Wall clock time and date at job start Fri Mar 20 2020 13:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47319 * 2 1 4 4 C 1.53007 * 109.46942 * 240.00977 * 2 1 3 5 5 O 1.42900 * 109.47349 * 57.71225 * 4 2 1 6 6 Si 1.86295 * 109.47154 * 177.71543 * 4 2 1 7 7 H 1.48497 * 109.47113 * 185.72003 * 6 4 2 8 8 H 1.48503 * 109.46947 * 305.71964 * 6 4 2 9 9 H 1.48497 * 109.47428 * 65.71494 * 6 4 2 10 10 N 1.46891 * 109.47617 * 120.00503 * 2 1 3 11 11 C 1.46901 * 111.00290 * 288.69381 * 10 2 1 12 12 C 1.46906 * 111.00051 * 52.64690 * 10 2 1 13 13 C 1.52997 * 109.47183 * 159.58801 * 12 10 2 14 14 C 1.54998 * 113.24082 * 67.34598 * 13 12 10 15 15 C 1.58689 * 103.90751 * 147.20513 * 14 13 12 16 16 N 1.48078 * 105.87713 * 0.35243 * 15 14 13 17 17 H 1.00896 * 111.52409 * 211.66284 * 16 15 14 18 18 C 1.48645 * 106.32440 * 333.46109 * 16 15 14 19 19 C 1.47430 * 108.26374 * 88.60020 * 16 15 14 20 20 C 1.52943 * 109.66974 * 312.39385 * 19 16 15 21 21 C 1.53207 * 110.01732 * 304.40139 * 20 19 16 22 22 H 1.08996 * 109.47423 * 59.99572 * 1 2 3 23 23 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46730 * 299.99153 * 1 2 3 25 25 H 1.09003 * 109.46725 * 297.71243 * 4 2 1 26 26 H 0.96691 * 114.00118 * 180.02562 * 5 4 2 27 27 H 1.08994 * 109.47469 * 192.12325 * 11 10 2 28 28 H 1.09006 * 109.46740 * 72.12548 * 11 10 2 29 29 H 1.08999 * 109.46696 * 312.12829 * 11 10 2 30 30 H 1.08995 * 109.46932 * 279.59256 * 12 10 2 31 31 H 1.09006 * 109.46986 * 39.59042 * 12 10 2 32 32 H 1.08999 * 110.37454 * 265.43155 * 14 13 12 33 33 H 1.08996 * 110.37817 * 27.78909 * 14 13 12 34 34 H 1.08999 * 110.20806 * 241.44666 * 15 14 13 35 35 H 1.09002 * 110.73704 * 119.53628 * 15 14 13 36 36 H 1.09001 * 111.61312 * 283.59569 * 18 16 15 37 37 H 1.09003 * 110.08980 * 159.97224 * 18 16 15 38 38 H 1.08999 * 109.44308 * 192.33024 * 19 16 15 39 39 H 1.08999 * 109.44136 * 72.45055 * 19 16 15 40 40 H 1.08998 * 109.38152 * 184.23233 * 20 19 16 41 41 H 1.09000 * 109.38190 * 64.56530 * 20 19 16 42 42 H 1.09003 * 109.71450 * 294.17389 * 21 20 19 43 43 H 1.09004 * 109.70942 * 173.54467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 1.5202 -0.0790 -2.4155 6 14 3.9016 -0.6607 -1.2849 7 1 4.3913 -1.2371 -2.5628 8 1 4.3533 0.7495 -1.1727 9 1 4.4441 -1.4462 -0.1474 10 7 2.0197 -0.6925 1.1993 11 6 1.7809 0.1109 2.4057 12 6 1.4108 -2.0236 1.3242 13 6 2.2743 -2.8958 2.2376 14 6 2.2837 -2.4160 3.7114 15 6 2.4180 -3.7575 4.5484 16 7 2.4820 -4.8516 3.5526 17 1 2.0677 -5.7002 3.9079 18 6 1.7685 -4.3597 2.3449 19 6 3.8937 -5.0542 3.1787 20 6 4.5429 -3.7045 2.8688 21 6 3.7445 -2.9755 1.7833 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.7104 -1.7599 -1.2293 26 1 1.8027 -0.4844 -3.2466 27 1 2.3361 -0.3147 3.2415 28 1 0.7159 0.1092 2.6383 29 1 2.1132 1.1344 2.2322 30 1 0.4124 -1.9277 1.7509 31 1 1.3421 -2.4856 0.3393 32 1 3.1415 -1.7690 3.8944 33 1 1.3563 -1.8939 3.9464 34 1 1.5475 -3.8891 5.1910 35 1 3.3269 -3.7477 5.1500 36 1 0.6870 -4.3877 2.4783 37 1 2.0679 -4.9388 1.4713 38 1 3.9475 -5.6934 2.2976 39 1 4.4229 -5.5301 4.0043 40 1 5.5632 -3.8653 2.5209 41 1 4.5625 -3.0963 3.7732 42 1 3.8102 -3.5272 0.8455 43 1 4.1422 -1.9697 1.6474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698505114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:29 Heat of formation + Delta-G solvation = 100.720789 kcal Electronic energy + Delta-G solvation = -20389.823509 eV Core-core repulsion = 17669.772785 eV Total energy + Delta-G solvation = -2720.050723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.71809 -41.35708 -38.66482 -37.08655 -35.61368 -33.39069 -32.80107 -29.94921 -28.87786 -28.24814 -26.91079 -25.62484 -24.65402 -22.86128 -22.33444 -21.10862 -20.04272 -19.72629 -18.67139 -18.28070 -18.08176 -17.54720 -17.20823 -16.96567 -16.72307 -16.38011 -16.10428 -15.95116 -15.74540 -15.71805 -15.56735 -15.24885 -14.86627 -14.66877 -14.36289 -14.15526 -14.01515 -13.87553 -13.73844 -13.54842 -13.41251 -13.28901 -13.06909 -12.67240 -12.49714 -11.23985 -10.73134 -1.33751 0.29350 0.35657 0.47285 0.57253 0.61599 0.66210 1.10143 1.17633 1.24820 1.50856 1.61903 1.67901 1.70111 1.80286 1.84913 2.00507 2.07619 2.20155 2.30389 2.35599 2.42789 2.55897 2.62222 2.75369 2.84257 2.90895 2.97755 2.98994 3.04465 3.12934 3.20128 3.27972 3.34710 3.39252 3.46769 3.65162 3.72691 3.77427 3.85902 4.18935 4.60681 4.65679 5.62022 Molecular weight = 243.19amu Principal moments of inertia in cm(-1) A = 0.029214 B = 0.009318 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.203978 B = 3004.283751 C = 3380.025481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 H 0.099 0.901 4 C -0.111 4.111 5 O -0.548 6.548 6 Si 0.949 3.051 7 H -0.268 1.268 8 H -0.254 1.254 9 H -0.239 1.239 10 N -0.532 5.532 11 C 0.009 3.991 12 C 0.065 3.935 13 C -0.070 4.070 14 C -0.130 4.130 15 C -0.012 4.012 16 N -0.392 5.392 17 H 0.431 0.569 18 C 0.002 3.998 19 C -0.005 4.005 20 C -0.149 4.149 21 C -0.127 4.127 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.385 0.615 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -12.248 9.975 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.019 4.019 3 H 0.117 0.883 4 C -0.222 4.222 5 O -0.354 6.354 6 Si 0.772 3.228 7 H -0.192 1.192 8 H -0.177 1.177 9 H -0.163 1.163 10 N -0.256 5.256 11 C -0.139 4.139 12 C -0.064 4.064 13 C -0.071 4.071 14 C -0.167 4.167 15 C -0.134 4.134 16 N 0.030 4.970 17 H 0.268 0.732 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.187 4.187 21 C -0.164 4.164 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.233 0.767 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.649 -11.717 10.297 15.685 hybrid contribution -1.270 -0.705 -0.177 1.463 sum 0.379 -12.422 10.120 16.027 Atomic orbital electron populations 1.22333 0.95474 1.02222 1.03472 1.21414 0.94585 0.98523 0.87358 0.88288 1.25931 1.10767 0.97709 0.87796 1.86402 1.75141 1.58438 1.15373 0.85731 0.74349 0.82330 0.80385 1.19240 1.17730 1.16259 1.61841 1.57946 1.02495 1.03364 1.22780 1.00290 0.98957 0.91850 1.21956 0.94815 0.89942 0.99646 1.22256 0.97763 0.91060 0.96011 1.24044 1.06551 0.94325 0.91781 1.25378 1.08864 0.86944 0.92200 1.46156 1.16688 1.17630 1.16544 0.73246 1.24976 1.01097 0.98470 0.87457 1.24012 0.78531 1.03253 1.06801 1.22219 1.01890 0.92766 1.01804 1.22336 0.91595 1.04631 0.97832 0.90336 0.92621 0.92472 0.92195 0.76689 0.90371 0.94341 0.90437 0.92269 0.88919 0.87107 0.87875 0.85292 0.85027 0.84818 0.84682 0.85485 0.85480 0.87244 0.89191 0.90112 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 2.44 8.35 37.16 0.31 2.75 16 2 C 0.09 -1.31 1.72 -67.71 -0.12 -1.43 16 3 H 0.10 -1.29 7.65 -51.93 -0.40 -1.69 16 4 C -0.11 1.60 2.09 37.16 0.08 1.68 16 5 O -0.55 6.52 12.10 -35.23 -0.43 6.10 16 6 Si 0.95 -12.66 27.42 -169.99 -4.66 -17.32 16 7 H -0.27 3.01 7.11 56.52 0.40 3.41 16 8 H -0.25 2.50 7.11 56.52 0.40 2.90 16 9 H -0.24 3.74 4.72 56.52 0.27 4.01 16 10 N -0.53 9.61 2.72 -234.89 -0.64 8.98 16 11 C 0.01 -0.16 8.23 60.07 0.49 0.34 16 12 C 0.07 -1.38 3.10 -3.82 -0.01 -1.39 16 13 C -0.07 1.74 0.88 -151.70 -0.13 1.60 16 14 C -0.13 3.33 3.77 -22.52 -0.08 3.24 16 15 C -0.01 0.36 6.28 -0.02 0.00 0.36 16 16 N -0.39 12.04 1.07 -226.36 -0.24 11.80 16 17 H 0.43 -14.33 8.80 -39.29 -0.35 -14.68 16 18 C 0.00 -0.06 5.86 -1.66 -0.01 -0.07 16 19 C 0.00 0.13 5.61 -3.56 -0.02 0.11 16 20 C -0.15 3.81 5.52 -26.65 -0.15 3.66 16 21 C -0.13 2.96 4.18 -26.06 -0.11 2.85 16 22 H 0.08 -0.86 7.62 -51.93 -0.40 -1.26 16 23 H 0.05 -0.82 6.73 -51.93 -0.35 -1.17 16 24 H 0.06 -0.78 7.01 -51.92 -0.36 -1.14 16 25 H 0.06 -1.00 6.05 -51.93 -0.31 -1.32 16 26 H 0.39 -5.78 8.74 45.56 0.40 -5.38 16 27 H 0.08 -1.58 4.71 -51.93 -0.24 -1.82 16 28 H 0.04 -0.68 6.98 -51.93 -0.36 -1.04 16 29 H 0.08 -1.24 7.87 -51.93 -0.41 -1.65 16 30 H 0.06 -1.25 7.20 -51.93 -0.37 -1.63 16 31 H 0.09 -1.94 5.84 -51.93 -0.30 -2.24 16 32 H 0.11 -2.71 5.86 -51.93 -0.30 -3.02 16 33 H 0.10 -2.54 7.16 -51.93 -0.37 -2.91 16 34 H 0.13 -3.81 8.14 -51.93 -0.42 -4.23 16 35 H 0.13 -3.83 6.92 -51.93 -0.36 -4.19 16 36 H 0.13 -3.90 8.14 -51.93 -0.42 -4.32 16 37 H 0.14 -3.93 7.56 -51.93 -0.39 -4.32 16 38 H 0.13 -3.71 7.79 -51.93 -0.40 -4.11 16 39 H 0.13 -3.75 8.14 -51.93 -0.42 -4.17 16 40 H 0.11 -2.60 8.14 -51.93 -0.42 -3.03 16 41 H 0.09 -2.30 5.34 -51.93 -0.28 -2.58 16 42 H 0.08 -1.84 8.06 -51.93 -0.42 -2.26 16 43 H 0.11 -2.30 6.00 -51.93 -0.31 -2.61 16 LS Contribution 290.28 15.07 4.37 4.37 Total: 1.00 -30.56 290.28 -8.27 -38.82 By element: Atomic # 1 Polarization: -59.54 SS G_CDS: -6.92 Total: -66.46 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 0.25 Total: 13.71 kcal Atomic # 7 Polarization: 21.65 SS G_CDS: -0.88 Total: 20.77 kcal Atomic # 8 Polarization: 6.52 SS G_CDS: -0.43 Total: 6.10 kcal Atomic # 14 Polarization: -12.66 SS G_CDS: -4.66 Total: -17.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.56 -8.27 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.545 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds