Wall clock time and date at job start Thu Apr 22 2021 12:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21283 * 1 3 3 C 1.50700 * 119.99803 * 2 1 4 4 C 1.53004 * 109.47208 * 359.97438 * 3 2 1 5 5 Si 1.86298 * 109.47085 * 179.97438 * 4 3 2 6 6 H 1.48501 * 109.47220 * 60.00249 * 5 4 3 7 7 H 1.48508 * 109.46860 * 179.97438 * 5 4 3 8 8 H 1.48500 * 109.47235 * 299.99778 * 5 4 3 9 9 N 1.34777 * 120.00463 * 179.72122 * 2 1 3 10 10 C 1.46496 * 120.00345 * 179.97438 * 9 2 1 11 11 C 1.53005 * 109.46942 * 90.00092 * 10 9 2 12 12 S 1.81399 * 109.47036 * 180.02562 * 11 10 9 13 13 O 1.42101 * 110.54241 * 291.62751 * 12 11 10 14 14 O 1.42096 * 110.54250 * 68.37868 * 12 11 10 15 15 C 1.76200 * 104.44899 * 180.02562 * 12 11 10 16 16 C 1.38245 * 119.97045 * 270.27789 * 15 12 11 17 17 C 1.38194 * 120.02264 * 180.02562 * 16 15 12 18 18 C 1.38461 * 119.97959 * 359.97438 * 17 16 15 19 19 F 1.35090 * 120.03150 * 180.02562 * 18 17 16 20 20 C 1.38461 * 119.94399 * 359.97438 * 18 17 16 21 21 C 1.38198 * 119.97407 * 359.77316 * 20 18 17 22 22 C 1.46497 * 119.99525 * 0.02562 * 9 2 1 23 23 C 1.50709 * 109.47273 * 89.99834 * 22 9 2 24 24 C 1.38211 * 119.99871 * 270.27188 * 23 22 9 25 25 C 1.38252 * 119.99782 * 180.02562 * 24 23 22 26 Xx 1.81004 * 119.99836 * 179.97438 * 25 24 23 27 26 F 6.99881 * 49.63355 * 249.21025 * 2 1 3 28 27 F 1.61003 * 90.00045 * 134.99907 * 26 25 24 29 28 F 1.61006 * 89.99846 * 314.99577 * 26 25 24 30 29 F 1.61006 * 89.99836 * 224.99911 * 26 25 24 31 30 F 1.60997 * 90.00055 * 44.99834 * 26 25 24 32 31 C 1.38216 * 120.00424 * 359.95354 * 25 24 23 33 32 C 1.38256 * 119.99516 * 0.02562 * 32 25 24 34 33 C 1.38213 * 120.00497 * 359.77232 * 33 32 25 35 34 H 1.09009 * 109.47352 * 119.99681 * 3 2 1 36 35 H 1.08998 * 109.47585 * 239.99969 * 3 2 1 37 36 H 1.09000 * 109.46887 * 300.00372 * 4 3 2 38 37 H 1.08998 * 109.46846 * 59.99549 * 4 3 2 39 38 H 1.08995 * 109.47364 * 210.00706 * 10 9 2 40 39 H 1.09002 * 109.47090 * 330.00257 * 10 9 2 41 40 H 1.08998 * 109.46999 * 300.00039 * 11 10 9 42 41 H 1.08997 * 109.46656 * 60.00331 * 11 10 9 43 42 H 1.07997 * 119.99226 * 359.97421 * 16 15 12 44 43 H 1.08000 * 120.01335 * 179.97438 * 17 16 15 45 44 H 1.07996 * 120.01476 * 179.97438 * 20 18 17 46 45 H 1.08003 * 119.98646 * 180.02562 * 21 20 18 47 46 H 1.09000 * 109.46889 * 209.99487 * 22 9 2 48 47 H 1.09001 * 109.47460 * 330.00097 * 22 9 2 49 48 H 1.07996 * 120.00138 * 359.97380 * 24 23 22 50 49 H 1.07990 * 120.00359 * 180.02562 * 32 25 24 51 50 H 1.07996 * 119.99862 * 179.97438 * 33 32 25 52 51 H 1.07995 * 120.00792 * 180.02562 * 34 33 32 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 6 1.9663 1.3051 0.0000 4 6 0.9720 2.4681 -0.0006 5 14 1.9035 4.0815 0.0001 6 1 2.7581 4.1603 -1.2118 7 1 0.9383 5.2102 -0.0011 8 1 2.7563 4.1601 1.2133 9 7 1.8868 -1.1671 0.0057 10 6 3.3518 -1.1671 0.0051 11 6 3.8623 -1.1598 1.4475 12 16 5.6763 -1.1590 1.4468 13 8 6.1753 -2.3981 0.9622 14 8 6.1742 0.0758 0.9502 15 6 6.1166 -1.1512 3.1529 16 6 6.2830 0.0495 3.8176 17 6 6.6288 0.0569 5.1556 18 6 6.8081 -1.1387 5.8305 19 9 7.1457 -1.1327 7.1385 20 6 6.6401 -2.3406 5.1638 21 6 6.2892 -2.3456 3.8272 22 6 1.1543 -2.4358 0.0113 23 6 0.9036 -2.8775 -1.4077 24 6 -0.2452 -2.4769 -2.0633 25 6 -0.4754 -2.8825 -3.3648 26 9 -3.3201 -1.8927 -4.9853 27 9 -1.1116 -2.0093 -5.5331 28 9 -2.8490 -2.7077 -2.9135 29 9 -2.1939 -3.8595 -4.7651 30 9 -1.7667 -0.8575 -3.6815 31 6 0.4437 -3.6878 -4.0106 32 6 1.5931 -4.0881 -3.3548 33 6 1.8254 -3.6793 -2.0552 34 1 2.5930 1.3630 0.8901 35 1 2.5930 1.3630 -0.8899 36 1 0.3457 2.4100 -0.8908 37 1 0.3450 2.4104 0.8891 38 1 3.7149 -2.0596 -0.5044 39 1 3.7149 -0.2797 -0.5134 40 1 3.4991 -0.2672 1.9569 41 1 3.4992 -2.0472 1.9658 42 1 6.1435 0.9820 3.2910 43 1 6.7592 0.9950 5.6747 44 1 6.7801 -3.2738 5.6890 45 1 6.1577 -3.2829 3.3071 46 1 1.7433 -3.1931 0.5288 47 1 0.2017 -2.3032 0.5241 48 1 -0.9635 -1.8478 -1.5587 49 1 0.2641 -4.0043 -5.0274 50 1 2.3112 -4.7177 -3.8593 51 1 2.7234 -3.9916 -1.5430 RHF calculation, no. of doubly occupied orbitals= 84 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18168748_18164856_13179792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 22 2021 12:17:07 Heat of formation + Delta-G solvation = 284.923572 kcal Electronic energy + Delta-G solvation = -46940.606518 eV Core-core repulsion = 40017.794624 eV Total energy + Delta-G solvation = -6922.811894 eV No. of doubly occupied orbitals = 84 Molecular weight (most abundant/longest-lived isotopes) = 473.105 amu Computer time = 18.38 seconds Orbital eigenvalues (eV) -50.15832 -44.39015 -44.27315 -44.16905 -44.09781 -43.58512 -41.64202 -40.53405 -39.96277 -38.11450 -37.34853 -36.93026 -34.48587 -33.17630 -32.39423 -32.27822 -31.91688 -31.62247 -28.07475 -25.50970 -24.60222 -24.24457 -24.08393 -23.67354 -22.60099 -20.17867 -19.98781 -19.13709 -18.53318 -18.31303 -18.04211 -17.70944 -17.64747 -17.16834 -16.88997 -16.81529 -16.57615 -16.46108 -15.97032 -15.69217 -15.61219 -15.35815 -15.18391 -15.15356 -15.03369 -14.93209 -14.80345 -14.67869 -14.66865 -14.50099 -14.40411 -14.37561 -14.27643 -14.17485 -14.14883 -13.92993 -13.85958 -13.83948 -13.69990 -13.63926 -13.61870 -13.36835 -13.25646 -13.10077 -12.99299 -12.97288 -12.73781 -12.57046 -12.27696 -12.22109 -12.20444 -12.06414 -11.99625 -11.90618 -11.74351 -11.61946 -11.49054 -11.48448 -10.95417 -10.72955 -10.47644 -10.26072 -10.25211 -9.95146 -5.27513 -4.82953 -3.03907 -0.97741 -0.66169 -0.46528 -0.39713 0.10361 1.47089 1.56828 1.61762 1.66494 1.75737 1.87303 2.09568 2.19603 2.28300 2.71500 2.97403 3.00274 3.06351 3.17240 3.41742 3.53328 3.57698 3.61141 3.69075 3.70369 3.80738 3.81136 3.94630 4.06090 4.14899 4.17005 4.22971 4.32041 4.42603 4.46439 4.47657 4.58742 4.61555 4.65964 4.76939 4.80723 4.81079 4.89836 4.94409 4.98216 4.99881 5.00334 5.01594 5.19738 5.31181 5.43873 5.68374 6.17849 7.12279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C 0.513 3.487 3 C -0.151 4.151 4 C -0.334 4.334 5 Si 0.994 3.006 6 H -0.269 1.269 7 H -0.295 1.295 8 H -0.253 1.253 9 N -0.598 5.598 10 C 0.093 3.907 11 C -0.623 4.623 12 S 2.517 3.483 13 O -0.950 6.950 14 O -0.960 6.960 15 C -0.680 4.680 16 C -0.003 4.003 17 C -0.185 4.185 18 C 0.130 3.870 19 F -0.143 7.143 20 C -0.182 4.182 21 C 0.004 3.996 22 C 0.143 3.857 23 C -0.051 4.051 24 C -0.113 4.113 25 C 0.318 3.682 26 F -0.218 7.218 27 F -0.161 7.161 28 F -0.170 7.170 29 F -0.158 7.158 30 F -0.165 7.165 31 C -0.117 4.117 32 C -0.035 4.035 33 C -0.064 4.064 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.161 0.839 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.178 0.822 46 H 0.168 0.832 47 H 0.092 0.908 48 H 0.159 0.841 49 H 0.183 0.817 50 H 0.227 0.773 51 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.378 -7.178 7.970 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.441 6.441 2 C 0.303 3.697 3 C -0.190 4.190 4 C -0.427 4.427 5 Si 0.822 3.178 6 H -0.194 1.194 7 H -0.221 1.221 8 H -0.177 1.177 9 N -0.330 5.330 10 C -0.031 4.031 11 C -0.755 4.755 12 S 2.697 3.303 13 O -0.947 6.947 14 O -0.957 6.957 15 C -0.765 4.765 16 C -0.021 4.021 17 C -0.205 4.205 18 C 0.111 3.889 19 F -0.122 7.122 20 C -0.202 4.202 21 C -0.015 4.015 22 C 0.021 3.979 23 C -0.052 4.052 24 C -0.131 4.131 25 C 0.314 3.686 26 F -0.218 7.218 27 F -0.160 7.160 28 F -0.169 7.169 29 F -0.157 7.157 30 F -0.164 7.164 31 C -0.134 4.134 32 C -0.052 4.052 33 C -0.081 4.081 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.179 0.821 41 H 0.200 0.800 42 H 0.187 0.813 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.195 0.805 46 H 0.185 0.815 47 H 0.111 0.889 48 H 0.176 0.824 49 H 0.200 0.800 50 H 0.244 0.756 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 14.859 -6.368 7.413 17.784 hybrid contribution -2.615 0.720 0.437 2.748 sum 12.243 -5.649 7.849 15.602 Atomic orbital electron populations 1.90773 1.15956 1.87664 1.49689 1.21292 0.87758 0.86473 0.74199 1.21787 0.99400 0.90250 1.07563 1.24991 1.04398 1.06968 1.06363 0.84651 0.77708 0.75201 0.80190 1.19370 1.22120 1.17702 1.47940 1.06485 1.04962 1.73633 1.21854 0.79548 1.08714 0.92943 1.30859 1.20829 1.16472 1.07349 1.04913 0.78677 0.73761 0.72918 1.93581 1.78455 1.44754 1.77937 1.93591 1.78690 1.45703 1.77746 1.30838 1.19854 0.99218 1.26595 1.21138 0.89879 0.98268 0.92831 1.21568 1.04543 0.97998 0.96345 1.18414 0.96389 0.96062 0.78041 1.91537 1.89245 1.97539 1.33853 1.21610 1.04288 0.97771 0.96506 1.21185 0.89433 0.98279 0.92601 1.20886 1.00978 0.86896 0.89143 1.20858 0.88598 0.97535 0.98229 1.22024 1.00045 1.01664 0.89389 1.27976 0.53991 1.02568 0.84100 2.00000 1.83420 1.47500 1.90887 1.99921 1.57620 1.73927 1.84530 1.99920 1.90478 1.59893 1.66568 1.99920 1.96862 1.24271 1.94653 1.99921 1.71678 1.44894 1.99889 1.22463 0.89769 0.95559 1.05627 1.22210 0.90913 0.97793 0.94267 1.22487 0.99829 0.91784 0.94008 0.85094 0.85853 0.90696 0.89480 0.84141 0.86798 0.82067 0.79986 0.81302 0.82735 0.82282 0.80455 0.81506 0.88917 0.82400 0.79959 0.75617 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 161. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.77 15.07 -3.04 -0.05 -1.81 16 2 C 0.51 -3.73 7.67 87.66 0.67 -3.05 16 3 C -0.15 1.57 3.63 29.85 0.11 1.68 16 4 C -0.33 1.50 3.74 71.98 0.27 1.77 16 5 Si 0.99 -3.41 29.30 68.60 2.01 -1.40 16 6 H -0.27 0.45 7.11 99.48 0.71 1.16 16 7 H -0.30 -0.80 7.11 99.48 0.71 -0.10 16 8 H -0.25 1.09 7.11 99.48 0.71 1.79 16 9 N -0.60 9.72 2.46 -826.15 -2.03 7.69 16 10 C 0.09 -2.07 5.21 86.38 0.45 -1.62 16 11 C -0.62 14.43 6.30 71.98 0.45 14.88 16 12 S 2.52 -35.32 5.16 -56.49 -0.29 -35.61 16 13 O -0.95 8.85 17.12 -127.65 -2.19 6.67 16 14 O -0.96 6.29 17.13 -127.65 -2.19 4.11 16 15 C -0.68 7.10 5.66 22.27 0.13 7.22 16 16 C 0.00 0.02 9.47 22.26 0.21 0.23 16 17 C -0.19 1.06 10.03 22.31 0.22 1.29 16 18 C 0.13 -0.42 7.30 22.38 0.16 -0.26 16 19 F -0.14 -0.08 17.27 44.97 0.78 0.69 16 20 C -0.18 1.28 10.03 22.31 0.22 1.50 16 21 C 0.00 -0.04 9.47 22.26 0.21 0.17 16 22 C 0.14 -2.60 5.53 85.64 0.47 -2.12 16 23 C -0.05 0.78 5.46 -19.86 -0.11 0.67 16 24 C -0.11 0.41 8.28 22.27 0.18 0.59 16 25 C 0.32 0.30 4.82 22.27 0.11 0.40 16 26 F -0.22 -6.41 16.66 44.97 0.75 -5.66 16 27 F -0.16 -2.81 15.32 44.97 0.69 -2.12 16 28 F -0.17 -3.41 15.31 44.97 0.69 -2.72 16 29 F -0.16 -2.72 15.31 44.97 0.69 -2.04 16 30 F -0.17 -3.42 15.31 44.97 0.69 -2.73 16 31 C -0.12 1.07 8.62 22.27 0.19 1.26 16 32 C -0.04 0.74 10.05 22.27 0.22 0.96 16 33 C -0.06 1.50 9.70 22.27 0.22 1.72 16 34 H 0.13 -2.26 6.98 -2.38 -0.02 -2.28 16 35 H 0.12 -1.81 7.23 -2.39 -0.02 -1.83 16 36 H 0.07 -0.05 7.92 -2.39 -0.02 -0.07 16 37 H 0.09 -0.30 7.92 -2.39 -0.02 -0.32 16 38 H 0.14 -4.12 8.07 -2.39 -0.02 -4.14 16 39 H 0.11 -2.63 6.45 -2.39 -0.02 -2.65 16 40 H 0.16 -4.09 7.19 -2.39 -0.02 -4.10 16 41 H 0.18 -5.35 8.14 -2.39 -0.02 -5.37 16 42 H 0.17 -2.13 7.58 -2.91 -0.02 -2.15 16 43 H 0.15 -1.28 8.06 -2.91 -0.02 -1.30 16 44 H 0.16 -1.63 8.06 -2.91 -0.02 -1.66 16 45 H 0.18 -2.83 7.57 -2.91 -0.02 -2.85 16 46 H 0.17 -4.81 8.02 -2.39 -0.02 -4.83 16 47 H 0.09 -1.18 7.37 -2.39 -0.02 -1.19 16 48 H 0.16 0.50 6.90 -2.91 -0.02 0.48 16 49 H 0.18 -1.58 7.40 -2.92 -0.02 -1.60 16 50 H 0.23 -6.64 8.06 -2.91 -0.02 -6.67 16 51 H 0.23 -7.65 8.06 -2.91 -0.02 -7.68 16 Total: 0.00 -60.71 470.66 5.71 -54.99 By element: Atomic # 1 Polarization: -49.12 SS G_CDS: 1.76 Total: -47.36 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 4.40 Total: 27.30 kcal Atomic # 7 Polarization: 9.72 SS G_CDS: -2.03 Total: 7.69 kcal Atomic # 8 Polarization: 13.38 SS G_CDS: -4.42 Total: 8.96 kcal Atomic # 9 Polarization: -18.86 SS G_CDS: 4.28 Total: -14.58 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.01 Total: -1.40 kcal Atomic # 16 Polarization: -35.32 SS G_CDS: -0.29 Total: -35.61 kcal Total: -60.71 5.71 -54.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18168748_18164856_13179792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 339.914 kcal (2) G-P(sol) polarization free energy of solvation -60.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 279.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 284.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.38 seconds