Wall clock time and date at job start Fri Mar 20 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46996 * 2 1 4 4 C 1.52999 * 109.47103 * 239.99952 * 2 1 3 5 5 O 1.42898 * 109.47060 * 299.99666 * 4 2 1 6 6 Si 1.86293 * 109.47229 * 59.99929 * 4 2 1 7 7 H 1.48506 * 109.47361 * 59.99670 * 6 4 2 8 8 H 1.48500 * 109.47500 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47300 * 299.99946 * 6 4 2 10 10 N 1.46896 * 109.47285 * 119.99534 * 2 1 3 11 11 H 1.00904 * 109.46747 * 60.00427 * 10 2 1 12 12 C 1.46897 * 109.47396 * 300.00479 * 10 2 1 13 13 C 1.46901 * 109.47365 * 179.97438 * 10 2 1 14 14 C 1.52995 * 109.47380 * 197.76441 * 13 10 2 15 15 C 1.55463 * 113.44339 * 175.88990 * 14 13 10 16 16 C 1.54057 * 104.81737 * 147.42257 * 15 14 13 17 17 N 1.48240 * 106.70203 * 1.06054 * 16 15 14 18 18 C 1.48806 * 105.17044 * 332.51859 * 17 16 15 19 19 C 1.47677 * 108.91231 * 88.17018 * 17 16 15 20 20 C 1.52994 * 109.28520 * 312.91767 * 19 17 16 21 21 C 1.53151 * 110.09013 * 304.78879 * 20 19 17 22 22 H 1.08999 * 109.47408 * 60.00526 * 1 2 3 23 23 H 1.09005 * 109.46996 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46992 * 299.99620 * 1 2 3 25 25 H 1.09001 * 109.46750 * 179.97438 * 4 2 1 26 26 H 0.96696 * 113.99793 * 60.00123 * 5 4 2 27 27 H 1.09001 * 109.47444 * 64.53460 * 12 10 2 28 28 H 1.09007 * 109.47281 * 184.53530 * 12 10 2 29 29 H 1.08993 * 109.47138 * 304.53115 * 12 10 2 30 30 H 1.09007 * 109.46812 * 77.76361 * 13 10 2 31 31 H 1.09000 * 109.47226 * 317.76913 * 13 10 2 32 32 H 1.08999 * 110.31421 * 28.60393 * 15 14 13 33 33 H 1.08997 * 110.48807 * 266.32721 * 15 14 13 34 34 H 1.08999 * 110.01569 * 241.74903 * 16 15 14 35 35 H 1.09006 * 110.01343 * 120.36906 * 16 15 14 36 36 H 1.09009 * 110.92892 * 160.89645 * 18 17 16 37 37 H 1.08991 * 110.93230 * 284.55595 * 18 17 16 38 38 H 1.08999 * 109.50296 * 192.97721 * 19 17 16 39 39 H 1.09000 * 109.53331 * 72.88047 * 19 17 16 40 40 H 1.09003 * 109.36571 * 184.59947 * 20 19 17 41 41 H 1.08997 * 109.36547 * 64.97551 * 20 19 17 42 42 H 1.08998 * 109.63022 * 173.70308 * 21 20 19 43 43 H 1.09000 * 109.63006 * 294.09059 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -2.0685 -1.2492 6 14 1.4190 0.1569 -2.7703 7 1 1.9139 1.5571 -2.7704 8 1 1.9145 -0.5428 -3.9829 9 1 -0.0661 0.1569 -2.7704 10 7 2.0197 -0.6924 1.1994 11 1 1.6834 -1.6437 1.1994 12 6 1.5300 0.0001 2.3989 13 6 3.4887 -0.6929 1.1992 14 6 3.9985 -1.7608 2.1689 15 6 5.5459 -1.9107 2.1661 16 6 5.9068 -2.2991 3.6126 17 7 4.6304 -2.3851 4.3616 18 6 3.7049 -1.4531 3.6621 19 6 4.0895 -3.7529 4.2303 20 6 4.1470 -4.1802 2.7623 21 6 3.4149 -3.1581 1.8878 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1300 -0.7208 -1.2494 26 1 0.5998 -2.1449 -1.2491 27 1 0.4430 -0.0698 2.4405 28 1 1.9582 -0.4646 3.2871 29 1 1.8254 1.0485 2.3592 30 1 3.8524 0.2858 1.5124 31 1 3.8518 -0.9110 0.1948 32 1 6.0172 -0.9651 1.8982 33 1 5.8519 -2.6958 1.4747 34 1 6.5481 -1.5367 4.0546 35 1 6.4120 -3.2649 3.6245 36 1 2.6668 -1.6787 3.9068 37 1 3.9430 -0.4165 3.8998 38 1 3.0552 -3.7698 4.5739 39 1 4.6843 -4.4395 4.8327 40 1 3.6739 -5.1559 2.6511 41 1 5.1879 -4.2471 2.4459 42 1 3.5551 -3.4087 0.8363 43 1 2.3517 -3.1658 2.1275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698505114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:35 Heat of formation + Delta-G solvation = 105.161826 kcal Electronic energy + Delta-G solvation = -20452.451784 eV Core-core repulsion = 17732.593639 eV Total energy + Delta-G solvation = -2719.858145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.43290 -43.04404 -39.88221 -36.27294 -34.76088 -34.46539 -32.10420 -31.93496 -29.09011 -28.73224 -26.66775 -25.39581 -25.03327 -23.05596 -21.98867 -21.27369 -21.13492 -19.72441 -19.14135 -18.86931 -18.58934 -17.99925 -17.70090 -17.12662 -16.90204 -16.62092 -16.22868 -16.11636 -15.93676 -15.90979 -15.37688 -15.28407 -15.21064 -15.10319 -14.96711 -14.73136 -14.21357 -14.02219 -13.80903 -13.75129 -13.62706 -13.38750 -13.25782 -13.09286 -13.00167 -12.62918 -10.95609 -1.50997 -0.68970 -0.12227 -0.04134 0.39192 0.45848 0.63147 0.68234 1.09978 1.15575 1.29566 1.33062 1.37320 1.53645 1.63509 1.73782 1.87147 1.95504 2.08431 2.15567 2.21968 2.34030 2.39653 2.43999 2.46038 2.51192 2.52859 2.63317 2.73614 2.82466 2.91337 2.95558 2.99887 3.10429 3.23251 3.34623 3.44633 3.58329 3.65451 3.75402 3.80725 4.34092 4.39472 4.48890 Molecular weight = 243.19amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.007960 C = 0.007605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.806205 B = 3516.701730 C = 3680.845578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 H 0.151 0.849 4 C -0.153 4.153 5 O -0.535 6.535 6 Si 0.957 3.043 7 H -0.239 1.239 8 H -0.233 1.233 9 H -0.239 1.239 10 N -0.377 5.377 11 H 0.424 0.576 12 C -0.075 4.075 13 C 0.011 3.989 14 C -0.130 4.130 15 C -0.131 4.131 16 C 0.026 3.974 17 N -0.486 5.486 18 C 0.024 3.976 19 C 0.027 3.973 20 C -0.157 4.157 21 C -0.121 4.121 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.136 0.864 26 H 0.387 0.613 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 4.536 -1.080 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.111 4.111 3 H 0.169 0.831 4 C -0.263 4.263 5 O -0.342 6.342 6 Si 0.774 3.226 7 H -0.162 1.162 8 H -0.156 1.156 9 H -0.162 1.162 10 N 0.043 4.957 11 H 0.263 0.737 12 C -0.217 4.217 13 C -0.111 4.111 14 C -0.132 4.132 15 C -0.170 4.170 16 C -0.103 4.103 17 N -0.205 5.205 18 C -0.104 4.104 19 C -0.102 4.102 20 C -0.196 4.196 21 C -0.159 4.159 22 H 0.130 0.870 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.154 0.846 26 H 0.237 0.763 27 H 0.144 0.856 28 H 0.153 0.847 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.205 5.193 -1.165 6.783 hybrid contribution -0.579 -0.707 -0.484 1.034 sum -4.784 4.485 -1.649 6.762 Atomic orbital electron populations 1.22648 0.89452 1.05957 1.07928 1.24302 1.00083 1.01566 0.85109 0.83137 1.26862 1.05756 0.89910 1.03726 1.86639 1.28293 1.22437 1.96790 0.85428 0.81314 0.79664 0.76147 1.16182 1.15570 1.16180 1.45484 1.15893 1.19398 1.14953 0.73745 1.24667 1.06132 1.02855 0.87997 1.23773 0.76261 1.04950 1.06141 1.23041 0.99426 0.94518 0.96264 1.23001 0.90764 1.03584 0.99672 1.23176 0.93120 1.03629 0.90336 1.66422 1.02379 1.05147 1.46598 1.24030 0.97949 0.99804 0.88658 1.22730 1.01699 0.90559 0.95188 1.22239 1.02182 0.99274 0.95867 1.22004 0.98938 0.92851 1.02089 0.87043 0.89509 0.88434 0.84637 0.76335 0.85595 0.84662 0.85574 0.84705 0.84650 0.90148 0.89603 0.89069 0.89777 0.89601 0.88692 0.90241 0.89138 0.90052 0.90253 0.89744 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 5.47 8.09 37.16 0.30 5.77 16 2 C -0.01 0.24 1.36 -67.72 -0.09 0.14 16 3 H 0.15 -4.46 7.94 -51.93 -0.41 -4.87 16 4 C -0.15 3.81 2.16 37.16 0.08 3.89 16 5 O -0.53 12.46 12.21 -35.23 -0.43 12.03 16 6 Si 0.96 -19.49 26.38 -169.99 -4.48 -23.97 16 7 H -0.24 4.52 7.11 56.52 0.40 4.92 16 8 H -0.23 3.74 7.11 56.52 0.40 4.14 16 9 H -0.24 4.70 6.36 56.52 0.36 5.06 16 10 N -0.38 10.93 0.31 -234.89 -0.07 10.86 16 11 H 0.42 -12.34 5.56 -39.29 -0.22 -12.56 16 12 C -0.08 2.20 8.42 60.06 0.51 2.70 16 13 C 0.01 -0.29 4.30 -3.83 -0.02 -0.30 16 14 C -0.13 3.02 0.91 -151.48 -0.14 2.89 16 15 C -0.13 2.60 5.51 -24.87 -0.14 2.46 16 16 C 0.03 -0.43 6.20 -2.53 -0.02 -0.44 16 17 N -0.49 7.99 6.07 -229.00 -1.39 6.60 16 18 C 0.02 -0.51 4.06 -1.57 -0.01 -0.52 16 19 C 0.03 -0.44 5.84 -3.40 -0.02 -0.46 16 20 C -0.16 2.81 5.52 -26.66 -0.15 2.66 16 21 C -0.12 2.63 4.23 -26.13 -0.11 2.52 16 22 H 0.11 -2.79 5.55 -51.93 -0.29 -3.08 16 23 H 0.09 -2.39 6.78 -51.93 -0.35 -2.74 16 24 H 0.10 -2.68 6.38 -51.93 -0.33 -3.02 16 25 H 0.14 -3.52 5.78 -51.93 -0.30 -3.82 16 26 H 0.39 -9.95 6.99 45.56 0.32 -9.63 16 27 H 0.13 -3.75 6.41 -51.93 -0.33 -4.08 16 28 H 0.14 -3.81 3.67 -51.92 -0.19 -4.00 16 29 H 0.13 -3.77 8.06 -51.93 -0.42 -4.18 16 30 H 0.13 -3.84 7.90 -51.92 -0.41 -4.25 16 31 H 0.14 -3.70 5.40 -51.93 -0.28 -3.98 16 32 H 0.08 -1.63 8.03 -51.93 -0.42 -2.05 16 33 H 0.09 -1.62 6.95 -51.93 -0.36 -1.98 16 34 H 0.09 -1.43 8.14 -51.93 -0.42 -1.85 16 35 H 0.08 -1.30 6.94 -51.93 -0.36 -1.66 16 36 H 0.09 -1.96 5.91 -51.92 -0.31 -2.27 16 37 H 0.09 -2.06 8.06 -51.93 -0.42 -2.48 16 38 H 0.08 -1.33 7.87 -51.93 -0.41 -1.74 16 39 H 0.09 -1.31 8.14 -51.93 -0.42 -1.74 16 40 H 0.08 -1.37 8.14 -51.93 -0.42 -1.79 16 41 H 0.08 -1.33 5.37 -51.93 -0.28 -1.61 16 42 H 0.08 -1.79 8.14 -51.93 -0.42 -2.21 16 43 H 0.06 -1.43 6.92 -51.93 -0.36 -1.79 16 LS Contribution 287.20 15.07 4.33 4.33 Total: 1.00 -29.60 287.20 -8.50 -38.10 By element: Atomic # 1 Polarization: -62.61 SS G_CDS: -6.66 Total: -69.27 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 0.20 Total: 21.32 kcal Atomic # 7 Polarization: 18.92 SS G_CDS: -1.46 Total: 17.46 kcal Atomic # 8 Polarization: 12.46 SS G_CDS: -0.43 Total: 12.03 kcal Atomic # 14 Polarization: -19.49 SS G_CDS: -4.48 Total: -23.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.60 -8.50 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.266 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds