Wall clock time and date at job start Fri Mar 20 2020 13:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46852 * 2 1 4 4 C 1.53002 * 109.47186 * 240.00247 * 2 1 3 5 5 O 1.42904 * 109.46965 * 64.99613 * 4 2 1 6 6 Si 1.86305 * 109.47016 * 304.99941 * 4 2 1 7 7 H 1.48499 * 109.47032 * 299.99734 * 6 4 2 8 8 H 1.48500 * 109.47186 * 60.00102 * 6 4 2 9 9 H 1.48501 * 109.46873 * 180.02562 * 6 4 2 10 10 N 1.46897 * 109.47181 * 120.00405 * 2 1 3 11 11 H 1.00900 * 109.47516 * 60.00089 * 10 2 1 12 12 C 1.46909 * 109.47117 * 180.02562 * 10 2 1 13 13 C 1.46901 * 109.46796 * 299.99729 * 10 2 1 14 14 C 1.53008 * 109.47092 * 172.01462 * 13 10 2 15 15 C 1.54991 * 113.20058 * 68.50085 * 14 13 10 16 16 C 1.54058 * 104.76450 * 147.35543 * 15 14 13 17 17 N 1.48236 * 106.69563 * 1.01476 * 16 15 14 18 18 C 1.48806 * 105.17994 * 332.51373 * 17 16 15 19 19 C 1.47672 * 108.91571 * 88.16980 * 17 16 15 20 20 C 1.52992 * 109.28488 * 312.91210 * 19 17 16 21 21 C 1.53152 * 110.08930 * 304.78549 * 20 19 17 22 22 H 1.08996 * 109.46953 * 299.99339 * 1 2 3 23 23 H 1.08998 * 109.47583 * 60.00085 * 1 2 3 24 24 H 1.09003 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47226 * 185.00091 * 4 2 1 26 26 H 0.96700 * 113.99696 * 180.02562 * 5 4 2 27 27 H 1.08999 * 109.46348 * 311.73355 * 12 10 2 28 28 H 1.08995 * 109.47332 * 71.73745 * 12 10 2 29 29 H 1.09001 * 109.46505 * 191.73875 * 12 10 2 30 30 H 1.09000 * 109.46982 * 52.01845 * 13 10 2 31 31 H 1.09004 * 109.47333 * 292.01084 * 13 10 2 32 32 H 1.09010 * 110.37859 * 266.17347 * 15 14 13 33 33 H 1.08995 * 110.38449 * 28.41687 * 15 14 13 34 34 H 1.08998 * 110.01199 * 241.70365 * 16 15 14 35 35 H 1.09003 * 110.01435 * 120.32626 * 16 15 14 36 36 H 1.08993 * 110.93282 * 160.89643 * 18 17 16 37 37 H 1.09001 * 110.93053 * 284.57233 * 18 17 16 38 38 H 1.08996 * 109.50383 * 72.85618 * 19 17 16 39 39 H 1.09001 * 109.50335 * 192.93336 * 19 17 16 40 40 H 1.08997 * 109.37018 * 64.97358 * 20 19 17 41 41 H 1.09003 * 109.36585 * 184.72544 * 20 19 17 42 42 H 1.09013 * 109.63015 * 173.70198 * 21 20 19 43 43 H 1.08995 * 109.63657 * 294.09147 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6619 0.0169 -2.4131 6 14 1.2972 -2.4279 -1.3278 7 1 1.6901 -3.1949 -0.1184 8 1 -0.1828 -2.3214 -1.3873 9 1 1.7927 -3.1281 -2.5400 10 7 2.0197 -0.6926 1.1994 11 1 1.6834 -1.6439 1.1993 12 6 3.4888 -0.6920 1.1996 13 6 1.5300 -0.0001 2.3988 14 6 1.8698 -0.8277 3.6400 15 6 3.3895 -0.8839 3.9392 16 6 3.4848 -0.9590 5.4750 17 7 2.0940 -0.9699 5.9879 18 6 1.2943 -0.2487 4.9610 19 6 1.6155 -2.3658 6.0445 20 6 1.9524 -3.0691 4.7282 21 6 1.3733 -2.2828 3.5484 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1263 -0.7994 -1.2056 26 1 1.9525 -0.3832 -3.2441 27 1 3.8523 -1.0138 0.2237 28 1 3.8517 0.3142 1.4090 29 1 3.8521 -1.3762 1.9664 30 1 0.4494 0.1252 2.3303 31 1 2.0053 0.9781 2.4731 32 1 3.8328 -1.7715 3.4876 33 1 3.8826 0.0153 3.5701 34 1 4.0171 -0.0887 5.8587 35 1 3.9994 -1.8726 5.7727 36 1 0.2340 -0.4815 5.0589 37 1 1.4627 0.8266 5.0207 38 1 2.1035 -2.8846 6.8695 39 1 0.5362 -2.3747 6.1965 40 1 3.0350 -3.1364 4.6211 41 1 1.5267 -4.0725 4.7353 42 1 1.7107 -2.7266 2.6116 43 1 0.2845 -2.3048 3.5927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698505114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:39 Heat of formation + Delta-G solvation = 96.246474 kcal Electronic energy + Delta-G solvation = -20333.997020 eV Core-core repulsion = 17613.752276 eV Total energy + Delta-G solvation = -2720.244744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.50465 -41.32934 -37.93137 -34.44810 -33.28125 -32.59473 -31.02835 -29.22002 -27.18752 -26.64752 -24.91166 -23.93123 -22.93030 -21.62007 -20.30461 -19.39345 -18.90604 -17.74121 -17.24002 -17.00648 -16.93696 -16.36472 -15.56024 -15.32159 -15.15471 -14.91443 -14.72193 -14.27276 -13.96600 -13.85452 -13.65127 -13.54150 -13.45105 -13.33162 -13.05681 -12.91594 -12.67882 -12.44496 -12.14339 -12.01648 -11.90179 -11.80290 -11.64093 -11.60194 -11.41675 -10.48482 -9.49702 0.58941 0.80209 1.06518 1.31173 1.89822 2.37947 2.57764 2.84071 2.89730 3.08791 3.20881 3.43459 3.46803 3.57997 3.66736 3.79660 3.87283 3.96495 3.98511 3.99478 4.05286 4.15210 4.26419 4.29077 4.38596 4.39124 4.48186 4.51683 4.61447 4.63576 4.68421 4.70441 4.75059 4.88566 4.93043 4.95061 4.98007 5.08323 5.12324 5.16350 5.22911 5.85105 5.92765 6.53499 Molecular weight = 243.19amu Principal moments of inertia in cm(-1) A = 0.037240 B = 0.007815 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.693854 B = 3581.818256 C = 3706.261384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.047 3.953 3 H 0.180 0.820 4 C -0.113 4.113 5 O -0.551 6.551 6 Si 0.888 3.112 7 H -0.219 1.219 8 H -0.261 1.261 9 H -0.276 1.276 10 N -0.380 5.380 11 H 0.415 0.585 12 C -0.090 4.090 13 C 0.019 3.981 14 C -0.107 4.107 15 C -0.150 4.150 16 C 0.018 3.982 17 N -0.525 5.525 18 C 0.042 3.958 19 C 0.028 3.972 20 C -0.156 4.156 21 C -0.127 4.127 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.125 0.875 26 H 0.409 0.591 27 H 0.135 0.865 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 2.770 -5.863 7.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.055 4.055 3 H 0.198 0.802 4 C -0.227 4.227 5 O -0.361 6.361 6 Si 0.714 3.286 7 H -0.142 1.142 8 H -0.185 1.185 9 H -0.201 1.201 10 N 0.038 4.962 11 H 0.254 0.746 12 C -0.230 4.230 13 C -0.102 4.102 14 C -0.109 4.109 15 C -0.188 4.188 16 C -0.110 4.110 17 N -0.246 5.246 18 C -0.087 4.087 19 C -0.101 4.101 20 C -0.195 4.195 21 C -0.164 4.164 22 H 0.129 0.871 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.142 0.858 26 H 0.261 0.739 27 H 0.153 0.847 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.061 2.803 -4.861 5.978 hybrid contribution 0.122 -1.396 -1.007 1.726 sum 2.183 1.407 -5.868 6.417 Atomic orbital electron populations 1.22670 0.90953 1.05016 1.07416 1.22847 0.98413 1.02154 0.82038 0.80247 1.26023 1.05411 1.02857 0.88375 1.86373 1.81433 1.51844 1.16411 0.86567 0.81460 0.76936 0.83632 1.14185 1.18548 1.20107 1.45600 1.17416 1.18858 1.14286 0.74581 1.25055 0.74997 1.12162 1.10832 1.23834 1.07373 0.99246 0.79745 1.22725 0.96998 0.95770 0.95444 1.23553 0.94331 1.05094 0.95860 1.23161 0.90583 1.02382 0.94921 1.66310 1.03467 1.11800 1.42975 1.23594 0.98347 1.00066 0.86647 1.22576 1.00900 0.89199 0.97444 1.22187 1.02328 0.99912 0.95038 1.22101 1.02437 0.93325 0.98567 0.87115 0.88720 0.90992 0.85780 0.73911 0.84691 0.83090 0.84589 0.82998 0.81431 0.88411 0.87044 0.90674 0.91927 0.89643 0.88339 0.92304 0.90989 0.90494 0.91491 0.89740 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 9.94 8.20 71.98 0.59 10.53 16 2 C 0.05 -2.58 1.79 44.92 0.08 -2.50 16 3 H 0.18 -10.44 8.14 -2.39 -0.02 -10.46 16 4 C -0.11 5.53 2.31 71.98 0.17 5.70 16 5 O -0.55 22.82 12.41 -148.98 -1.85 20.97 16 6 Si 0.89 -36.46 24.56 68.60 1.68 -34.78 16 7 H -0.22 10.09 6.56 99.48 0.65 10.74 16 8 H -0.26 9.08 6.38 99.48 0.63 9.72 16 9 H -0.28 8.82 7.11 99.48 0.71 9.52 16 10 N -0.38 22.28 0.22 -897.00 -0.19 22.09 16 11 H 0.42 -24.14 3.68 -89.69 -0.33 -24.48 16 12 C -0.09 5.46 7.81 127.69 1.00 6.46 16 13 C 0.02 -1.09 4.16 86.31 0.36 -0.73 16 14 C -0.11 5.16 0.84 -50.37 -0.04 5.11 16 15 C -0.15 6.91 3.52 31.63 0.11 7.02 16 16 C 0.02 -0.59 6.20 86.40 0.54 -0.06 16 17 N -0.53 15.41 6.06 -878.42 -5.33 10.09 16 18 C 0.04 -1.62 5.97 86.72 0.52 -1.10 16 19 C 0.03 -0.78 5.84 86.15 0.50 -0.28 16 20 C -0.16 5.48 5.52 30.64 0.17 5.65 16 21 C -0.13 5.63 4.70 30.99 0.15 5.78 16 22 H 0.11 -5.85 6.12 -2.39 -0.01 -5.87 16 23 H 0.09 -4.02 7.82 -2.39 -0.02 -4.03 16 24 H 0.07 -3.36 5.34 -2.39 -0.01 -3.37 16 25 H 0.12 -6.89 5.63 -2.39 -0.01 -6.90 16 26 H 0.41 -18.25 8.74 -74.06 -0.65 -18.90 16 27 H 0.14 -8.35 5.50 -2.39 -0.01 -8.36 16 28 H 0.15 -9.58 7.47 -2.39 -0.02 -9.59 16 29 H 0.14 -8.11 4.55 -2.39 -0.01 -8.12 16 30 H 0.15 -8.95 5.74 -2.39 -0.01 -8.97 16 31 H 0.17 -10.35 7.86 -2.38 -0.02 -10.37 16 32 H 0.10 -4.75 5.18 -2.38 -0.01 -4.76 16 33 H 0.11 -5.68 7.04 -2.39 -0.02 -5.70 16 34 H 0.07 -2.31 8.14 -2.39 -0.02 -2.33 16 35 H 0.06 -1.88 6.94 -2.39 -0.02 -1.90 16 36 H 0.09 -3.15 7.70 -2.39 -0.02 -3.17 16 37 H 0.10 -3.83 8.14 -2.39 -0.02 -3.85 16 38 H 0.06 -1.38 8.14 -2.39 -0.02 -1.40 16 39 H 0.07 -1.95 7.87 -2.39 -0.02 -1.97 16 40 H 0.08 -2.73 5.37 -2.39 -0.01 -2.75 16 41 H 0.07 -2.15 8.14 -2.39 -0.02 -2.17 16 42 H 0.08 -4.23 6.34 -2.38 -0.02 -4.25 16 43 H 0.08 -3.68 8.07 -2.39 -0.02 -3.69 16 Total: 1.00 -66.53 283.86 -0.89 -67.42 By element: Atomic # 1 Polarization: -128.02 SS G_CDS: 0.66 Total: -127.37 kcal Atomic # 6 Polarization: 37.44 SS G_CDS: 4.13 Total: 41.58 kcal Atomic # 7 Polarization: 37.69 SS G_CDS: -5.52 Total: 32.17 kcal Atomic # 8 Polarization: 22.82 SS G_CDS: -1.85 Total: 20.97 kcal Atomic # 14 Polarization: -36.46 SS G_CDS: 1.68 Total: -34.78 kcal Total: -66.53 -0.89 -67.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.666 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds