Wall clock time and date at job start Fri Mar 20 2020 13:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47319 * 2 1 4 4 C 1.53007 * 109.46942 * 240.00977 * 2 1 3 5 5 O 1.42900 * 109.47349 * 57.71225 * 4 2 1 6 6 Si 1.86295 * 109.47154 * 177.71543 * 4 2 1 7 7 H 1.48497 * 109.47113 * 185.72003 * 6 4 2 8 8 H 1.48503 * 109.46947 * 305.71964 * 6 4 2 9 9 H 1.48497 * 109.47428 * 65.71494 * 6 4 2 10 10 N 1.46891 * 109.47617 * 120.00503 * 2 1 3 11 11 C 1.46901 * 111.00290 * 288.69381 * 10 2 1 12 12 C 1.46906 * 111.00051 * 52.64690 * 10 2 1 13 13 C 1.52997 * 109.47183 * 159.58801 * 12 10 2 14 14 C 1.54998 * 113.24082 * 67.34598 * 13 12 10 15 15 C 1.58689 * 103.90751 * 147.20513 * 14 13 12 16 16 N 1.48078 * 105.87713 * 0.35243 * 15 14 13 17 17 H 1.00896 * 111.52409 * 211.66284 * 16 15 14 18 18 C 1.48645 * 106.32440 * 333.46109 * 16 15 14 19 19 C 1.47430 * 108.26374 * 88.60020 * 16 15 14 20 20 C 1.52943 * 109.66974 * 312.39385 * 19 16 15 21 21 C 1.53207 * 110.01732 * 304.40139 * 20 19 16 22 22 H 1.08996 * 109.47423 * 59.99572 * 1 2 3 23 23 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46730 * 299.99153 * 1 2 3 25 25 H 1.09003 * 109.46725 * 297.71243 * 4 2 1 26 26 H 0.96691 * 114.00118 * 180.02562 * 5 4 2 27 27 H 1.08994 * 109.47469 * 192.12325 * 11 10 2 28 28 H 1.09006 * 109.46740 * 72.12548 * 11 10 2 29 29 H 1.08999 * 109.46696 * 312.12829 * 11 10 2 30 30 H 1.08995 * 109.46932 * 279.59256 * 12 10 2 31 31 H 1.09006 * 109.46986 * 39.59042 * 12 10 2 32 32 H 1.08999 * 110.37454 * 265.43155 * 14 13 12 33 33 H 1.08996 * 110.37817 * 27.78909 * 14 13 12 34 34 H 1.08999 * 110.20806 * 241.44666 * 15 14 13 35 35 H 1.09002 * 110.73704 * 119.53628 * 15 14 13 36 36 H 1.09001 * 111.61312 * 283.59569 * 18 16 15 37 37 H 1.09003 * 110.08980 * 159.97224 * 18 16 15 38 38 H 1.08999 * 109.44308 * 192.33024 * 19 16 15 39 39 H 1.08999 * 109.44136 * 72.45055 * 19 16 15 40 40 H 1.08998 * 109.38152 * 184.23233 * 20 19 16 41 41 H 1.09000 * 109.38190 * 64.56530 * 20 19 16 42 42 H 1.09003 * 109.71450 * 294.17389 * 21 20 19 43 43 H 1.09004 * 109.70942 * 173.54467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 1.5202 -0.0790 -2.4155 6 14 3.9016 -0.6607 -1.2849 7 1 4.3913 -1.2371 -2.5628 8 1 4.3533 0.7495 -1.1727 9 1 4.4441 -1.4462 -0.1474 10 7 2.0197 -0.6925 1.1993 11 6 1.7809 0.1109 2.4057 12 6 1.4108 -2.0236 1.3242 13 6 2.2743 -2.8958 2.2376 14 6 2.2837 -2.4160 3.7114 15 6 2.4180 -3.7575 4.5484 16 7 2.4820 -4.8516 3.5526 17 1 2.0677 -5.7002 3.9079 18 6 1.7685 -4.3597 2.3449 19 6 3.8937 -5.0542 3.1787 20 6 4.5429 -3.7045 2.8688 21 6 3.7445 -2.9755 1.7833 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.7104 -1.7599 -1.2293 26 1 1.8027 -0.4844 -3.2466 27 1 2.3361 -0.3147 3.2415 28 1 0.7159 0.1092 2.6383 29 1 2.1132 1.1344 2.2322 30 1 0.4124 -1.9277 1.7509 31 1 1.3421 -2.4856 0.3393 32 1 3.1415 -1.7690 3.8944 33 1 1.3563 -1.8939 3.9464 34 1 1.5475 -3.8891 5.1910 35 1 3.3269 -3.7477 5.1500 36 1 0.6870 -4.3877 2.4783 37 1 2.0679 -4.9388 1.4713 38 1 3.9475 -5.6934 2.2976 39 1 4.4229 -5.5301 4.0043 40 1 5.5632 -3.8653 2.5209 41 1 4.5625 -3.0963 3.7732 42 1 3.8102 -3.5272 0.8455 43 1 4.1422 -1.9697 1.6474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698505114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:28 Heat of formation + Delta-G solvation = 79.792024 kcal Electronic energy + Delta-G solvation = -20390.731048 eV Core-core repulsion = 17669.772785 eV Total energy + Delta-G solvation = -2720.958262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.50106 -39.96753 -37.44805 -35.26231 -33.55057 -31.50633 -31.20775 -28.26993 -27.42373 -26.42427 -25.06036 -23.91613 -22.55668 -21.08594 -20.39988 -19.19362 -18.59813 -17.78291 -16.88896 -16.62088 -16.42064 -15.77462 -15.70912 -15.42122 -15.06621 -14.65027 -14.55723 -14.02631 -13.95302 -13.93179 -13.87146 -13.54330 -13.20317 -13.01796 -12.80185 -12.71905 -12.37795 -12.23112 -12.14084 -12.12177 -11.85356 -11.62637 -11.47321 -11.34609 -11.21959 -10.15861 -9.35270 1.03706 1.30809 1.52111 1.57050 2.07182 2.46654 2.69646 2.80110 3.05545 3.39712 3.49302 3.63798 3.73583 3.79223 3.90133 3.92939 3.96492 4.00798 4.12079 4.25345 4.28211 4.34180 4.39560 4.40773 4.48427 4.58165 4.58517 4.66087 4.68355 4.78477 4.82153 4.86452 4.88936 4.97481 5.01158 5.02138 5.11442 5.15587 5.25857 5.32849 5.44955 5.93843 6.05410 6.77135 Molecular weight = 243.19amu Principal moments of inertia in cm(-1) A = 0.029214 B = 0.009318 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.203978 B = 3004.283751 C = 3380.025481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 H 0.069 0.931 4 C -0.101 4.101 5 O -0.574 6.574 6 Si 0.965 3.035 7 H -0.293 1.293 8 H -0.310 1.310 9 H -0.204 1.204 10 N -0.531 5.531 11 C 0.010 3.990 12 C 0.058 3.942 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.001 4.001 16 N -0.371 5.371 17 H 0.451 0.549 18 C 0.012 3.988 19 C 0.005 3.995 20 C -0.149 4.149 21 C -0.130 4.130 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.396 0.604 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -15.568 11.740 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.213 4.213 5 O -0.382 6.382 6 Si 0.794 3.206 7 H -0.219 1.219 8 H -0.237 1.237 9 H -0.126 1.126 10 N -0.256 5.256 11 C -0.137 4.137 12 C -0.070 4.070 13 C -0.070 4.070 14 C -0.175 4.175 15 C -0.123 4.123 16 N 0.047 4.953 17 H 0.292 0.708 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.187 4.187 21 C -0.168 4.168 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.245 0.755 27 H 0.119 0.881 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.851 -15.092 12.087 19.354 hybrid contribution -0.964 0.430 -0.754 1.297 sum -0.113 -14.661 11.333 18.531 Atomic orbital electron populations 1.22259 0.95912 1.02831 1.01817 1.21283 0.94085 0.97659 0.88961 0.91303 1.25879 1.09071 0.99266 0.87122 1.86379 1.75523 1.59647 1.16620 0.85589 0.75882 0.78915 0.80250 1.21918 1.23730 1.12554 1.61869 1.58106 1.03655 1.01959 1.22796 1.00458 0.97883 0.92593 1.22102 0.95720 0.88379 1.00786 1.22036 0.96137 0.93255 0.95555 1.23948 1.05337 0.96250 0.91993 1.25235 1.09925 0.85329 0.91776 1.45903 1.15774 1.18103 1.15492 0.70753 1.24869 1.01951 0.95489 0.88708 1.23870 0.79145 1.00784 1.07912 1.22108 1.00916 0.94798 1.00872 1.22249 0.93011 1.02738 0.98785 0.93316 0.90809 0.92677 0.88981 0.75455 0.88088 0.94439 0.93086 0.91871 0.88874 0.88855 0.88702 0.83767 0.84493 0.83286 0.83488 0.84494 0.84058 0.89272 0.89238 0.90405 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 4.20 8.35 71.98 0.60 4.80 16 2 C 0.09 -2.29 1.72 44.92 0.08 -2.21 16 3 H 0.07 -1.40 7.65 -2.39 -0.02 -1.42 16 4 C -0.10 2.63 2.09 71.98 0.15 2.78 16 5 O -0.57 11.74 12.10 -148.98 -1.80 9.93 16 6 Si 0.97 -21.95 27.42 68.60 1.88 -20.06 16 7 H -0.29 5.45 7.11 99.48 0.71 6.15 16 8 H -0.31 4.07 7.11 99.48 0.71 4.78 16 9 H -0.20 5.81 4.72 99.48 0.47 6.28 16 10 N -0.53 17.66 2.72 -897.04 -2.44 15.22 16 11 C 0.01 -0.33 8.23 127.69 1.05 0.72 16 12 C 0.06 -2.40 3.10 86.30 0.27 -2.13 16 13 C -0.07 3.38 0.88 -50.36 -0.04 3.34 16 14 C -0.14 6.96 3.77 33.32 0.13 7.09 16 15 C 0.00 0.05 6.28 88.12 0.55 0.61 16 16 N -0.37 23.51 1.07 -870.07 -0.93 22.58 16 17 H 0.45 -31.34 8.80 -89.70 -0.79 -32.13 16 18 C 0.01 -0.71 5.86 86.74 0.51 -0.20 16 19 C 0.00 -0.28 5.61 86.18 0.48 0.21 16 20 C -0.15 7.47 5.52 30.64 0.17 7.63 16 21 C -0.13 5.88 4.18 31.03 0.13 6.01 16 22 H 0.05 -0.88 7.62 -2.39 -0.02 -0.89 16 23 H 0.07 -2.10 6.73 -2.39 -0.02 -2.11 16 24 H 0.05 -1.34 7.01 -2.38 -0.02 -1.35 16 25 H 0.09 -2.99 6.05 -2.39 -0.01 -3.00 16 26 H 0.40 -10.68 8.74 -74.06 -0.65 -11.32 16 27 H 0.10 -3.81 4.71 -2.39 -0.01 -3.82 16 28 H 0.04 -1.22 6.98 -2.38 -0.02 -1.24 16 29 H 0.05 -1.38 7.87 -2.39 -0.02 -1.40 16 30 H 0.06 -2.64 7.20 -2.39 -0.02 -2.65 16 31 H 0.09 -3.87 5.84 -2.38 -0.01 -3.88 16 32 H 0.09 -4.37 5.86 -2.39 -0.01 -4.39 16 33 H 0.09 -4.59 7.16 -2.39 -0.02 -4.61 16 34 H 0.14 -8.81 8.14 -2.39 -0.02 -8.83 16 35 H 0.14 -8.11 6.92 -2.39 -0.02 -8.13 16 36 H 0.15 -9.05 8.14 -2.39 -0.02 -9.06 16 37 H 0.15 -8.85 7.56 -2.39 -0.02 -8.86 16 38 H 0.14 -8.22 7.79 -2.39 -0.02 -8.24 16 39 H 0.14 -8.59 8.14 -2.39 -0.02 -8.61 16 40 H 0.09 -4.05 8.14 -2.39 -0.02 -4.07 16 41 H 0.09 -4.46 5.34 -2.39 -0.01 -4.47 16 42 H 0.08 -3.47 8.06 -2.39 -0.02 -3.49 16 43 H 0.08 -2.83 6.00 -2.39 -0.01 -2.84 16 Total: 1.00 -68.16 290.28 0.86 -67.30 By element: Atomic # 1 Polarization: -123.69 SS G_CDS: 0.08 Total: -123.62 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 4.07 Total: 28.65 kcal Atomic # 7 Polarization: 41.17 SS G_CDS: -3.37 Total: 37.80 kcal Atomic # 8 Polarization: 11.74 SS G_CDS: -1.80 Total: 9.93 kcal Atomic # 14 Polarization: -21.95 SS G_CDS: 1.88 Total: -20.06 kcal Total: -68.16 0.86 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.094 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds