Wall clock time and date at job start Fri Mar 20 2020 13:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46852 * 2 1 4 4 C 1.53002 * 109.47186 * 240.00247 * 2 1 3 5 5 O 1.42904 * 109.46965 * 64.99613 * 4 2 1 6 6 Si 1.86305 * 109.47016 * 304.99941 * 4 2 1 7 7 H 1.48499 * 109.47032 * 299.99734 * 6 4 2 8 8 H 1.48500 * 109.47186 * 60.00102 * 6 4 2 9 9 H 1.48501 * 109.46873 * 180.02562 * 6 4 2 10 10 N 1.46897 * 109.47181 * 120.00405 * 2 1 3 11 11 H 1.00900 * 109.47516 * 60.00089 * 10 2 1 12 12 C 1.46909 * 109.47117 * 180.02562 * 10 2 1 13 13 C 1.46901 * 109.46796 * 299.99729 * 10 2 1 14 14 C 1.53008 * 109.47092 * 172.01462 * 13 10 2 15 15 C 1.54991 * 113.20058 * 68.50085 * 14 13 10 16 16 C 1.54058 * 104.76450 * 147.35543 * 15 14 13 17 17 N 1.48236 * 106.69563 * 1.01476 * 16 15 14 18 18 C 1.48806 * 105.17994 * 332.51373 * 17 16 15 19 19 C 1.47672 * 108.91571 * 88.16980 * 17 16 15 20 20 C 1.52992 * 109.28488 * 312.91210 * 19 17 16 21 21 C 1.53152 * 110.08930 * 304.78549 * 20 19 17 22 22 H 1.08996 * 109.46953 * 299.99339 * 1 2 3 23 23 H 1.08998 * 109.47583 * 60.00085 * 1 2 3 24 24 H 1.09003 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47226 * 185.00091 * 4 2 1 26 26 H 0.96700 * 113.99696 * 180.02562 * 5 4 2 27 27 H 1.08999 * 109.46348 * 311.73355 * 12 10 2 28 28 H 1.08995 * 109.47332 * 71.73745 * 12 10 2 29 29 H 1.09001 * 109.46505 * 191.73875 * 12 10 2 30 30 H 1.09000 * 109.46982 * 52.01845 * 13 10 2 31 31 H 1.09004 * 109.47333 * 292.01084 * 13 10 2 32 32 H 1.09010 * 110.37859 * 266.17347 * 15 14 13 33 33 H 1.08995 * 110.38449 * 28.41687 * 15 14 13 34 34 H 1.08998 * 110.01199 * 241.70365 * 16 15 14 35 35 H 1.09003 * 110.01435 * 120.32626 * 16 15 14 36 36 H 1.08993 * 110.93282 * 160.89643 * 18 17 16 37 37 H 1.09001 * 110.93053 * 284.57233 * 18 17 16 38 38 H 1.08996 * 109.50383 * 72.85618 * 19 17 16 39 39 H 1.09001 * 109.50335 * 192.93336 * 19 17 16 40 40 H 1.08997 * 109.37018 * 64.97358 * 20 19 17 41 41 H 1.09003 * 109.36585 * 184.72544 * 20 19 17 42 42 H 1.09013 * 109.63015 * 173.70198 * 21 20 19 43 43 H 1.08995 * 109.63657 * 294.09147 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6619 0.0169 -2.4131 6 14 1.2972 -2.4279 -1.3278 7 1 1.6901 -3.1949 -0.1184 8 1 -0.1828 -2.3214 -1.3873 9 1 1.7927 -3.1281 -2.5400 10 7 2.0197 -0.6926 1.1994 11 1 1.6834 -1.6439 1.1993 12 6 3.4888 -0.6920 1.1996 13 6 1.5300 -0.0001 2.3988 14 6 1.8698 -0.8277 3.6400 15 6 3.3895 -0.8839 3.9392 16 6 3.4848 -0.9590 5.4750 17 7 2.0940 -0.9699 5.9879 18 6 1.2943 -0.2487 4.9610 19 6 1.6155 -2.3658 6.0445 20 6 1.9524 -3.0691 4.7282 21 6 1.3733 -2.2828 3.5484 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1263 -0.7994 -1.2056 26 1 1.9525 -0.3832 -3.2441 27 1 3.8523 -1.0138 0.2237 28 1 3.8517 0.3142 1.4090 29 1 3.8521 -1.3762 1.9664 30 1 0.4494 0.1252 2.3303 31 1 2.0053 0.9781 2.4731 32 1 3.8328 -1.7715 3.4876 33 1 3.8826 0.0153 3.5701 34 1 4.0171 -0.0887 5.8587 35 1 3.9994 -1.8726 5.7727 36 1 0.2340 -0.4815 5.0589 37 1 1.4627 0.8266 5.0207 38 1 2.1035 -2.8846 6.8695 39 1 0.5362 -2.3747 6.1965 40 1 3.0350 -3.1364 4.6211 41 1 1.5267 -4.0725 4.7353 42 1 1.7107 -2.7266 2.6116 43 1 0.2845 -2.3048 3.5927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698505114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:40 Heat of formation + Delta-G solvation = 117.906542 kcal Electronic energy + Delta-G solvation = -20333.057769 eV Core-core repulsion = 17613.752276 eV Total energy + Delta-G solvation = -2719.305493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.56115 -43.06126 -39.77096 -36.25230 -34.89350 -34.56496 -32.83677 -31.09086 -29.26680 -28.54698 -26.66244 -25.75093 -24.81481 -23.22584 -22.02458 -21.45093 -20.96116 -19.68014 -19.20331 -18.96059 -18.72190 -18.04184 -17.47202 -17.09542 -16.87684 -16.68665 -16.54583 -16.25701 -15.94401 -15.75967 -15.56180 -15.37862 -15.25527 -15.11006 -14.92598 -14.76446 -14.29784 -14.08862 -13.97501 -13.76222 -13.60795 -13.52984 -13.28821 -13.15450 -13.08784 -12.34385 -10.97404 -1.59375 -0.99308 -0.63922 -0.33435 0.17518 0.27990 0.43450 0.60121 1.07882 1.14313 1.23060 1.43337 1.47309 1.67023 1.72360 1.81620 1.84153 1.86877 2.03944 2.07421 2.14167 2.22820 2.29593 2.39267 2.45184 2.51391 2.56305 2.64811 2.74017 2.80072 2.86818 2.91618 3.05691 3.18054 3.24787 3.28898 3.35584 3.51156 3.54520 3.65405 3.79141 4.35447 4.50548 4.65303 Molecular weight = 243.19amu Principal moments of inertia in cm(-1) A = 0.037240 B = 0.007815 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.693854 B = 3581.818256 C = 3706.261384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 H 0.155 0.845 4 C -0.132 4.132 5 O -0.528 6.528 6 Si 0.890 3.110 7 H -0.249 1.249 8 H -0.221 1.221 9 H -0.221 1.221 10 N -0.387 5.387 11 H 0.415 0.585 12 C -0.078 4.078 13 C 0.012 3.988 14 C -0.133 4.133 15 C -0.156 4.156 16 C 0.027 3.973 17 N -0.487 5.487 18 C 0.051 3.949 19 C 0.028 3.972 20 C -0.157 4.157 21 C -0.124 4.124 22 H 0.091 0.909 23 H 0.121 0.879 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.404 0.596 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 1.170 -4.719 5.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.070 4.070 3 H 0.173 0.827 4 C -0.244 4.244 5 O -0.336 6.336 6 Si 0.710 3.290 7 H -0.174 1.174 8 H -0.143 1.143 9 H -0.142 1.142 10 N 0.031 4.969 11 H 0.254 0.746 12 C -0.219 4.219 13 C -0.109 4.109 14 C -0.135 4.135 15 C -0.195 4.195 16 C -0.101 4.101 17 N -0.206 5.206 18 C -0.079 4.079 19 C -0.101 4.101 20 C -0.196 4.196 21 C -0.162 4.162 22 H 0.109 0.891 23 H 0.139 0.861 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.255 0.745 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.951 1.228 -3.740 4.049 hybrid contribution 0.524 -0.805 -1.402 1.700 sum 1.475 0.423 -5.142 5.366 Atomic orbital electron populations 1.22642 0.89121 1.05577 1.07686 1.23053 0.99944 1.01266 0.82778 0.82691 1.26195 1.03820 1.06052 0.88288 1.86401 1.80803 1.51153 1.15237 0.86424 0.83929 0.73764 0.84917 1.17356 1.14342 1.14224 1.45741 1.16734 1.19101 1.15309 0.74582 1.24812 0.76045 1.10828 1.10215 1.23840 1.06136 0.99227 0.81682 1.23044 0.98310 0.96692 0.95455 1.23525 0.93283 1.02860 0.99814 1.23149 0.91701 1.04241 0.91039 1.66378 1.02055 1.11951 1.40199 1.23585 0.99026 1.00199 0.85061 1.22719 1.02149 0.88454 0.96756 1.22249 1.02104 1.00428 0.94774 1.22073 1.02519 0.92520 0.99054 0.89081 0.86089 0.90148 0.89341 0.74485 0.85639 0.85010 0.84499 0.84165 0.84185 0.89979 0.89851 0.88995 0.89901 0.88865 0.88612 0.89180 0.89769 0.90638 0.89938 0.92783 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 4.72 8.20 37.16 0.30 5.03 16 2 C 0.03 -0.83 1.79 -67.71 -0.12 -0.95 16 3 H 0.16 -4.23 8.14 -51.93 -0.42 -4.65 16 4 C -0.13 3.19 2.31 37.16 0.09 3.27 16 5 O -0.53 11.05 12.41 -35.23 -0.44 10.62 16 6 Si 0.89 -19.08 24.56 -169.99 -4.18 -23.25 16 7 H -0.25 5.68 6.56 56.52 0.37 6.05 16 8 H -0.22 4.28 6.38 56.52 0.36 4.64 16 9 H -0.22 4.00 7.11 56.52 0.40 4.40 16 10 N -0.39 10.87 0.22 -234.87 -0.05 10.82 16 11 H 0.41 -11.64 3.68 -39.29 -0.14 -11.78 16 12 C -0.08 2.23 7.81 60.07 0.47 2.70 16 13 C 0.01 -0.34 4.16 -3.82 -0.02 -0.36 16 14 C -0.13 3.15 0.84 -151.71 -0.13 3.02 16 15 C -0.16 3.55 3.52 -25.13 -0.09 3.46 16 16 C 0.03 -0.48 6.20 -2.53 -0.02 -0.50 16 17 N -0.49 7.92 6.06 -229.00 -1.39 6.53 16 18 C 0.05 -1.01 5.97 -1.55 -0.01 -1.01 16 19 C 0.03 -0.45 5.84 -3.40 -0.02 -0.47 16 20 C -0.16 2.95 5.52 -26.66 -0.15 2.80 16 21 C -0.12 2.77 4.70 -26.12 -0.12 2.64 16 22 H 0.09 -2.35 6.12 -51.93 -0.32 -2.67 16 23 H 0.12 -2.66 7.82 -51.93 -0.41 -3.07 16 24 H 0.08 -1.93 5.34 -51.93 -0.28 -2.21 16 25 H 0.09 -2.35 5.63 -51.93 -0.29 -2.64 16 26 H 0.40 -9.31 8.74 45.56 0.40 -8.91 16 27 H 0.13 -3.66 5.50 -51.93 -0.29 -3.95 16 28 H 0.13 -3.88 7.47 -51.93 -0.39 -4.27 16 29 H 0.14 -3.88 4.55 -51.93 -0.24 -4.11 16 30 H 0.14 -3.97 5.74 -51.93 -0.30 -4.26 16 31 H 0.14 -4.03 7.86 -51.93 -0.41 -4.44 16 32 H 0.08 -1.94 5.18 -51.92 -0.27 -2.21 16 33 H 0.08 -2.01 7.04 -51.93 -0.37 -2.38 16 34 H 0.09 -1.54 8.14 -51.93 -0.42 -1.96 16 35 H 0.08 -1.41 6.94 -51.93 -0.36 -1.77 16 36 H 0.09 -1.82 7.70 -51.93 -0.40 -2.22 16 37 H 0.10 -1.89 8.14 -51.93 -0.42 -2.32 16 38 H 0.09 -1.33 8.14 -51.93 -0.42 -1.75 16 39 H 0.08 -1.34 7.87 -51.93 -0.41 -1.75 16 40 H 0.08 -1.42 5.37 -51.93 -0.28 -1.70 16 41 H 0.08 -1.46 8.14 -51.93 -0.42 -1.88 16 42 H 0.05 -1.31 6.34 -51.92 -0.33 -1.64 16 43 H 0.09 -1.89 8.07 -51.93 -0.42 -2.31 16 LS Contribution 283.86 15.07 4.28 4.28 Total: 1.00 -29.04 283.86 -8.05 -37.09 By element: Atomic # 1 Polarization: -59.25 SS G_CDS: -6.47 Total: -65.72 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 0.19 Total: 19.64 kcal Atomic # 7 Polarization: 18.79 SS G_CDS: -1.44 Total: 17.35 kcal Atomic # 8 Polarization: 11.05 SS G_CDS: -0.44 Total: 10.62 kcal Atomic # 14 Polarization: -19.08 SS G_CDS: -4.18 Total: -23.25 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.04 -8.05 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.993 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds