Wall clock time and date at job start Fri Mar 20 2020 13:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46996 * 2 1 4 4 C 1.52999 * 109.47103 * 239.99952 * 2 1 3 5 5 O 1.42898 * 109.47060 * 299.99666 * 4 2 1 6 6 Si 1.86293 * 109.47229 * 59.99929 * 4 2 1 7 7 H 1.48506 * 109.47361 * 59.99670 * 6 4 2 8 8 H 1.48500 * 109.47500 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47300 * 299.99946 * 6 4 2 10 10 N 1.46896 * 109.47285 * 119.99534 * 2 1 3 11 11 H 1.00904 * 109.46747 * 60.00427 * 10 2 1 12 12 C 1.46897 * 109.47396 * 300.00479 * 10 2 1 13 13 C 1.46901 * 109.47365 * 179.97438 * 10 2 1 14 14 C 1.52995 * 109.47380 * 197.76441 * 13 10 2 15 15 C 1.55463 * 113.44339 * 175.88990 * 14 13 10 16 16 C 1.54057 * 104.81737 * 147.42257 * 15 14 13 17 17 N 1.48240 * 106.70203 * 1.06054 * 16 15 14 18 18 C 1.48806 * 105.17044 * 332.51859 * 17 16 15 19 19 C 1.47677 * 108.91231 * 88.17018 * 17 16 15 20 20 C 1.52994 * 109.28520 * 312.91767 * 19 17 16 21 21 C 1.53151 * 110.09013 * 304.78879 * 20 19 17 22 22 H 1.08999 * 109.47408 * 60.00526 * 1 2 3 23 23 H 1.09005 * 109.46996 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46992 * 299.99620 * 1 2 3 25 25 H 1.09001 * 109.46750 * 179.97438 * 4 2 1 26 26 H 0.96696 * 113.99793 * 60.00123 * 5 4 2 27 27 H 1.09001 * 109.47444 * 64.53460 * 12 10 2 28 28 H 1.09007 * 109.47281 * 184.53530 * 12 10 2 29 29 H 1.08993 * 109.47138 * 304.53115 * 12 10 2 30 30 H 1.09007 * 109.46812 * 77.76361 * 13 10 2 31 31 H 1.09000 * 109.47226 * 317.76913 * 13 10 2 32 32 H 1.08999 * 110.31421 * 28.60393 * 15 14 13 33 33 H 1.08997 * 110.48807 * 266.32721 * 15 14 13 34 34 H 1.08999 * 110.01569 * 241.74903 * 16 15 14 35 35 H 1.09006 * 110.01343 * 120.36906 * 16 15 14 36 36 H 1.09009 * 110.92892 * 160.89645 * 18 17 16 37 37 H 1.08991 * 110.93230 * 284.55595 * 18 17 16 38 38 H 1.08999 * 109.50296 * 192.97721 * 19 17 16 39 39 H 1.09000 * 109.53331 * 72.88047 * 19 17 16 40 40 H 1.09003 * 109.36571 * 184.59947 * 20 19 17 41 41 H 1.08997 * 109.36547 * 64.97551 * 20 19 17 42 42 H 1.08998 * 109.63022 * 173.70308 * 21 20 19 43 43 H 1.09000 * 109.63006 * 294.09059 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -2.0685 -1.2492 6 14 1.4190 0.1569 -2.7703 7 1 1.9139 1.5571 -2.7704 8 1 1.9145 -0.5428 -3.9829 9 1 -0.0661 0.1569 -2.7704 10 7 2.0197 -0.6924 1.1994 11 1 1.6834 -1.6437 1.1994 12 6 1.5300 0.0001 2.3989 13 6 3.4887 -0.6929 1.1992 14 6 3.9985 -1.7608 2.1689 15 6 5.5459 -1.9107 2.1661 16 6 5.9068 -2.2991 3.6126 17 7 4.6304 -2.3851 4.3616 18 6 3.7049 -1.4531 3.6621 19 6 4.0895 -3.7529 4.2303 20 6 4.1470 -4.1802 2.7623 21 6 3.4149 -3.1581 1.8878 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1300 -0.7208 -1.2494 26 1 0.5998 -2.1449 -1.2491 27 1 0.4430 -0.0698 2.4405 28 1 1.9582 -0.4646 3.2871 29 1 1.8254 1.0485 2.3592 30 1 3.8524 0.2858 1.5124 31 1 3.8518 -0.9110 0.1948 32 1 6.0172 -0.9651 1.8982 33 1 5.8519 -2.6958 1.4747 34 1 6.5481 -1.5367 4.0546 35 1 6.4120 -3.2649 3.6245 36 1 2.6668 -1.6787 3.9068 37 1 3.9430 -0.4165 3.8998 38 1 3.0552 -3.7698 4.5739 39 1 4.6843 -4.4395 4.8327 40 1 3.6739 -5.1559 2.6511 41 1 5.1879 -4.2471 2.4459 42 1 3.5551 -3.4087 0.8363 43 1 2.3517 -3.1658 2.1275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698505114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:33 Heat of formation + Delta-G solvation = 83.325192 kcal Electronic energy + Delta-G solvation = -20453.398692 eV Core-core repulsion = 17732.593639 eV Total energy + Delta-G solvation = -2720.805053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.36400 -41.31600 -37.91443 -34.41390 -33.22603 -32.51936 -30.30256 -29.95703 -27.05891 -26.70295 -24.94590 -23.73963 -22.94651 -21.51284 -20.25869 -19.15445 -19.03306 -17.79744 -17.17988 -16.89045 -16.74051 -16.29000 -15.82996 -15.41078 -15.15567 -14.80349 -14.26877 -14.20128 -14.01249 -13.79920 -13.72064 -13.65673 -13.30755 -13.13961 -12.99385 -12.71351 -12.48033 -12.33048 -12.28048 -12.06860 -11.90490 -11.75925 -11.65292 -11.61684 -11.43291 -10.76564 -9.49551 0.63109 1.16192 1.42968 1.49833 2.02959 2.58883 2.72921 2.89796 2.94803 3.19235 3.23271 3.31119 3.49716 3.59534 3.61696 3.73790 3.94023 3.96330 4.02607 4.07965 4.14366 4.17825 4.27859 4.36743 4.40571 4.50935 4.51404 4.57469 4.62153 4.62847 4.70114 4.73332 4.82846 4.84849 4.90787 4.95938 5.06709 5.07873 5.12300 5.19405 5.20101 5.81694 5.91340 6.45354 Molecular weight = 243.19amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.007960 C = 0.007605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.806205 B = 3516.701730 C = 3680.845578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.006 3.994 3 H 0.178 0.822 4 C -0.122 4.122 5 O -0.548 6.548 6 Si 0.962 3.038 7 H -0.256 1.256 8 H -0.303 1.303 9 H -0.251 1.251 10 N -0.367 5.367 11 H 0.428 0.572 12 C -0.078 4.078 13 C 0.015 3.985 14 C -0.105 4.105 15 C -0.130 4.130 16 C 0.020 3.980 17 N -0.518 5.518 18 C 0.019 3.981 19 C 0.029 3.971 20 C -0.158 4.158 21 C -0.119 4.119 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.156 0.844 26 H 0.396 0.604 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 6.094 -0.619 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.096 4.096 3 H 0.195 0.805 4 C -0.235 4.235 5 O -0.357 6.357 6 Si 0.790 3.210 7 H -0.180 1.180 8 H -0.230 1.230 9 H -0.175 1.175 10 N 0.054 4.946 11 H 0.267 0.733 12 C -0.219 4.219 13 C -0.107 4.107 14 C -0.107 4.107 15 C -0.170 4.170 16 C -0.109 4.109 17 N -0.239 5.239 18 C -0.108 4.108 19 C -0.100 4.100 20 C -0.197 4.197 21 C -0.157 4.157 22 H 0.108 0.892 23 H 0.114 0.886 24 H 0.130 0.870 25 H 0.173 0.827 26 H 0.248 0.752 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.179 0.821 31 H 0.163 0.837 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.538 6.773 -0.711 8.778 hybrid contribution -0.186 -1.212 -0.672 1.398 sum -5.724 5.562 -1.383 8.100 Atomic orbital electron populations 1.22711 0.90021 1.06585 1.07556 1.24084 0.99478 1.02229 0.83788 0.80452 1.26298 1.06447 0.88790 1.02004 1.86621 1.29445 1.22914 1.96695 0.85382 0.80313 0.78499 0.76830 1.17978 1.22961 1.17500 1.45285 1.14849 1.19724 1.14783 0.73327 1.24783 1.06775 1.03524 0.86840 1.23737 0.77114 1.04543 1.05265 1.22759 0.96755 0.94971 0.96199 1.22919 0.93710 1.03572 0.96788 1.23108 0.93249 1.01655 0.92840 1.66356 1.03445 1.05663 1.48421 1.24245 0.98072 0.99138 0.89370 1.22601 1.01133 0.90556 0.95690 1.22190 1.01625 1.00096 0.95798 1.21996 1.00059 0.92474 1.01148 0.89194 0.88599 0.86984 0.82722 0.75176 0.84561 0.85542 0.84048 0.82084 0.83743 0.88991 0.90758 0.90650 0.92505 0.87467 0.87587 0.89596 0.92672 0.91496 0.92151 0.89411 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 11.67 8.09 71.98 0.58 12.25 16 2 C 0.01 -0.37 1.36 44.92 0.06 -0.31 16 3 H 0.18 -11.09 7.94 -2.38 -0.02 -11.11 16 4 C -0.12 6.15 2.16 71.98 0.16 6.31 16 5 O -0.55 25.82 12.21 -148.98 -1.82 24.01 16 6 Si 0.96 -36.73 26.38 68.60 1.81 -34.92 16 7 H -0.26 9.09 7.11 99.48 0.71 9.80 16 8 H -0.30 8.02 7.11 99.48 0.71 8.72 16 9 H -0.25 9.17 6.36 99.48 0.63 9.80 16 10 N -0.37 22.20 0.31 -897.05 -0.28 21.92 16 11 H 0.43 -26.06 5.56 -89.69 -0.50 -26.56 16 12 C -0.08 4.81 8.42 127.69 1.08 5.89 16 13 C 0.02 -0.87 4.30 86.30 0.37 -0.50 16 14 C -0.10 4.93 0.91 -50.22 -0.05 4.88 16 15 C -0.13 5.02 5.51 31.80 0.18 5.20 16 16 C 0.02 -0.60 6.20 86.40 0.54 -0.06 16 17 N -0.52 15.80 6.07 -878.41 -5.33 10.47 16 18 C 0.02 -0.82 4.06 86.71 0.35 -0.47 16 19 C 0.03 -0.85 5.84 86.15 0.50 -0.35 16 20 C -0.16 5.23 5.52 30.64 0.17 5.40 16 21 C -0.12 5.18 4.23 30.98 0.13 5.31 16 22 H 0.09 -4.46 5.55 -2.39 -0.01 -4.47 16 23 H 0.10 -5.42 6.78 -2.38 -0.02 -5.43 16 24 H 0.11 -6.42 6.38 -2.39 -0.02 -6.43 16 25 H 0.16 -8.32 5.78 -2.39 -0.01 -8.34 16 26 H 0.40 -20.52 6.99 -74.06 -0.52 -21.04 16 27 H 0.14 -8.53 6.41 -2.39 -0.02 -8.54 16 28 H 0.13 -7.44 3.67 -2.38 -0.01 -7.45 16 29 H 0.14 -8.98 8.06 -2.39 -0.02 -9.00 16 30 H 0.16 -9.81 7.90 -2.38 -0.02 -9.83 16 31 H 0.14 -8.33 5.40 -2.39 -0.01 -8.34 16 32 H 0.09 -3.73 8.03 -2.39 -0.02 -3.75 16 33 H 0.07 -2.64 6.95 -2.39 -0.02 -2.66 16 34 H 0.08 -2.07 8.14 -2.39 -0.02 -2.09 16 35 H 0.06 -1.44 6.94 -2.38 -0.02 -1.45 16 36 H 0.11 -5.05 5.91 -2.38 -0.01 -5.06 16 37 H 0.11 -4.73 8.06 -2.39 -0.02 -4.75 16 38 H 0.09 -2.71 7.87 -2.39 -0.02 -2.72 16 39 H 0.05 -1.29 8.14 -2.39 -0.02 -1.31 16 40 H 0.07 -2.03 8.14 -2.39 -0.02 -2.05 16 41 H 0.06 -1.77 5.37 -2.39 -0.01 -1.78 16 42 H 0.09 -3.76 8.14 -2.39 -0.02 -3.78 16 43 H 0.09 -4.28 6.92 -2.39 -0.02 -4.30 16 Total: 1.00 -68.03 287.20 -0.89 -68.91 By element: Atomic # 1 Polarization: -134.59 SS G_CDS: 0.67 Total: -133.93 kcal Atomic # 6 Polarization: 39.48 SS G_CDS: 4.07 Total: 43.55 kcal Atomic # 7 Polarization: 38.00 SS G_CDS: -5.61 Total: 32.39 kcal Atomic # 8 Polarization: 25.82 SS G_CDS: -1.82 Total: 24.01 kcal Atomic # 14 Polarization: -36.73 SS G_CDS: 1.81 Total: -34.92 kcal Total: -68.03 -0.89 -68.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.236 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds