Wall clock time and date at job start Fri Mar 20 2020 13:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47273 * 2 1 4 4 C 1.53004 * 109.46606 * 239.99783 * 2 1 3 5 5 O 1.42897 * 109.47244 * 299.99945 * 4 2 1 6 6 Si 1.86295 * 109.46938 * 60.00556 * 4 2 1 7 7 H 1.48495 * 109.47750 * 59.99453 * 6 4 2 8 8 H 1.48506 * 109.46915 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46911 * 299.99423 * 6 4 2 10 10 N 1.46902 * 109.46785 * 120.00070 * 2 1 3 11 11 H 1.00904 * 109.47062 * 60.00549 * 10 2 1 12 12 C 1.46908 * 109.46886 * 179.97438 * 10 2 1 13 13 C 1.46892 * 109.47574 * 299.99498 * 10 2 1 14 14 C 1.52995 * 109.47588 * 172.43838 * 13 10 2 15 15 C 1.55001 * 113.97062 * 68.91263 * 14 13 10 16 16 C 1.53943 * 104.77611 * 147.01485 * 15 14 13 17 17 N 1.48070 * 106.83186 * 0.31886 * 16 15 14 18 18 H 1.00899 * 112.30559 * 211.92507 * 17 16 15 19 19 C 1.48575 * 105.50851 * 333.57665 * 17 16 15 20 20 C 1.47438 * 108.25736 * 88.35415 * 17 16 15 21 21 C 1.52938 * 109.63775 * 313.34300 * 20 17 16 22 22 C 1.53208 * 110.02231 * 304.42551 * 21 20 17 23 23 H 1.09001 * 109.46535 * 299.99835 * 1 2 3 24 24 H 1.08991 * 109.47179 * 59.99660 * 1 2 3 25 25 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46684 * 180.02562 * 4 2 1 27 27 H 0.96701 * 113.99664 * 60.00394 * 5 4 2 28 28 H 1.09003 * 109.46207 * 70.86100 * 12 10 2 29 29 H 1.08990 * 109.47002 * 190.85469 * 12 10 2 30 30 H 1.08998 * 109.46861 * 310.86189 * 12 10 2 31 31 H 1.09006 * 109.47212 * 52.44067 * 13 10 2 32 32 H 1.08997 * 109.47120 * 292.44506 * 13 10 2 33 33 H 1.08997 * 110.38087 * 265.83046 * 15 14 13 34 34 H 1.09007 * 110.37459 * 28.18137 * 15 14 13 35 35 H 1.09001 * 109.94257 * 241.00366 * 16 15 14 36 36 H 1.08997 * 110.06728 * 119.71057 * 16 15 14 37 37 H 1.08997 * 110.86292 * 283.54347 * 19 17 16 38 38 H 1.08999 * 110.86286 * 159.89250 * 19 17 16 39 39 H 1.09003 * 109.43589 * 193.30337 * 20 17 16 40 40 H 1.08993 * 109.43624 * 73.38672 * 20 17 16 41 41 H 1.09004 * 109.38122 * 64.58793 * 21 20 17 42 42 H 1.08999 * 109.38320 * 184.36415 * 21 20 17 43 43 H 1.09008 * 109.71204 * 173.54716 * 22 21 20 44 44 H 1.09002 * 109.71192 * 294.13543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5636 -2.0686 -1.2492 6 14 1.4190 0.1570 -2.7703 7 1 1.9140 1.5570 -2.7704 8 1 1.9144 -0.5428 -3.9829 9 1 -0.0660 0.1570 -2.7703 10 7 2.0197 -0.6925 1.1995 11 1 1.6833 -1.6439 1.1994 12 6 3.4887 -0.6931 1.1992 13 6 1.5301 -0.0001 2.3989 14 6 1.8791 -0.8225 3.6409 15 6 3.3956 -0.8725 3.9574 16 6 3.4742 -0.9387 5.4934 17 7 2.0809 -0.9339 5.9945 18 1 1.9974 -0.4760 6.8897 19 6 1.2856 -0.2373 4.9506 20 6 1.6066 -2.3287 6.0541 21 6 1.9627 -3.0486 4.7526 22 6 1.3914 -2.2817 3.5556 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 -0.7217 -1.2491 27 1 0.5996 -2.1448 -1.2492 28 1 3.8523 0.3162 1.3926 29 1 3.8519 -1.3653 1.9764 30 1 3.8517 -1.0303 0.2283 31 1 0.4485 0.1186 2.3339 32 1 1.9997 0.9811 2.4690 33 1 3.8465 -1.7611 3.5158 34 1 3.8898 0.0272 3.5904 35 1 4.0107 -0.0705 5.8760 36 1 3.9784 -1.8541 5.8030 37 1 1.4407 0.8404 4.9992 38 1 0.2274 -0.4826 5.0406 39 1 0.5251 -2.3386 6.1900 40 1 2.0821 -2.8380 6.8922 41 1 3.0469 -3.1105 4.6584 42 1 1.5431 -4.0545 4.7692 43 1 1.7430 -2.7333 2.6279 44 1 0.3022 -2.3084 3.5877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698505114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:49 Heat of formation + Delta-G solvation = 259.163769 kcal Electronic energy + Delta-G solvation = -20686.312430 eV Core-core repulsion = 17959.476571 eV Total energy + Delta-G solvation = -2726.835859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.202 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.91386 -45.95677 -41.26985 -39.18466 -37.46355 -36.22821 -35.57661 -33.15323 -31.02995 -30.35149 -29.69654 -28.13956 -26.52566 -26.09687 -24.57318 -23.67612 -22.56103 -22.22680 -21.63869 -21.05038 -20.37108 -20.13193 -19.97250 -19.48052 -18.96606 -18.78714 -18.42183 -18.16695 -17.80719 -17.71761 -17.50700 -17.47691 -17.23157 -17.19411 -16.93286 -16.59540 -16.25560 -16.05155 -16.03217 -15.87001 -15.76867 -15.45112 -15.39913 -15.03748 -14.56761 -14.23536 -13.60558 -2.98138 -2.78990 -1.63859 -1.42006 -1.27462 -1.07303 -0.92542 -0.87982 -0.85191 -0.75195 -0.70400 -0.46629 -0.35991 -0.30835 -0.26632 -0.17034 -0.13425 -0.01161 0.06000 0.07323 0.16968 0.24659 0.30486 0.34876 0.43586 0.46130 0.53157 0.57075 0.60642 0.72436 0.77625 0.83700 0.90776 0.92029 0.99443 1.03356 1.13140 1.22626 1.25268 1.36764 1.45503 1.46663 1.65724 1.92059 3.42973 Molecular weight = 244.20amu Principal moments of inertia in cm(-1) A = 0.043554 B = 0.006902 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.722298 B = 4055.866872 C = 4069.983577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.009 4.009 3 H 0.156 0.844 4 C -0.152 4.152 5 O -0.535 6.535 6 Si 0.953 3.047 7 H -0.237 1.237 8 H -0.228 1.228 9 H -0.237 1.237 10 N -0.378 5.378 11 H 0.426 0.574 12 C -0.076 4.076 13 C 0.007 3.993 14 C -0.109 4.109 15 C -0.153 4.153 16 C -0.006 4.006 17 N -0.391 5.391 18 H 0.445 0.555 19 C 0.011 3.989 20 C -0.010 4.010 21 C -0.147 4.147 22 C -0.141 4.141 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.388 0.612 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 1.770 13.669 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.110 4.110 3 H 0.173 0.827 4 C -0.261 4.261 5 O -0.342 6.342 6 Si 0.769 3.231 7 H -0.160 1.160 8 H -0.150 1.150 9 H -0.160 1.160 10 N 0.042 4.958 11 H 0.265 0.735 12 C -0.217 4.217 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.190 4.190 16 C -0.128 4.128 17 N 0.029 4.971 18 H 0.284 0.716 19 C -0.111 4.111 20 C -0.131 4.131 21 C -0.184 4.184 22 C -0.179 4.179 23 H 0.113 0.887 24 H 0.137 0.863 25 H 0.108 0.892 26 H 0.158 0.842 27 H 0.239 0.761 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.172 2.184 12.777 13.015 hybrid contribution -0.463 -0.290 0.869 1.027 sum 0.708 1.894 13.646 13.795 Atomic orbital electron populations 1.22723 0.89184 1.06229 1.08206 1.24477 1.00237 1.01792 0.84490 0.82676 1.26854 1.06011 0.89956 1.03255 1.86659 1.28518 1.22322 1.96710 0.85463 0.81446 0.79862 0.76333 1.15952 1.15039 1.16019 1.45522 1.16603 1.19467 1.14243 0.73476 1.24740 0.75850 1.09888 1.11237 1.23666 1.07217 0.98957 0.81747 1.22598 0.96900 0.97631 0.93916 1.23535 0.94222 1.07564 0.93718 1.24448 0.80518 1.10931 0.96856 1.46176 1.15783 1.17003 1.18142 0.71611 1.24765 0.99741 1.01744 0.84867 1.24124 1.06199 0.78673 1.04100 1.22141 1.04202 1.01934 0.90136 1.22380 1.04080 0.90727 1.00682 0.88730 0.86343 0.89200 0.84214 0.76129 0.85272 0.85257 0.84572 0.83284 0.83527 0.86372 0.86632 0.84088 0.84057 0.83743 0.83378 0.84621 0.84218 0.88527 0.85773 0.89282 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 8.41 8.12 37.16 0.30 8.71 16 2 C -0.01 0.37 1.37 -67.71 -0.09 0.27 16 3 H 0.16 -6.80 7.96 -51.93 -0.41 -7.21 16 4 C -0.15 5.66 2.13 37.16 0.08 5.74 16 5 O -0.53 18.95 12.21 -35.23 -0.43 18.52 16 6 Si 0.95 -29.15 26.38 -169.99 -4.48 -33.63 16 7 H -0.24 6.83 7.11 56.52 0.40 7.23 16 8 H -0.23 5.74 7.11 56.52 0.40 6.14 16 9 H -0.24 7.04 6.36 56.52 0.36 7.40 16 10 N -0.38 17.51 0.29 -234.89 -0.07 17.44 16 11 H 0.43 -19.95 5.55 -39.29 -0.22 -20.17 16 12 C -0.08 3.47 7.82 60.07 0.47 3.94 16 13 C 0.01 -0.32 4.13 -3.83 -0.02 -0.33 16 14 C -0.11 5.25 0.83 -151.70 -0.13 5.13 16 15 C -0.15 7.24 3.53 -25.18 -0.09 7.15 16 16 C -0.01 0.30 6.09 -2.69 -0.02 0.28 16 17 N -0.39 18.72 1.09 -229.68 -0.25 18.47 16 18 H 0.44 -21.69 8.82 -39.29 -0.35 -22.03 16 19 C 0.01 -0.55 5.81 -1.71 -0.01 -0.56 16 20 C -0.01 0.45 5.64 -3.56 -0.02 0.43 16 21 C -0.15 6.45 5.52 -26.66 -0.15 6.31 16 22 C -0.14 6.49 4.69 -26.06 -0.12 6.37 16 23 H 0.09 -4.01 6.13 -51.93 -0.32 -4.33 16 24 H 0.12 -4.40 5.55 -51.93 -0.29 -4.69 16 25 H 0.09 -3.71 6.78 -51.93 -0.35 -4.06 16 26 H 0.14 -5.40 5.89 -51.93 -0.31 -5.71 16 27 H 0.39 -14.64 6.99 45.56 0.32 -14.32 16 28 H 0.13 -6.00 7.57 -51.93 -0.39 -6.39 16 29 H 0.13 -6.06 4.55 -51.93 -0.24 -6.29 16 30 H 0.14 -5.88 5.62 -51.93 -0.29 -6.17 16 31 H 0.15 -7.25 5.76 -51.93 -0.30 -7.55 16 32 H 0.15 -7.21 7.89 -51.93 -0.41 -7.62 16 33 H 0.12 -5.54 5.24 -51.93 -0.27 -5.81 16 34 H 0.12 -5.49 7.17 -51.93 -0.37 -5.86 16 35 H 0.14 -6.51 8.14 -51.93 -0.42 -6.94 16 36 H 0.14 -6.45 6.86 -51.93 -0.36 -6.80 16 37 H 0.14 -7.05 8.14 -51.93 -0.42 -7.47 16 38 H 0.15 -7.15 7.63 -51.93 -0.40 -7.55 16 39 H 0.14 -6.13 7.82 -51.93 -0.41 -6.54 16 40 H 0.14 -6.18 8.14 -51.93 -0.42 -6.60 16 41 H 0.10 -4.25 5.31 -51.93 -0.28 -4.52 16 42 H 0.12 -5.09 8.14 -51.93 -0.42 -5.51 16 43 H 0.09 -4.08 6.41 -51.92 -0.33 -4.41 16 44 H 0.10 -4.75 8.06 -51.93 -0.42 -5.16 16 LS Contribution 288.35 15.07 4.35 4.35 Total: 2.00 -92.79 288.35 -7.59 -100.38 By element: Atomic # 1 Polarization: -162.03 SS G_CDS: -6.91 Total: -168.94 kcal Atomic # 6 Polarization: 43.20 SS G_CDS: 0.21 Total: 43.42 kcal Atomic # 7 Polarization: 36.23 SS G_CDS: -0.32 Total: 35.91 kcal Atomic # 8 Polarization: 18.95 SS G_CDS: -0.43 Total: 18.52 kcal Atomic # 14 Polarization: -29.15 SS G_CDS: -4.48 Total: -33.63 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -92.79 -7.59 -100.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 359.546 kcal (2) G-P(sol) polarization free energy of solvation -92.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 266.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 259.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds