999 26 H -0.251 1.251 27 H -0.296 1.296 28 H -0.262 1.262 29 C 0.059 3.941 30 N -0.345 5.345 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.188 0.812 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.153 0.847 43 H 0.226 0.774 44 H 0.229 0.771 45 H 0.184 0.816 46 H 0.154 0.846 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.678 -0.659 -15.646 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 C -0.219 4.219 4 N -0.153 5.153 5 C -0.087 4.087 6 C -0.277 4.277 7 C 0.059 3.941 8 N -0.332 5.332 9 C 0.029 3.971 10 C -0.046 4.046 11 C -0.076 4.076 12 C -0.050 4.050 13 C -0.135 4.135 14 C 0.314 3.686 15 F -0.219 7.219 16 F -0.158 7.158 17 F -0.163 7.163 18 F -0.159 7.159 19 F -0.170 7.170 20 C -0.133 4.133 21 C 0.299 3.701 22 O -0.456 6.456 23 C -0.176 4.176 24 C -0.432 4.432 25 Si 0.828 3.172 26 H -0.174 1.174 27 H -0.223 1.223 28 H -0.186 1.186 29 C -0.127 4.127 30 N -0.165 5.165 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.205 0.795 39 H 0.151 0.849 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.242 0.758 44 H 0.246 0.754 45 H 0.201 0.799 46 H 0.171 0.829 47 H 0.145 0.855 48 H 0.131 0.869 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 13.111 -0.338 -16.987 21.461 hybrid contribution -1.924 0.365 2.679 3.318 sum 11.187 0.028 -14.308 18.162 Atomic orbital electron populations 1.22212 0.93494 1.02283 1.03982 1.21419 0.94841 0.93705 0.85351 1.22200 1.02194 0.92613 1.04901 1.49040 1.49988 1.07142 1.09177 1.22893 0.99514 1.00900 0.85416 1.20535 1.15550 0.93318 0.98258 1.20219 0.85761 1.05437 0.82655 1.48260 1.25838 1.07207 1.51884 1.20604 1.01625 0.85215 0.89649 1.20796 0.94821 0.98188 0.90793 1.22423 0.91855 0.91771 1.01567 1.22217 1.01497 0.95820 0.85419 1.22468 0.87267 0.98648 1.05074 1.27985 0.81382 1.09368 0.49852 2.00000 1.91183 1.30734 1.99947 1.99920 1.99883 1.18193 1.97772 1.99921 1.94099 1.34154 1.88135 1.99920 1.66193 1.52317 1.97426 1.99920 1.85988 1.40319 1.90822 1.21984 1.05015 1.00934 0.85370 1.21296 0.81830 0.88323 0.78608 1.90746 1.29998 1.84390 1.40493 1.21682 1.01701 0.90461 1.03744 1.25093 1.01899 1.10389 1.05856 0.84574 0.78879 0.74043 0.79675 1.17415 1.22256 1.18648 1.24333 0.97910 1.00385 0.90053 1.77397 1.22081 0.94393 1.22677 0.88954 0.93558 0.91842 0.88713 0.90646 0.91525 0.88720 0.79478 0.84908 0.87483 0.90519 0.82935 0.75793 0.75427 0.79891 0.82896 0.85502 0.86901 0.90365 0.90787 0.77292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 117. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.99 9.52 71.98 0.69 1.68 16 2 C 0.15 -0.94 3.93 44.99 0.18 -0.77 16 3 C -0.16 1.72 8.84 71.98 0.64 2.36 16 4 N -0.37 1.55 3.52 -327.48 -1.15 0.39 16 5 C 0.06 -0.55 9.69 83.54 0.81 0.26 16 6 C -0.26 3.19 5.68 -20.14 -0.11 3.08 16 7 C 0.18 -3.29 5.69 85.63 0.49 -2.80 16 8 N -0.60 6.96 2.44 -830.50 -2.03 4.94 16 9 C 0.15 -1.97 5.53 85.64 0.47 -1.50 16 10 C -0.04 0.57 5.46 -19.87 -0.11 0.46 16 11 C -0.06 1.32 9.70 22.27 0.22 1.53 16 12 C -0.03 0.67 10.05 22.27 0.22 0.90 16 13 C -0.12 0.98 8.62 22.27 0.19 1.17 16 14 C 0.32 0.74 4.82 22.27 0.11 0.84 16 15 F -0.22 -6.64 16.66 44.97 0.75 -5.89 16 16 F -0.16 -2.89 15.31 44.97 0.69 -2.20 16 17 F -0.16 -3.64 15.30 44.97 0.69 -2.96 16 18 F -0.16 -2.89 15.31 44.97 0.69 -2.20 16 19 F -0.17 -3.75 15.32 44.97 0.69 -3.06 16 20 C -0.11 0.14 8.28 22.27 0.18 0.33 16 21 C 0.51 -1.63 7.67 87.66 0.67 -0.96 16 22 O -0.58 -4.38 15.10 -3.04 -0.05 -4.42 16 23 C -0.14 1.13 3.62 29.85 0.11 1.24 16 24 C -0.34 0.98 3.74 71.98 0.27 1.25 16 25 Si 1.00 -4.07 29.30 68.60 2.01 -2.06 16 26 H -0.25 1.48 7.11 99.48 0.71 2.18 16 27 H -0.30 -0.73 7.11 99.48 0.71 -0.02 16 28 H -0.26 0.92 7.11 99.48 0.71 1.62 16 29 C 0.06 -0.53 11.96 85.24 1.02 0.49 16 30 N -0.35 0.32 12.58 -57.02 -0.72 -0.40 16 31 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 33 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.07 -0.93 7.16 -2.39 -0.02 -0.95 16 36 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 38 H 0.19 -2.64 5.39 -2.91 -0.02 -2.65 16 39 H 0.13 -3.44 8.06 -2.39 -0.02 -3.46 16 40 H 0.11 -2.20 6.44 -2.39 -0.02 -2.21 16 41 H 0.08 -0.45 7.36 -2.39 -0.02 -0.46 16 42 H 0.15 -3.30 8.02 -2.38 -0.02 -3.32 16 43 H 0.23 -7.41 8.05 -2.91 -0.02 -7.43 16 44 H 0.23 -6.71 8.06 -2.91 -0.02 -6.73 16 45 H 0.18 -1.50 7.40 -2.91 -0.02 -1.52 16 46 H 0.15 0.98 6.93 -2.91 -0.02 0.96 16 47 H 0.13 -1.78 7.23 -2.39 -0.02 -1.80 16 48 H 0.11 -1.45 4.97 -2.39 -0.01 -1.46 16 49 H 0.08 -0.03 7.92 -2.39 -0.02 -0.05 16 50 H 0.07 0.08 7.92 -2.39 -0.02 0.06 16 51 H 0.21 -3.49 8.06 -2.91 -0.02 -3.51 16 Total: 0.00 -52.08 442.78 9.33 -42.75 By element: Atomic # 1 Polarization: -36.17 SS G_CDS: 1.72 Total: -34.44 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.04 Total: 9.56 kcal Atomic # 7 Polarization: 8.83 SS G_CDS: -3.90 Total: 4.93 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.05 Total: -4.42 kcal Atomic # 9 Polarization: -19.81 SS G_CDS: 3.50 Total: -16.31 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.01 Total: -2.06 kcal Total: -52.08 9.33 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18161096_16731132_13179792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 487.401 kcal (2) G-P(sol) polarization free energy of solvation -52.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 435.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 444.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.01 seconds