Wall clock time and date at job start Fri Apr 23 2021 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21284 * 1 3 3 C 1.50699 * 119.99939 * 2 1 4 4 C 1.53001 * 109.47027 * 355.10524 * 3 2 1 5 5 Si 1.86301 * 109.47168 * 184.92812 * 4 3 2 6 6 H 1.48501 * 109.47092 * 295.00624 * 5 4 3 7 7 H 1.48497 * 109.46973 * 55.00286 * 5 4 3 8 8 H 1.48499 * 109.47285 * 175.00622 * 5 4 3 9 9 N 1.34777 * 119.99775 * 179.72004 * 2 1 3 10 10 C 1.46510 * 119.99817 * 184.58965 * 9 2 1 11 11 C 1.50697 * 109.47175 * 93.61355 * 10 9 2 12 12 C 1.35372 * 126.97551 * 26.18823 * 11 10 9 13 13 N 1.33768 * 106.53624 * 180.02562 * 12 11 10 14 14 N 1.28604 * 109.06257 * 359.97438 * 13 12 11 15 15 N 1.28730 * 110.23749 * 359.72092 * 14 13 12 16 16 C 1.40247 * 125.94696 * 180.02562 * 15 14 13 17 17 C 1.38820 * 120.06354 * 138.43358 * 16 15 14 18 18 C 1.38124 * 119.92951 * 180.02562 * 17 16 15 19 19 C 1.38275 * 120.07118 * 359.97438 * 18 17 16 20 20 C 1.38281 * 120.12668 * 0.02562 * 19 18 17 21 21 C 1.38131 * 120.06414 * 359.67950 * 20 19 18 22 22 C 1.46500 * 120.00619 * 4.58957 * 9 2 1 23 23 C 1.50699 * 109.46853 * 89.99565 * 22 9 2 24 24 C 1.38217 * 120.00050 * 270.27380 * 23 22 9 25 25 C 1.38256 * 119.99701 * 180.02562 * 24 23 22 26 26 C 1.38211 * 120.00119 * 359.97438 * 25 24 23 27 27 C 1.38250 * 120.00117 * 359.97438 * 26 25 24 28 Xx 1.81009 * 120.00071 * 179.97438 * 27 26 25 29 28 F 8.27955 * 111.24417 * 220.34346 * 2 1 3 30 29 F 1.61004 * 89.99845 * 314.99891 * 28 27 26 31 30 F 1.60996 * 89.99933 * 134.99868 * 28 27 26 32 31 F 1.60996 * 89.99898 * 44.99782 * 28 27 26 33 32 F 1.61001 * 89.99660 * 224.99903 * 28 27 26 34 33 C 1.38213 * 120.00256 * 359.81552 * 27 26 25 35 34 H 1.08998 * 109.47057 * 115.10812 * 3 2 1 36 35 H 1.08997 * 109.46949 * 235.10636 * 3 2 1 37 36 H 1.08993 * 109.46977 * 304.92819 * 4 3 2 38 37 H 1.09005 * 109.46891 * 64.93028 * 4 3 2 39 38 H 1.09005 * 109.46918 * 213.61612 * 10 9 2 40 39 H 1.09002 * 109.46599 * 333.61437 * 10 9 2 41 40 H 1.08000 * 126.72939 * 359.97438 * 12 11 10 42 41 H 1.07993 * 120.03232 * 359.97438 * 17 16 15 43 42 H 1.08000 * 119.96692 * 179.97438 * 18 17 16 44 43 H 1.07999 * 119.93970 * 180.02562 * 19 18 17 45 44 H 1.07997 * 119.96655 * 179.97438 * 20 19 18 46 45 H 1.08003 * 120.02931 * 180.02562 * 21 20 19 47 46 H 1.08998 * 109.47543 * 210.00155 * 22 9 2 48 47 H 1.09001 * 109.46686 * 330.00133 * 22 9 2 49 48 H 1.08001 * 120.00148 * 359.97438 * 24 23 22 50 49 H 1.07996 * 119.99669 * 179.97438 * 25 24 23 51 50 H 1.08002 * 120.00052 * 179.97438 * 26 25 24 52 51 H 1.07996 * 120.00162 * 180.02562 * 34 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 6 1.9663 1.3051 0.0000 4 6 0.9766 2.4654 -0.1231 5 14 1.9143 4.0682 -0.2736 6 1 2.6641 4.3228 0.9826 7 1 2.8669 3.9795 -1.4093 8 1 0.9593 5.1797 -0.5140 9 7 1.8867 -1.1672 0.0057 10 6 3.3483 -1.1688 0.1072 11 6 3.7512 -1.3086 1.5526 12 6 3.0366 -1.8899 2.5445 13 7 3.7743 -1.7873 3.6557 14 7 4.8745 -1.1834 3.3752 15 7 4.9104 -0.8815 2.1243 16 6 5.9571 -0.2188 1.4669 17 6 6.3644 -0.6391 0.2081 18 6 7.3960 0.0153 -0.4365 19 6 8.0224 1.0882 0.1704 20 6 7.6188 1.5091 1.4242 21 6 6.5837 0.8625 2.0712 22 6 1.1578 -2.4344 -0.0896 23 6 1.0063 -2.8189 -1.5388 24 6 -0.0954 -2.3914 -2.2557 25 6 -0.2346 -2.7446 -3.5851 26 6 0.7281 -3.5248 -4.1974 27 6 1.8305 -3.9515 -3.4806 28 9 4.2129 -5.8817 -4.9957 29 9 1.9357 -5.8781 -4.9454 30 9 4.2462 -4.0695 -3.6191 31 9 3.0650 -4.0005 -5.5644 32 9 3.1169 -5.9472 -3.0000 33 6 1.9720 -3.5948 -2.1528 34 1 2.5256 1.4017 0.9305 35 1 2.6571 1.3258 -0.8429 36 1 0.3573 2.3222 -1.0085 37 1 0.3423 2.4973 0.7628 38 1 3.7513 -2.0045 -0.4649 39 1 3.7410 -0.2330 -0.2906 40 1 2.0617 -2.3462 2.4563 41 1 5.8759 -1.4773 -0.2662 42 1 7.7136 -0.3115 -1.4157 43 1 8.8284 1.5986 -0.3358 44 1 8.1101 2.3471 1.8960 45 1 6.2686 1.1920 3.0503 46 1 1.7109 -3.2123 0.4368 47 1 0.1719 -2.3212 0.3612 48 1 -0.8479 -1.7821 -1.7772 49 1 -1.0956 -2.4109 -4.1452 50 1 0.6191 -3.8010 -5.2357 51 1 2.8334 -3.9279 -1.5930 RHF calculation, no. of doubly occupied orbitals= 81 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_275550_18176238_18164856_13179792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 23 2021 03:05:11 Heat of formation + Delta-G solvation = 512.864398 kcal Electronic energy + Delta-G solvation = -45914.739958 eV Core-core repulsion = 39566.748419 eV Total energy + Delta-G solvation = -6347.991539 eV No. of doubly occupied orbitals = 81 Molecular weight (most abundant/longest-lived isotopes) = 444.145 amu Computer time = 48.17 seconds Orbital eigenvalues (eV) -44.61345 -44.33439 -44.19157 -44.14260 -44.05058 -43.48247 -41.66967 -40.55819 -40.28864 -37.34301 -35.75016 -34.41839 -33.34798 -32.59985 -32.31208 -31.84801 -30.93868 -28.69526 -27.50052 -25.15249 -24.88986 -24.22099 -23.96100 -22.92889 -22.60006 -21.96219 -20.27828 -19.36291 -18.45011 -18.17011 -17.86763 -17.50410 -17.22889 -17.03010 -16.94358 -16.17288 -15.96402 -15.76294 -15.59442 -15.58773 -15.26503 -15.19142 -15.14389 -14.93173 -14.89648 -14.77394 -14.67718 -14.51459 -14.26795 -14.15512 -14.11850 -14.11444 -14.06501 -13.98586 -13.94459 -13.85465 -13.57043 -13.56431 -13.41952 -13.29087 -13.16293 -12.89639 -12.80805 -12.61342 -12.45110 -12.40337 -12.24096 -12.13740 -12.01550 -11.88649 -11.72961 -11.68220 -11.53219 -11.36010 -11.02011 -10.75995 -10.54209 -10.34059 -10.17640 -10.11855 -9.84526 -5.21025 -4.75407 -3.07371 -0.68581 -0.51553 -0.36643 0.21081 0.64947 1.06816 1.39288 1.45917 1.52289 1.59862 1.62895 1.72450 2.06138 2.18460 2.56601 2.71103 2.94063 3.14756 3.36522 3.46462 3.50837 3.58197 3.64449 3.73030 3.73539 3.79912 3.87101 3.99456 4.03638 4.12920 4.15337 4.20227 4.25382 4.30334 4.36840 4.39777 4.45710 4.52965 4.60597 4.67654 4.70539 4.78504 4.89173 4.93848 4.96955 5.00548 5.10885 5.15073 5.20537 5.25626 5.40503 5.41928 5.49949 5.85526 6.06574 7.01790 7.30711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C 0.530 3.470 3 C -0.145 4.145 4 C -0.322 4.322 5 Si 0.987 3.013 6 H -0.285 1.285 7 H -0.261 1.261 8 H -0.283 1.283 9 N -0.602 5.602 10 C 0.179 3.821 11 C -0.029 4.029 12 C -0.035 4.035 13 N -0.299 5.299 14 N -0.111 5.111 15 N -0.232 5.232 16 C 0.086 3.914 17 C -0.110 4.110 18 C -0.100 4.100 19 C -0.099 4.099 20 C -0.105 4.105 21 C -0.107 4.107 22 C 0.143 3.857 23 C -0.040 4.040 24 C -0.067 4.067 25 C -0.035 4.035 26 C -0.110 4.110 27 C 0.323 3.677 28 F -0.221 7.221 29 F -0.163 7.163 30 F -0.156 7.156 31 F -0.160 7.160 32 F -0.162 7.162 33 C -0.102 4.102 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.214 0.786 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.152 0.848 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.132 0.868 48 H 0.189 0.811 49 H 0.216 0.784 50 H 0.180 0.820 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 9.276 -1.000 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.415 6.415 2 C 0.320 3.680 3 C -0.185 4.185 4 C -0.416 4.416 5 Si 0.818 3.182 6 H -0.211 1.211 7 H -0.185 1.185 8 H -0.208 1.208 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.161 4.161 12 C -0.193 4.193 13 N -0.163 5.163 14 N -0.088 5.088 15 N -0.021 5.021 16 C -0.003 4.003 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.127 4.127 22 C 0.021 3.979 23 C -0.042 4.042 24 C -0.085 4.085 25 C -0.052 4.052 26 C -0.128 4.128 27 C 0.319 3.681 28 F -0.221 7.221 29 F -0.162 7.162 30 F -0.155 7.155 31 F -0.159 7.159 32 F -0.161 7.161 33 C -0.120 4.120 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.230 0.770 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.170 0.830 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.150 0.850 48 H 0.206 0.794 49 H 0.232 0.768 50 H 0.197 0.803 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.815 10.149 0.377 11.239 hybrid contribution 0.717 -1.483 -1.137 2.002 sum -4.097 8.666 -0.760 9.616 Atomic orbital electron populations 1.90714 1.14464 1.87301 1.48996 1.20938 0.87843 0.85374 0.73839 1.21618 0.99725 0.91397 1.05716 1.24873 1.04060 1.05304 1.07336 0.84728 0.78080 0.76414 0.78994 1.21066 1.18528 1.20842 1.47869 1.05926 1.06036 1.73586 1.20256 0.80609 1.07384 0.86438 1.23231 0.87756 1.04822 1.00270 1.23804 1.02977 1.04706 0.87794 1.75111 0.99912 1.14536 1.26757 1.78491 1.17601 1.16502 0.96255 1.44788 1.13338 1.37183 1.06825 1.17825 0.92011 0.95990 0.94476 1.21269 0.98446 1.00747 0.92558 1.21455 0.94133 0.95008 1.01232 1.21793 0.99365 0.96011 0.94597 1.21422 0.95362 1.00195 0.95407 1.21169 0.96976 0.94053 1.00524 1.20843 1.02061 0.86050 0.88950 1.20528 0.91048 0.94839 0.97735 1.22231 0.97116 0.95394 0.93743 1.21986 0.96111 0.92410 0.94682 1.22223 0.88101 0.97386 1.05094 1.27747 0.68676 0.86500 0.85225 2.00000 1.78155 1.99865 1.44037 1.99920 1.50864 1.98352 1.67056 1.99917 1.80761 1.92502 1.42299 1.99920 1.76378 1.88930 1.50689 1.99919 1.95897 1.97469 1.22803 1.21830 1.02884 0.98170 0.89144 0.88602 0.86020 0.88120 0.89556 0.85229 0.85908 0.76964 0.83320 0.82239 0.82650 0.83010 0.85657 0.85814 0.84987 0.79394 0.76774 0.80302 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 443. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.80 15.26 -3.04 -0.05 2.75 16 2 C 0.53 -5.32 7.66 87.66 0.67 -4.64 16 3 C -0.15 1.59 3.60 29.85 0.11 1.69 16 4 C -0.32 2.78 3.76 71.98 0.27 3.05 16 5 Si 0.99 -5.41 29.30 68.60 2.01 -3.40 16 6 H -0.29 0.44 7.11 99.48 0.71 1.14 16 7 H -0.26 1.34 7.11 99.48 0.71 2.05 16 8 H -0.28 0.28 7.11 99.48 0.71 0.99 16 9 N -0.60 8.56 2.12 -830.47 -1.76 6.80 16 10 C 0.18 -2.50 4.34 85.63 0.37 -2.13 16 11 C -0.03 0.16 6.67 41.23 0.28 0.44 16 12 C -0.04 0.07 11.14 83.74 0.93 1.01 16 13 N -0.30 -2.23 12.39 -58.25 -0.72 -2.95 16 14 N -0.11 -0.86 12.94 37.02 0.48 -0.38 16 15 N -0.23 -0.01 3.47 -175.35 -0.61 -0.62 16 16 C 0.09 -0.25 6.12 38.07 0.23 -0.02 16 17 C -0.11 0.84 8.60 22.38 0.19 1.03 16 18 C -0.10 0.93 10.04 22.25 0.22 1.15 16 19 C -0.10 0.89 10.04 22.29 0.22 1.11 16 20 C -0.11 0.70 10.04 22.25 0.22 0.92 16 21 C -0.11 0.28 9.79 22.38 0.22 0.50 16 22 C 0.14 -2.42 4.77 85.63 0.41 -2.01 16 23 C -0.04 0.65 5.46 -19.86 -0.11 0.54 16 24 C -0.07 1.22 9.70 22.27 0.22 1.44 16 25 C -0.04 0.65 10.05 22.27 0.22 0.87 16 26 C -0.11 1.18 8.62 22.27 0.19 1.37 16 27 C 0.32 -1.38 4.82 22.27 0.11 -1.27 16 28 F -0.22 -5.26 16.66 44.97 0.75 -4.51 16 29 F -0.16 -2.22 15.32 44.97 0.69 -1.53 16 30 F -0.16 -1.61 15.30 44.97 0.69 -0.92 16 31 F -0.16 -2.00 15.31 44.97 0.69 -1.31 16 32 F -0.16 -2.05 15.32 44.97 0.69 -1.36 16 33 C -0.10 1.13 8.28 22.27 0.18 1.32 16 34 H 0.10 -0.99 8.07 -2.39 -0.02 -1.01 16 35 H 0.12 -1.93 7.03 -2.39 -0.02 -1.95 16 36 H 0.10 -0.97 7.85 -2.39 -0.02 -0.99 16 37 H 0.09 -0.58 7.96 -2.38 -0.02 -0.60 16 38 H 0.13 -2.33 7.69 -2.38 -0.02 -2.35 16 39 H 0.12 -2.02 5.61 -2.39 -0.01 -2.03 16 40 H 0.21 -1.84 6.98 -2.91 -0.02 -1.86 16 41 H 0.15 -1.71 6.74 -2.91 -0.02 -1.73 16 42 H 0.16 -2.10 8.06 -2.91 -0.02 -2.13 16 43 H 0.16 -2.02 8.06 -2.91 -0.02 -2.04 16 44 H 0.15 -1.51 8.06 -2.91 -0.02 -1.53 16 45 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 46 H 0.12 -2.46 7.38 -2.39 -0.02 -2.48 16 47 H 0.13 -2.28 7.31 -2.39 -0.02 -2.29 16 48 H 0.19 -3.75 7.79 -2.91 -0.02 -3.77 16 49 H 0.22 -5.38 8.06 -2.91 -0.02 -5.40 16 50 H 0.18 -1.80 7.40 -2.91 -0.02 -1.82 16 51 H 0.18 -2.18 7.40 -2.91 -0.02 -2.20 16 Total: 0.00 -43.00 453.72 9.78 -33.22 By element: Atomic # 1 Polarization: -33.89 SS G_CDS: 1.76 Total: -32.13 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 5.17 Total: 6.36 kcal Atomic # 7 Polarization: 5.45 SS G_CDS: -2.61 Total: 2.84 kcal Atomic # 8 Polarization: 2.80 SS G_CDS: -0.05 Total: 2.75 kcal Atomic # 9 Polarization: -13.14 SS G_CDS: 3.50 Total: -9.64 kcal Atomic # 14 Polarization: -5.41 SS G_CDS: 2.01 Total: -3.40 kcal Total: -43.00 9.78 -33.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_275550_18176238_18164856_13179792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 546.085 kcal (2) G-P(sol) polarization free energy of solvation -43.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 503.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 512.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 48.18 seconds