Wall clock time and date at job start Fri Mar 20 2020 13:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46644 * 2 1 4 4 C 1.52994 * 109.47223 * 239.99797 * 2 1 3 5 5 O 1.42897 * 109.47194 * 65.50448 * 4 2 1 6 6 Si 1.86299 * 109.47330 * 305.49780 * 4 2 1 7 7 H 1.48496 * 109.46895 * 300.00544 * 6 4 2 8 8 H 1.48495 * 109.46775 * 60.00182 * 6 4 2 9 9 H 1.48494 * 109.47258 * 180.02562 * 6 4 2 10 10 N 1.46894 * 109.47122 * 119.99344 * 2 1 3 11 11 H 1.00906 * 109.47220 * 66.32507 * 10 2 1 12 12 C 1.46906 * 109.47609 * 306.32720 * 10 2 1 13 13 C 1.46897 * 109.47374 * 186.32238 * 10 2 1 14 14 C 1.52998 * 109.47514 * 212.73478 * 13 10 2 15 15 C 1.55006 * 113.24182 * 64.53383 * 14 13 10 16 16 C 1.54034 * 104.77544 * 147.49891 * 15 14 13 17 17 N 1.48052 * 106.79870 * 0.34266 * 16 15 14 18 18 H 1.00898 * 111.48816 * 211.39674 * 17 16 15 19 19 C 1.48569 * 105.53025 * 333.55001 * 17 16 15 20 20 C 1.47431 * 108.27255 * 88.34436 * 17 16 15 21 21 C 1.52943 * 109.64132 * 313.30494 * 20 17 16 22 22 C 1.53201 * 110.02186 * 304.42515 * 21 20 17 23 23 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47420 * 300.00420 * 1 2 3 25 25 H 1.09007 * 109.46868 * 60.00533 * 1 2 3 26 26 H 1.09008 * 109.46680 * 185.49911 * 4 2 1 27 27 H 0.96705 * 113.99952 * 180.02562 * 5 4 2 28 28 H 1.09007 * 109.46869 * 63.70855 * 12 10 2 29 29 H 1.08993 * 109.47225 * 183.71026 * 12 10 2 30 30 H 1.08994 * 109.46682 * 303.71514 * 12 10 2 31 31 H 1.09005 * 109.46815 * 92.73726 * 13 10 2 32 32 H 1.08994 * 109.47065 * 332.73822 * 13 10 2 33 33 H 1.08997 * 110.37554 * 266.32973 * 15 14 13 34 34 H 1.08996 * 110.37145 * 28.67400 * 15 14 13 35 35 H 1.09003 * 109.98376 * 119.68102 * 16 15 14 36 36 H 1.08992 * 109.98574 * 240.99282 * 16 15 14 37 37 H 1.09003 * 110.86501 * 283.57357 * 19 17 16 38 38 H 1.08997 * 110.86190 * 159.92386 * 19 17 16 39 39 H 1.08998 * 109.43761 * 193.26931 * 20 17 16 40 40 H 1.08997 * 109.43905 * 73.34716 * 20 17 16 41 41 H 1.09003 * 109.37462 * 64.59503 * 21 20 17 42 42 H 1.08995 * 109.37716 * 184.36413 * 21 20 17 43 43 H 1.09003 * 109.71324 * 173.54537 * 22 21 20 44 44 H 1.09002 * 109.71434 * 294.13348 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6721 0.0228 -2.4124 6 14 1.2854 -2.4224 -1.3356 7 1 1.6678 -3.1955 -0.1268 8 1 -0.1934 -2.3051 -1.4009 9 1 1.7809 -3.1227 -2.5477 10 7 2.0196 -0.6923 1.1995 11 1 1.7716 -1.6691 1.1489 12 6 1.4093 -0.0935 2.3941 13 6 3.4806 -0.5617 1.2782 14 6 4.0712 -1.8182 1.9211 15 6 3.8559 -3.0979 1.0734 16 6 5.0973 -3.9665 1.3511 17 7 5.9430 -3.2121 2.3037 18 1 6.9229 -3.4068 2.1624 19 6 5.6152 -1.7805 2.0792 20 6 5.5153 -3.5540 3.6726 21 6 3.9902 -3.4875 3.7663 22 6 3.4970 -2.1069 3.3215 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.1256 -0.8073 -1.2012 27 1 1.9633 -0.3770 -3.2434 28 1 0.3307 -0.2487 2.3676 29 1 1.8221 -0.5628 3.2870 30 1 1.6222 0.9753 2.4138 31 1 3.7355 0.3094 1.8819 32 1 3.8891 -0.4405 0.2750 33 1 2.9512 -3.6160 1.3914 34 1 3.7978 -2.8463 0.0145 35 1 4.7959 -4.9169 1.7918 36 1 5.6441 -4.1417 0.4247 37 1 6.0894 -1.4117 1.1697 38 1 5.9025 -1.1769 2.9401 39 1 5.9531 -2.8465 4.3767 40 1 5.8500 -4.5623 3.9160 41 1 3.5546 -4.2519 3.1228 42 1 3.6832 -3.6647 4.7971 43 1 2.4078 -2.1012 3.2806 44 1 3.8424 -1.3490 4.0247 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698505114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:44 Heat of formation + Delta-G solvation = 188.894518 kcal Electronic energy + Delta-G solvation = -20899.840388 eV Core-core repulsion = 18169.957426 eV Total energy + Delta-G solvation = -2729.882962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.202 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.23939 -42.48027 -38.06391 -35.91950 -33.90956 -32.95513 -31.47800 -30.11893 -27.24339 -26.55060 -26.21575 -24.85079 -23.12205 -22.61177 -20.92899 -20.13976 -19.34005 -18.56676 -18.04660 -17.54181 -17.14068 -16.90817 -16.58609 -15.83377 -15.62981 -15.39391 -15.00795 -14.85298 -14.44635 -14.20746 -14.08984 -13.87917 -13.83774 -13.70308 -13.46291 -13.41217 -13.17967 -12.88857 -12.57501 -12.33301 -12.27142 -12.07048 -11.92889 -11.86578 -11.78319 -11.67045 -10.52355 0.47518 0.65923 0.91608 0.95164 1.28042 1.98547 2.22806 2.27077 2.52976 2.60757 2.73040 2.91365 3.07068 3.10662 3.33170 3.38749 3.45456 3.47620 3.50773 3.61205 3.73370 3.79727 3.93062 3.95385 4.09268 4.12003 4.19257 4.22707 4.26701 4.34179 4.45253 4.48892 4.50551 4.52604 4.54765 4.62439 4.64186 4.66959 4.73649 4.77092 4.91341 5.03200 5.13464 5.18958 6.49032 Molecular weight = 244.20amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.009588 C = 0.008589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.897324 B = 2919.497501 C = 3259.019048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.181 0.819 4 C -0.115 4.115 5 O -0.558 6.558 6 Si 0.874 3.126 7 H -0.179 1.179 8 H -0.289 1.289 9 H -0.277 1.277 10 N -0.378 5.378 11 H 0.418 0.582 12 C -0.073 4.073 13 C -0.003 4.003 14 C -0.095 4.095 15 C -0.182 4.182 16 C -0.004 4.004 17 N -0.377 5.377 18 H 0.454 0.546 19 C 0.016 3.984 20 C -0.004 4.004 21 C -0.154 4.154 22 C -0.149 4.149 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.409 0.591 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.181 0.819 32 H 0.165 0.835 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.664 -0.506 8.315 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.054 4.054 3 H 0.198 0.802 4 C -0.228 4.228 5 O -0.368 6.368 6 Si 0.702 3.298 7 H -0.101 1.101 8 H -0.215 1.215 9 H -0.202 1.202 10 N 0.041 4.959 11 H 0.256 0.744 12 C -0.213 4.213 13 C -0.124 4.124 14 C -0.096 4.096 15 C -0.219 4.219 16 C -0.126 4.126 17 N 0.041 4.959 18 H 0.295 0.705 19 C -0.106 4.106 20 C -0.126 4.126 21 C -0.192 4.192 22 C -0.186 4.186 23 H 0.089 0.911 24 H 0.128 0.872 25 H 0.101 0.899 26 H 0.155 0.845 27 H 0.262 0.738 28 H 0.140 0.860 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.198 0.802 32 H 0.183 0.817 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.934 -0.703 8.775 13.273 hybrid contribution -0.097 -0.958 -0.990 1.381 sum 9.836 -1.661 7.786 12.654 Atomic orbital electron populations 1.22670 0.91982 1.04804 1.07099 1.22844 0.97765 1.02264 0.82480 0.80218 1.26098 1.05898 1.02601 0.88207 1.86430 1.82034 1.51511 1.16792 0.86949 0.80764 0.77226 0.84910 1.10137 1.21542 1.20222 1.45497 1.16217 1.19080 1.15085 0.74425 1.24775 1.04509 1.06016 0.86050 1.24078 0.75614 1.02074 1.10607 1.22461 0.96448 0.93784 0.96882 1.23720 0.99722 0.95107 1.03358 1.24308 0.93527 0.98257 0.96466 1.46004 1.19364 1.15593 1.14901 0.70516 1.24875 0.94203 0.80011 1.11478 1.23908 0.98768 1.08281 0.81650 1.22121 0.92545 0.98932 1.05583 1.22633 1.03014 0.98429 0.94522 0.91071 0.87225 0.89939 0.84450 0.73813 0.86016 0.83250 0.83708 0.80176 0.81729 0.86961 0.86767 0.85184 0.83577 0.81889 0.82262 0.84174 0.85699 0.89023 0.88930 0.88570 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 14.50 7.99 71.98 0.58 15.07 16 2 C 0.05 -3.91 1.77 44.91 0.08 -3.83 16 3 H 0.18 -14.90 8.09 -2.38 -0.02 -14.92 16 4 C -0.11 8.59 2.42 71.98 0.17 8.77 16 5 O -0.56 35.06 12.43 -148.98 -1.85 33.21 16 6 Si 0.87 -58.26 22.78 68.60 1.56 -56.69 16 7 H -0.18 14.01 4.41 99.48 0.44 14.45 16 8 H -0.29 15.74 6.38 99.48 0.64 16.37 16 9 H -0.28 15.64 7.11 99.48 0.71 16.35 16 10 N -0.38 33.96 0.20 -897.07 -0.18 33.78 16 11 H 0.42 -37.84 4.08 -89.69 -0.37 -38.20 16 12 C -0.07 6.51 7.78 127.69 0.99 7.50 16 13 C 0.00 0.31 4.33 86.30 0.37 0.68 16 14 C -0.09 8.96 0.77 -50.36 -0.04 8.92 16 15 C -0.18 16.50 3.47 31.63 0.11 16.61 16 16 C 0.00 0.34 6.08 86.43 0.53 0.86 16 17 N -0.38 35.61 1.09 -880.46 -0.96 34.64 16 18 H 0.45 -43.85 8.82 -89.70 -0.79 -44.64 16 19 C 0.02 -1.56 5.86 86.75 0.51 -1.05 16 20 C 0.00 0.36 5.64 86.18 0.49 0.84 16 21 C -0.15 13.10 5.52 30.64 0.17 13.27 16 22 C -0.15 13.49 3.76 31.03 0.12 13.61 16 23 H 0.07 -4.79 5.33 -2.38 -0.01 -4.80 16 24 H 0.11 -7.95 6.29 -2.39 -0.02 -7.97 16 25 H 0.08 -4.94 7.84 -2.38 -0.02 -4.96 16 26 H 0.14 -11.84 5.89 -2.38 -0.01 -11.86 16 27 H 0.41 -26.80 8.74 -74.05 -0.65 -27.44 16 28 H 0.12 -10.32 6.29 -2.38 -0.01 -10.34 16 29 H 0.15 -13.76 5.03 -2.39 -0.01 -13.77 16 30 H 0.14 -12.96 8.07 -2.39 -0.02 -12.98 16 31 H 0.18 -17.93 7.65 -2.38 -0.02 -17.95 16 32 H 0.17 -16.20 5.63 -2.39 -0.01 -16.22 16 33 H 0.11 -10.01 5.96 -2.39 -0.01 -10.03 16 34 H 0.11 -10.49 6.19 -2.39 -0.01 -10.50 16 35 H 0.13 -11.41 6.85 -2.39 -0.02 -11.43 16 36 H 0.15 -13.29 8.14 -2.39 -0.02 -13.31 16 37 H 0.16 -16.18 8.14 -2.39 -0.02 -16.20 16 38 H 0.16 -15.53 7.63 -2.39 -0.02 -15.55 16 39 H 0.14 -12.45 7.82 -2.39 -0.02 -12.46 16 40 H 0.12 -10.63 8.14 -2.39 -0.02 -10.65 16 41 H 0.09 -7.71 5.31 -2.39 -0.01 -7.72 16 42 H 0.09 -7.22 8.14 -2.39 -0.02 -7.24 16 43 H 0.10 -8.73 5.43 -2.39 -0.01 -8.74 16 44 H 0.11 -10.40 8.06 -2.39 -0.02 -10.42 16 Total: 2.00 -189.20 283.38 2.25 -186.94 By element: Atomic # 1 Polarization: -312.74 SS G_CDS: -0.39 Total: -313.13 kcal Atomic # 6 Polarization: 77.17 SS G_CDS: 4.07 Total: 81.25 kcal Atomic # 7 Polarization: 69.57 SS G_CDS: -1.14 Total: 68.43 kcal Atomic # 8 Polarization: 35.06 SS G_CDS: -1.85 Total: 33.21 kcal Atomic # 14 Polarization: -58.26 SS G_CDS: 1.56 Total: -56.69 kcal Total: -189.20 2.25 -186.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 375.839 kcal (2) G-P(sol) polarization free energy of solvation -189.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -186.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds