Wall clock time and date at job start Thu Apr 22 2021 15:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47088 * 2 1 4 4 C 1.34804 * 117.00298 * 179.97438 * 3 2 1 5 5 O 1.21533 * 119.99478 * 0.02562 * 4 3 2 6 6 C 1.47159 * 120.00421 * 180.02562 * 4 3 2 7 7 N 1.30814 * 126.18191 * 0.30921 * 6 4 3 8 8 N 1.26260 * 116.23365 * 180.02562 * 7 6 4 9 9 C 1.29893 * 117.78775 * 0.02562 * 8 7 6 10 10 C 1.50693 * 125.54432 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47302 * 281.88345 * 10 9 8 12 12 N 1.46502 * 109.47072 * 41.88660 * 10 9 8 13 13 C 1.46499 * 119.99637 * 264.03882 * 12 10 9 14 14 C 1.50697 * 109.47290 * 88.52205 * 13 12 10 15 15 C 1.38214 * 119.99914 * 263.14320 * 14 13 12 16 16 C 1.38250 * 120.00191 * 179.97438 * 15 14 13 17 17 C 1.38211 * 120.00154 * 359.97438 * 16 15 14 18 18 C 1.38259 * 119.99726 * 359.97438 * 17 16 15 19 Xx 1.80999 * 119.99837 * 179.97438 * 18 17 16 20 19 F 9.43883 * 77.92371 * 28.89010 * 2 1 3 21 20 F 1.60998 * 90.00273 * 315.00394 * 19 18 17 22 21 F 1.60997 * 89.99931 * 135.00103 * 19 18 17 23 22 F 1.61002 * 90.00308 * 45.00132 * 19 18 17 24 23 F 1.60999 * 90.00160 * 225.00290 * 19 18 17 25 24 C 1.38211 * 120.00274 * 359.81591 * 18 17 16 26 25 C 1.34775 * 120.00085 * 84.03955 * 12 10 9 27 26 O 1.21285 * 120.00043 * 185.43654 * 26 12 10 28 27 C 1.50702 * 119.99992 * 5.43871 * 26 12 10 29 28 C 1.52999 * 109.46963 * 184.06247 * 28 26 12 30 29 Si 1.86298 * 109.47200 * 180.02562 * 29 28 26 31 30 H 1.48502 * 109.47116 * 59.99786 * 30 29 28 32 31 H 1.48500 * 109.47376 * 179.97438 * 30 29 28 33 32 H 1.48506 * 109.46744 * 299.99986 * 30 29 28 34 33 S 1.71280 * 108.91179 * 359.72595 * 9 8 7 35 34 H 1.09001 * 109.47158 * 299.99450 * 1 2 3 36 35 H 1.09003 * 109.47150 * 59.99741 * 1 2 3 37 36 H 1.08998 * 109.46906 * 179.97438 * 1 2 3 38 37 H 1.08994 * 109.47012 * 120.00367 * 2 1 3 39 38 H 1.09001 * 109.47158 * 240.00550 * 2 1 3 40 39 H 1.09007 * 109.47191 * 161.88529 * 10 9 8 41 40 H 1.09001 * 109.46870 * 172.91077 * 11 10 9 42 41 H 1.09002 * 109.47093 * 292.90892 * 11 10 9 43 42 H 1.08998 * 109.46678 * 52.91190 * 11 10 9 44 43 H 1.08999 * 109.47052 * 208.51849 * 13 12 10 45 44 H 1.08995 * 109.47629 * 328.51512 * 13 12 10 46 45 H 1.08002 * 119.99642 * 359.97346 * 15 14 13 47 46 H 1.08001 * 120.00216 * 179.97438 * 16 15 14 48 47 H 1.08001 * 120.00444 * 179.97438 * 17 16 15 49 48 H 1.08001 * 120.00370 * 179.97438 * 25 18 17 50 49 H 1.08991 * 109.46973 * 304.06260 * 28 26 12 51 50 H 1.09000 * 109.46881 * 64.06521 * 28 26 12 52 51 H 1.09005 * 109.47190 * 299.99976 * 29 28 26 53 52 H 1.08997 * 109.47318 * 59.99674 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 0.0005 5 8 4.0907 0.5818 0.0005 6 6 3.9129 2.9055 0.0011 7 7 3.2324 4.0227 0.0069 8 7 3.9093 5.0885 0.0058 9 6 5.2040 4.9836 -0.0014 10 6 6.1762 6.1350 -0.0045 11 6 6.2706 6.7191 -1.4155 12 7 5.7106 7.1697 0.9222 13 6 4.9339 8.3063 0.4209 14 6 3.4687 7.9542 0.4246 15 6 2.8639 7.5011 -0.7326 16 6 1.5198 7.1776 -0.7291 17 6 0.7809 7.3068 0.4318 18 6 1.3861 7.7591 1.5897 19 9 -0.4447 8.0813 4.4593 20 9 -0.7664 8.6324 2.2769 21 9 1.6030 7.2255 3.9426 22 9 -0.2507 6.4887 2.8448 23 9 1.0873 9.3692 3.3747 24 6 2.7308 8.0784 1.5873 25 6 5.9967 7.0761 2.2359 26 8 5.5294 7.8776 3.0170 27 6 6.8973 5.9754 2.7343 28 6 6.9771 6.0337 4.2611 29 14 8.0911 4.6735 4.8772 30 1 9.4496 4.8483 4.3035 31 1 8.1690 4.7305 6.3591 32 1 7.5431 3.3579 4.4601 33 16 5.6265 3.3237 0.0001 34 1 -0.3633 0.5138 0.8900 35 1 -0.3633 0.5139 -0.8900 36 1 -0.3633 -1.0277 -0.0005 37 1 1.8933 -0.5139 0.8899 38 1 1.8934 -0.5138 -0.8900 39 1 7.1586 5.7819 0.3091 40 1 6.8740 7.6266 -1.3934 41 1 6.7347 5.9903 -2.0800 42 1 5.2705 6.9563 -1.7781 43 1 5.1012 9.1717 1.0620 44 1 5.2486 8.5412 -0.5959 45 1 3.4413 7.3997 -1.6396 46 1 1.0471 6.8239 -1.6334 47 1 -0.2693 7.0545 0.4345 48 1 3.2035 8.4321 2.4916 49 1 6.4947 5.0099 2.4281 50 1 7.8946 6.1033 2.3133 51 1 7.3797 6.9993 4.5673 52 1 5.9799 5.9059 4.6822 RHF calculation, no. of doubly occupied orbitals= 84 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18175330_18164856_13179792.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 22 2021 15:19:17 Heat of formation + Delta-G solvation = 366.475682 kcal Electronic energy + Delta-G solvation = -49461.855489 eV Core-core repulsion = 42725.644494 eV Total energy + Delta-G solvation = -6736.210994 eV No. of doubly occupied orbitals = 84 Molecular weight (most abundant/longest-lived isotopes) = 471.121 amu Computer time = 20.35 seconds Orbital eigenvalues (eV) -44.64877 -44.36727 -43.94395 -43.78711 -43.63746 -42.66506 -41.76740 -41.40626 -40.53830 -38.01967 -37.89639 -34.62091 -33.69320 -33.05579 -32.45349 -32.35566 -31.31779 -28.83631 -28.07579 -25.42733 -24.98823 -24.33415 -23.91775 -23.33129 -22.52316 -21.82022 -20.56781 -20.14686 -18.85908 -18.35961 -18.28248 -18.03965 -17.92933 -17.28986 -17.13514 -16.84579 -16.61864 -16.07425 -15.87093 -15.71818 -15.38700 -15.27773 -15.21776 -15.19199 -15.02083 -14.93889 -14.93358 -14.83133 -14.55203 -14.36151 -14.31831 -14.22679 -14.06054 -14.01726 -13.78324 -13.72220 -13.71052 -13.48455 -13.47158 -13.31225 -13.26890 -13.11610 -13.09109 -12.86346 -12.71373 -12.65882 -12.57776 -12.48818 -12.45563 -12.30595 -12.13593 -12.09103 -11.82903 -11.69883 -11.68960 -11.62349 -11.54673 -11.23608 -11.17335 -10.97053 -10.93041 -10.58539 -10.44477 -10.12706 -5.34044 -4.89500 -2.92671 -1.43397 -0.71821 -0.56345 -0.39909 -0.07670 0.63135 1.30751 1.38976 1.46477 1.50289 1.55725 1.61133 1.74373 2.07500 2.24048 2.61833 2.78051 3.02323 3.08156 3.43462 3.46552 3.57135 3.61213 3.68086 3.76114 3.81719 3.88633 3.93052 3.93630 3.98304 4.08539 4.16353 4.26348 4.26651 4.43299 4.54180 4.59735 4.66692 4.67739 4.74039 4.85157 4.86347 4.87959 4.92153 4.95899 5.00182 5.18265 5.19843 5.24169 5.32865 5.44053 6.07290 6.19102 7.00737 7.12108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.339 6.339 4 C 0.556 3.444 5 O -0.506 6.506 6 C -0.083 4.083 7 N -0.189 5.189 8 N -0.261 5.261 9 C -0.024 4.024 10 C 0.208 3.792 11 C -0.166 4.166 12 N -0.596 5.596 13 C 0.146 3.854 14 C -0.041 4.041 15 C -0.039 4.039 16 C -0.037 4.037 17 C -0.114 4.114 18 C 0.338 3.662 19 F -0.086 7.086 20 F -0.249 7.249 21 F -0.215 7.215 22 F -0.121 7.121 23 F -0.217 7.217 24 C -0.111 4.111 25 C 0.514 3.486 26 O -0.557 6.557 27 C -0.143 4.143 28 C -0.339 4.339 29 Si 0.996 3.004 30 H -0.243 1.243 31 H -0.293 1.293 32 H -0.270 1.270 33 S 0.320 5.680 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.166 0.834 45 H 0.207 0.793 46 H 0.215 0.785 47 H 0.174 0.826 48 H 0.152 0.848 49 H 0.097 0.903 50 H 0.148 0.852 51 H 0.091 0.909 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.032 -3.943 -18.354 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.255 6.255 4 C 0.395 3.605 5 O -0.394 6.394 6 C -0.358 4.358 7 N -0.036 5.036 8 N -0.103 5.103 9 C -0.300 4.300 10 C 0.101 3.899 11 C -0.224 4.224 12 N -0.329 5.329 13 C 0.025 3.975 14 C -0.043 4.043 15 C -0.057 4.057 16 C -0.054 4.054 17 C -0.132 4.132 18 C 0.334 3.666 19 F -0.086 7.086 20 F -0.248 7.248 21 F -0.213 7.213 22 F -0.120 7.120 23 F -0.216 7.216 24 C -0.129 4.129 25 C 0.304 3.696 26 O -0.434 6.434 27 C -0.182 4.182 28 C -0.431 4.431 29 Si 0.823 3.177 30 H -0.166 1.166 31 H -0.219 1.219 32 H -0.195 1.195 33 S 0.565 5.435 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.172 0.828 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.183 0.817 45 H 0.224 0.776 46 H 0.232 0.768 47 H 0.191 0.809 48 H 0.170 0.830 49 H 0.115 0.885 50 H 0.165 0.835 51 H 0.110 0.890 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.355 -4.400 -17.636 22.555 hybrid contribution -2.133 0.058 2.424 3.230 sum 11.221 -4.342 -15.212 19.395 Atomic orbital electron populations 1.21854 0.90711 1.04516 1.03671 1.23486 0.96859 0.77826 1.03580 1.86668 1.21444 1.34717 1.82646 1.19283 0.81903 0.86343 0.72925 1.90957 1.60923 1.41215 1.46292 1.28363 0.96388 0.96810 1.14254 1.72227 1.29938 0.93217 1.08229 1.71422 1.03440 1.19752 1.15711 1.30971 0.97221 1.01575 1.00237 1.20415 0.93364 0.81656 0.94510 1.22414 1.05417 1.04429 0.90149 1.48144 1.53976 1.23917 1.06831 1.20921 0.82109 0.88909 1.05605 1.20666 0.97072 0.98848 0.87666 1.22085 0.94450 0.90044 0.99111 1.21917 0.93410 0.96484 0.93549 1.22203 1.05668 0.99825 0.85521 1.27581 0.77934 1.10642 0.50415 1.99962 1.68273 1.84327 1.56013 1.99927 1.96594 1.49116 1.79122 1.99935 1.47627 1.85122 1.88646 1.99948 1.48671 1.87943 1.75478 1.99915 1.70315 1.75873 1.75500 1.21865 0.87965 1.01162 1.01922 1.21324 0.80717 0.86048 0.81539 1.90771 1.53196 1.44153 1.55277 1.21711 1.02405 0.97363 0.96757 1.25057 1.08528 1.11338 0.98188 0.84636 0.78532 0.76200 0.78319 1.16564 1.21906 1.19472 1.84901 1.01190 0.97438 1.59964 0.91981 0.90946 0.87921 0.90660 0.89702 0.82839 0.87016 0.87888 0.89908 0.88428 0.81688 0.77645 0.76825 0.80878 0.83029 0.88470 0.83451 0.89002 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 168. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 10.29 71.98 0.74 1.37 16 2 C 0.06 -0.07 6.20 71.98 0.45 0.38 16 3 O -0.34 -1.05 10.23 -57.15 -0.58 -1.64 16 4 C 0.56 1.58 7.95 70.16 0.56 2.14 16 5 O -0.51 -2.94 16.77 19.73 0.33 -2.61 16 6 C -0.08 0.12 7.60 87.19 0.66 0.78 16 7 N -0.19 0.22 11.72 -49.79 -0.58 -0.37 16 8 N -0.26 1.76 8.17 -50.59 -0.41 1.35 16 9 C -0.02 0.30 5.80 88.39 0.51 0.81 16 10 C 0.21 -3.87 2.75 44.24 0.12 -3.74 16 11 C -0.17 4.13 7.87 71.98 0.57 4.70 16 12 N -0.60 7.13 2.39 -806.33 -1.93 5.20 16 13 C 0.15 -1.93 5.06 85.63 0.43 -1.50 16 14 C -0.04 0.33 4.54 -19.87 -0.09 0.24 16 15 C -0.04 0.57 7.26 22.27 0.16 0.73 16 16 C -0.04 0.42 10.05 22.27 0.22 0.64 16 17 C -0.11 0.09 8.62 22.27 0.19 0.28 16 18 C 0.34 2.77 4.82 22.27 0.11 2.88 16 19 F -0.09 -2.55 16.65 44.97 0.75 -1.80 16 20 F -0.25 -5.72 15.30 44.97 0.69 -5.04 16 21 F -0.21 -5.53 15.31 44.97 0.69 -4.84 16 22 F -0.12 -2.60 15.31 44.97 0.69 -1.92 16 23 F -0.22 -5.56 15.32 44.97 0.69 -4.87 16 24 C -0.11 -0.40 8.18 22.27 0.18 -0.22 16 25 C 0.51 -2.04 7.60 87.66 0.67 -1.38 16 26 O -0.56 -3.66 14.37 -3.05 -0.04 -3.70 16 27 C -0.14 1.23 3.57 29.85 0.11 1.33 16 28 C -0.34 0.89 3.75 71.98 0.27 1.15 16 29 Si 1.00 -3.07 29.30 68.60 2.01 -1.06 16 30 H -0.24 1.27 7.11 99.48 0.71 1.97 16 31 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 32 H -0.27 0.40 7.11 99.48 0.71 1.11 16 33 S 0.32 -3.23 23.12 -56.49 -1.31 -4.53 16 34 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.15 -3.74 6.79 -2.38 -0.02 -3.76 16 40 H 0.11 -3.07 7.69 -2.39 -0.02 -3.09 16 41 H 0.10 -2.74 8.14 -2.39 -0.02 -2.76 16 42 H 0.08 -2.15 5.33 -2.39 -0.01 -2.16 16 43 H 0.10 -0.88 7.45 -2.39 -0.02 -0.90 16 44 H 0.17 -3.86 5.57 -2.39 -0.01 -3.88 16 45 H 0.21 -4.95 6.23 -2.91 -0.02 -4.97 16 46 H 0.22 -4.15 8.06 -2.91 -0.02 -4.17 16 47 H 0.17 -0.06 7.40 -2.91 -0.02 -0.09 16 48 H 0.15 1.60 6.28 -2.91 -0.02 1.58 16 49 H 0.10 -1.08 7.24 -2.39 -0.02 -1.10 16 50 H 0.15 -2.55 7.60 -2.39 -0.02 -2.56 16 51 H 0.09 -0.16 7.88 -2.38 -0.02 -0.18 16 52 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 Total: 0.00 -50.54 467.50 8.62 -41.92 By element: Atomic # 1 Polarization: -28.48 SS G_CDS: 1.77 Total: -26.70 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.86 Total: 10.60 kcal Atomic # 7 Polarization: 9.10 SS G_CDS: -2.92 Total: 6.18 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.30 Total: -7.95 kcal Atomic # 9 Polarization: -21.96 SS G_CDS: 3.50 Total: -18.46 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.01 Total: -1.06 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.31 Total: -4.53 kcal Total: -50.54 8.62 -41.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18175330_18164856_13179792.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 408.400 kcal (2) G-P(sol) polarization free energy of solvation -50.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 357.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 366.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.35 seconds