Wall clock time and date at job start Fri Mar 20 2020 13:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46644 * 2 1 4 4 C 1.52994 * 109.47223 * 239.99797 * 2 1 3 5 5 O 1.42897 * 109.47194 * 65.50448 * 4 2 1 6 6 Si 1.86299 * 109.47330 * 305.49780 * 4 2 1 7 7 H 1.48496 * 109.46895 * 300.00544 * 6 4 2 8 8 H 1.48495 * 109.46775 * 60.00182 * 6 4 2 9 9 H 1.48494 * 109.47258 * 180.02562 * 6 4 2 10 10 N 1.46894 * 109.47122 * 119.99344 * 2 1 3 11 11 H 1.00906 * 109.47220 * 66.32507 * 10 2 1 12 12 C 1.46906 * 109.47609 * 306.32720 * 10 2 1 13 13 C 1.46897 * 109.47374 * 186.32238 * 10 2 1 14 14 C 1.52998 * 109.47514 * 212.73478 * 13 10 2 15 15 C 1.55006 * 113.24182 * 64.53383 * 14 13 10 16 16 C 1.54034 * 104.77544 * 147.49891 * 15 14 13 17 17 N 1.48052 * 106.79870 * 0.34266 * 16 15 14 18 18 H 1.00898 * 111.48816 * 211.39674 * 17 16 15 19 19 C 1.48569 * 105.53025 * 333.55001 * 17 16 15 20 20 C 1.47431 * 108.27255 * 88.34436 * 17 16 15 21 21 C 1.52943 * 109.64132 * 313.30494 * 20 17 16 22 22 C 1.53201 * 110.02186 * 304.42515 * 21 20 17 23 23 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47420 * 300.00420 * 1 2 3 25 25 H 1.09007 * 109.46868 * 60.00533 * 1 2 3 26 26 H 1.09008 * 109.46680 * 185.49911 * 4 2 1 27 27 H 0.96705 * 113.99952 * 180.02562 * 5 4 2 28 28 H 1.09007 * 109.46869 * 63.70855 * 12 10 2 29 29 H 1.08993 * 109.47225 * 183.71026 * 12 10 2 30 30 H 1.08994 * 109.46682 * 303.71514 * 12 10 2 31 31 H 1.09005 * 109.46815 * 92.73726 * 13 10 2 32 32 H 1.08994 * 109.47065 * 332.73822 * 13 10 2 33 33 H 1.08997 * 110.37554 * 266.32973 * 15 14 13 34 34 H 1.08996 * 110.37145 * 28.67400 * 15 14 13 35 35 H 1.09003 * 109.98376 * 119.68102 * 16 15 14 36 36 H 1.08992 * 109.98574 * 240.99282 * 16 15 14 37 37 H 1.09003 * 110.86501 * 283.57357 * 19 17 16 38 38 H 1.08997 * 110.86190 * 159.92386 * 19 17 16 39 39 H 1.08998 * 109.43761 * 193.26931 * 20 17 16 40 40 H 1.08997 * 109.43905 * 73.34716 * 20 17 16 41 41 H 1.09003 * 109.37462 * 64.59503 * 21 20 17 42 42 H 1.08995 * 109.37716 * 184.36413 * 21 20 17 43 43 H 1.09003 * 109.71324 * 173.54537 * 22 21 20 44 44 H 1.09002 * 109.71434 * 294.13348 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6721 0.0228 -2.4124 6 14 1.2854 -2.4224 -1.3356 7 1 1.6678 -3.1955 -0.1268 8 1 -0.1934 -2.3051 -1.4009 9 1 1.7809 -3.1227 -2.5477 10 7 2.0196 -0.6923 1.1995 11 1 1.7716 -1.6691 1.1489 12 6 1.4093 -0.0935 2.3941 13 6 3.4806 -0.5617 1.2782 14 6 4.0712 -1.8182 1.9211 15 6 3.8559 -3.0979 1.0734 16 6 5.0973 -3.9665 1.3511 17 7 5.9430 -3.2121 2.3037 18 1 6.9229 -3.4068 2.1624 19 6 5.6152 -1.7805 2.0792 20 6 5.5153 -3.5540 3.6726 21 6 3.9902 -3.4875 3.7663 22 6 3.4970 -2.1069 3.3215 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.1256 -0.8073 -1.2012 27 1 1.9633 -0.3770 -3.2434 28 1 0.3307 -0.2487 2.3676 29 1 1.8221 -0.5628 3.2870 30 1 1.6222 0.9753 2.4138 31 1 3.7355 0.3094 1.8819 32 1 3.8891 -0.4405 0.2750 33 1 2.9512 -3.6160 1.3914 34 1 3.7978 -2.8463 0.0145 35 1 4.7959 -4.9169 1.7918 36 1 5.6441 -4.1417 0.4247 37 1 6.0894 -1.4117 1.1697 38 1 5.9025 -1.1769 2.9401 39 1 5.9531 -2.8465 4.3767 40 1 5.8500 -4.5623 3.9160 41 1 3.5546 -4.2519 3.1228 42 1 3.6832 -3.6647 4.7971 43 1 2.4078 -2.1012 3.2806 44 1 3.8424 -1.3490 4.0247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698505114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:44 Heat of formation + Delta-G solvation = 266.747671 kcal Electronic energy + Delta-G solvation = -20896.464422 eV Core-core repulsion = 18169.957426 eV Total energy + Delta-G solvation = -2726.506996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.202 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.93538 -46.02250 -41.01619 -39.50211 -37.53730 -36.23038 -35.17685 -33.63776 -30.67102 -30.25151 -29.57467 -28.53510 -26.43812 -26.28623 -24.65107 -23.80839 -22.57391 -22.00693 -21.75092 -21.04941 -20.39048 -20.34635 -20.05025 -19.50301 -19.00232 -18.79366 -18.39945 -18.13157 -17.96783 -17.80843 -17.53570 -17.47425 -17.32395 -17.17936 -16.84750 -16.68801 -16.53202 -16.27831 -15.98954 -15.92792 -15.57654 -15.47759 -15.44235 -15.08540 -15.00647 -14.56340 -13.45139 -3.06791 -2.83230 -2.17357 -1.92197 -1.48788 -1.43425 -1.32308 -1.12297 -1.00394 -0.84190 -0.79533 -0.76431 -0.59516 -0.45694 -0.35549 -0.26981 -0.16829 -0.01118 0.03992 0.10701 0.13691 0.29543 0.33340 0.40029 0.44931 0.54884 0.55972 0.60351 0.69772 0.71682 0.77136 0.85298 0.88725 0.89517 0.91498 1.03438 1.07416 1.09236 1.25896 1.43040 1.53602 1.62966 1.63355 2.31816 3.62899 Molecular weight = 244.20amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.009588 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.897324 B = 2919.497501 C = 3259.019048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 H 0.162 0.838 4 C -0.131 4.131 5 O -0.522 6.522 6 Si 0.883 3.117 7 H -0.250 1.250 8 H -0.216 1.216 9 H -0.217 1.217 10 N -0.387 5.387 11 H 0.415 0.585 12 C -0.068 4.068 13 C 0.002 3.998 14 C -0.113 4.113 15 C -0.165 4.165 16 C -0.003 4.003 17 N -0.391 5.391 18 H 0.446 0.554 19 C 0.016 3.984 20 C -0.010 4.010 21 C -0.149 4.149 22 C -0.147 4.147 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.408 0.592 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -1.775 7.023 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.072 4.072 3 H 0.179 0.821 4 C -0.243 4.243 5 O -0.331 6.331 6 Si 0.703 3.297 7 H -0.175 1.175 8 H -0.138 1.138 9 H -0.138 1.138 10 N 0.032 4.968 11 H 0.253 0.747 12 C -0.208 4.208 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.203 4.203 16 C -0.125 4.125 17 N 0.028 4.972 18 H 0.285 0.715 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.186 4.186 22 C -0.184 4.184 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.144 0.856 26 H 0.098 0.902 27 H 0.260 0.740 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.112 0.888 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.369 -1.937 7.437 10.648 hybrid contribution 0.799 -0.441 -0.560 1.071 sum 8.169 -2.379 6.877 10.940 Atomic orbital electron populations 1.22705 0.88245 1.05842 1.08529 1.23271 1.00718 1.01175 0.82006 0.82091 1.26167 1.03048 1.06208 0.88844 1.86469 1.81116 1.50260 1.15252 0.86593 0.85406 0.73203 0.84470 1.17532 1.13823 1.13827 1.45691 1.14765 1.19406 1.16974 0.74744 1.24669 1.05190 1.05259 0.85725 1.23762 0.77708 1.01371 1.09142 1.22665 0.95808 0.94485 0.98453 1.23604 0.99829 0.94180 1.02646 1.24395 0.93256 0.98542 0.96287 1.46181 1.19136 1.15251 1.16587 0.71475 1.24719 0.95092 0.80635 1.10214 1.24135 0.99783 1.08933 0.80252 1.22176 0.91356 0.97482 1.07596 1.22620 1.02742 0.99707 0.93328 0.89995 0.88549 0.85638 0.90186 0.73995 0.84389 0.84971 0.84431 0.82578 0.83308 0.86255 0.87448 0.83854 0.83897 0.83636 0.83100 0.84488 0.84168 0.88575 0.85676 0.88770 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 7.29 7.99 37.16 0.30 7.59 16 2 C 0.03 -1.20 1.77 -67.72 -0.12 -1.32 16 3 H 0.16 -6.69 8.09 -51.92 -0.42 -7.11 16 4 C -0.13 5.07 2.42 37.15 0.09 5.16 16 5 O -0.52 17.41 12.43 -35.23 -0.44 16.97 16 6 Si 0.88 -31.63 22.78 -169.99 -3.87 -35.50 16 7 H -0.25 10.04 4.41 56.52 0.25 10.29 16 8 H -0.22 6.83 6.38 56.52 0.36 7.19 16 9 H -0.22 6.88 7.11 56.52 0.40 7.28 16 10 N -0.39 17.57 0.20 -234.90 -0.05 17.52 16 11 H 0.41 -19.06 4.08 -39.29 -0.16 -19.22 16 12 C -0.07 3.06 7.78 60.07 0.47 3.53 16 13 C 0.00 -0.10 4.33 -3.83 -0.02 -0.12 16 14 C -0.11 5.36 0.77 -151.69 -0.12 5.25 16 15 C -0.17 7.60 3.47 -25.13 -0.09 7.51 16 16 C 0.00 0.16 6.08 -2.65 -0.02 0.15 16 17 N -0.39 18.74 1.09 -229.64 -0.25 18.49 16 18 H 0.45 -21.83 8.82 -39.29 -0.35 -22.18 16 19 C 0.02 -0.77 5.86 -1.71 -0.01 -0.78 16 20 C -0.01 0.45 5.64 -3.56 -0.02 0.43 16 21 C -0.15 6.56 5.52 -26.66 -0.15 6.41 16 22 C -0.15 6.76 3.76 -26.06 -0.10 6.66 16 23 H 0.08 -3.01 5.33 -51.93 -0.28 -3.29 16 24 H 0.10 -3.68 6.29 -51.93 -0.33 -4.01 16 25 H 0.13 -4.19 7.84 -51.93 -0.41 -4.60 16 26 H 0.08 -3.42 5.89 -51.92 -0.31 -3.73 16 27 H 0.41 -14.28 8.74 45.56 0.40 -13.88 16 28 H 0.14 -6.04 6.29 -51.93 -0.33 -6.36 16 29 H 0.13 -6.12 5.03 -51.93 -0.26 -6.38 16 30 H 0.14 -6.17 8.07 -51.93 -0.42 -6.59 16 31 H 0.16 -7.60 7.65 -51.93 -0.40 -7.99 16 32 H 0.15 -7.15 5.63 -51.93 -0.29 -7.44 16 33 H 0.12 -5.43 5.96 -51.93 -0.31 -5.74 16 34 H 0.11 -4.94 6.19 -51.93 -0.32 -5.26 16 35 H 0.14 -6.53 6.85 -51.93 -0.36 -6.89 16 36 H 0.14 -6.61 8.14 -51.93 -0.42 -7.04 16 37 H 0.15 -7.11 8.14 -51.93 -0.42 -7.54 16 38 H 0.15 -7.31 7.63 -51.93 -0.40 -7.70 16 39 H 0.14 -6.23 7.82 -51.93 -0.41 -6.64 16 40 H 0.14 -6.24 8.14 -51.93 -0.42 -6.66 16 41 H 0.10 -4.22 5.31 -51.93 -0.28 -4.50 16 42 H 0.13 -5.18 8.14 -51.93 -0.42 -5.60 16 43 H 0.09 -4.34 5.43 -51.93 -0.28 -4.63 16 44 H 0.11 -4.97 8.06 -51.93 -0.42 -5.39 16 LS Contribution 283.38 15.07 4.27 4.27 Total: 2.00 -92.29 283.38 -7.10 -99.39 By element: Atomic # 1 Polarization: -154.62 SS G_CDS: -6.99 Total: -161.60 kcal Atomic # 6 Polarization: 40.24 SS G_CDS: 0.22 Total: 40.46 kcal Atomic # 7 Polarization: 36.31 SS G_CDS: -0.30 Total: 36.01 kcal Atomic # 8 Polarization: 17.41 SS G_CDS: -0.44 Total: 16.97 kcal Atomic # 14 Polarization: -31.63 SS G_CDS: -3.87 Total: -35.50 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -92.29 -7.10 -99.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 366.141 kcal (2) G-P(sol) polarization free energy of solvation -92.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 273.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 266.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds