Wall clock time and date at job start Fri Mar 20 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47273 * 2 1 4 4 C 1.53004 * 109.46606 * 239.99783 * 2 1 3 5 5 O 1.42897 * 109.47244 * 299.99945 * 4 2 1 6 6 Si 1.86295 * 109.46938 * 60.00556 * 4 2 1 7 7 H 1.48495 * 109.47750 * 59.99453 * 6 4 2 8 8 H 1.48506 * 109.46915 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46911 * 299.99423 * 6 4 2 10 10 N 1.46902 * 109.46785 * 120.00070 * 2 1 3 11 11 H 1.00904 * 109.47062 * 60.00549 * 10 2 1 12 12 C 1.46908 * 109.46886 * 179.97438 * 10 2 1 13 13 C 1.46892 * 109.47574 * 299.99498 * 10 2 1 14 14 C 1.52995 * 109.47588 * 172.43838 * 13 10 2 15 15 C 1.55001 * 113.97062 * 68.91263 * 14 13 10 16 16 C 1.53943 * 104.77611 * 147.01485 * 15 14 13 17 17 N 1.48070 * 106.83186 * 0.31886 * 16 15 14 18 18 H 1.00899 * 112.30559 * 211.92507 * 17 16 15 19 19 C 1.48575 * 105.50851 * 333.57665 * 17 16 15 20 20 C 1.47438 * 108.25736 * 88.35415 * 17 16 15 21 21 C 1.52938 * 109.63775 * 313.34300 * 20 17 16 22 22 C 1.53208 * 110.02231 * 304.42551 * 21 20 17 23 23 H 1.09001 * 109.46535 * 299.99835 * 1 2 3 24 24 H 1.08991 * 109.47179 * 59.99660 * 1 2 3 25 25 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46684 * 180.02562 * 4 2 1 27 27 H 0.96701 * 113.99664 * 60.00394 * 5 4 2 28 28 H 1.09003 * 109.46207 * 70.86100 * 12 10 2 29 29 H 1.08990 * 109.47002 * 190.85469 * 12 10 2 30 30 H 1.08998 * 109.46861 * 310.86189 * 12 10 2 31 31 H 1.09006 * 109.47212 * 52.44067 * 13 10 2 32 32 H 1.08997 * 109.47120 * 292.44506 * 13 10 2 33 33 H 1.08997 * 110.38087 * 265.83046 * 15 14 13 34 34 H 1.09007 * 110.37459 * 28.18137 * 15 14 13 35 35 H 1.09001 * 109.94257 * 241.00366 * 16 15 14 36 36 H 1.08997 * 110.06728 * 119.71057 * 16 15 14 37 37 H 1.08997 * 110.86292 * 283.54347 * 19 17 16 38 38 H 1.08999 * 110.86286 * 159.89250 * 19 17 16 39 39 H 1.09003 * 109.43589 * 193.30337 * 20 17 16 40 40 H 1.08993 * 109.43624 * 73.38672 * 20 17 16 41 41 H 1.09004 * 109.38122 * 64.58793 * 21 20 17 42 42 H 1.08999 * 109.38320 * 184.36415 * 21 20 17 43 43 H 1.09008 * 109.71204 * 173.54716 * 22 21 20 44 44 H 1.09002 * 109.71192 * 294.13543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5636 -2.0686 -1.2492 6 14 1.4190 0.1570 -2.7703 7 1 1.9140 1.5570 -2.7704 8 1 1.9144 -0.5428 -3.9829 9 1 -0.0660 0.1570 -2.7703 10 7 2.0197 -0.6925 1.1995 11 1 1.6833 -1.6439 1.1994 12 6 3.4887 -0.6931 1.1992 13 6 1.5301 -0.0001 2.3989 14 6 1.8791 -0.8225 3.6409 15 6 3.3956 -0.8725 3.9574 16 6 3.4742 -0.9387 5.4934 17 7 2.0809 -0.9339 5.9945 18 1 1.9974 -0.4760 6.8897 19 6 1.2856 -0.2373 4.9506 20 6 1.6066 -2.3287 6.0541 21 6 1.9627 -3.0486 4.7526 22 6 1.3914 -2.2817 3.5556 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 -0.7217 -1.2491 27 1 0.5996 -2.1448 -1.2492 28 1 3.8523 0.3162 1.3926 29 1 3.8519 -1.3653 1.9764 30 1 3.8517 -1.0303 0.2283 31 1 0.4485 0.1186 2.3339 32 1 1.9997 0.9811 2.4690 33 1 3.8465 -1.7611 3.5158 34 1 3.8898 0.0272 3.5904 35 1 4.0107 -0.0705 5.8760 36 1 3.9784 -1.8541 5.8030 37 1 1.4407 0.8404 4.9992 38 1 0.2274 -0.4826 5.0406 39 1 0.5251 -2.3386 6.1900 40 1 2.0821 -2.8380 6.8922 41 1 3.0469 -3.1105 4.6584 42 1 1.5431 -4.0545 4.7692 43 1 1.7430 -2.7333 2.6279 44 1 0.3022 -2.3084 3.5877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698505114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:48 Heat of formation + Delta-G solvation = 181.591073 kcal Electronic energy + Delta-G solvation = -20689.676235 eV Core-core repulsion = 17959.476571 eV Total energy + Delta-G solvation = -2730.199664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.202 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.18395 -42.38466 -38.19406 -35.60498 -33.86073 -32.82709 -31.81850 -29.56188 -27.35528 -27.07921 -26.00797 -24.41026 -22.95526 -22.60494 -20.82392 -20.00727 -19.16496 -18.77486 -17.93008 -17.44246 -16.96211 -16.78608 -16.57475 -16.03985 -15.63431 -15.23413 -14.86542 -14.74255 -14.55862 -14.16438 -13.98835 -13.89114 -13.70772 -13.56815 -13.49014 -13.28864 -12.78579 -12.57650 -12.48186 -12.43737 -12.18508 -12.11548 -11.97266 -11.81388 -11.72331 -11.64916 -10.86043 0.53205 0.93726 1.12039 1.36281 1.44135 2.03403 2.34221 2.47197 2.64260 2.77550 2.84073 2.96004 3.09168 3.20988 3.29736 3.41206 3.47210 3.54027 3.56685 3.61231 3.80142 3.84233 3.93896 4.08146 4.13285 4.15212 4.16700 4.28400 4.35822 4.44383 4.48299 4.51733 4.53296 4.55197 4.62534 4.68523 4.70573 4.78117 4.84389 4.87414 4.95866 5.03579 5.15236 5.19112 6.39091 Molecular weight = 244.20amu Principal moments of inertia in cm(-1) A = 0.043554 B = 0.006902 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.722298 B = 4055.866872 C = 4069.983577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.180 0.820 4 C -0.109 4.109 5 O -0.549 6.549 6 Si 0.941 3.059 7 H -0.258 1.258 8 H -0.313 1.313 9 H -0.254 1.254 10 N -0.366 5.366 11 H 0.431 0.569 12 C -0.086 4.086 13 C 0.005 3.995 14 C -0.088 4.088 15 C -0.158 4.158 16 C -0.009 4.009 17 N -0.378 5.378 18 H 0.451 0.549 19 C 0.010 3.990 20 C -0.004 4.004 21 C -0.152 4.152 22 C -0.143 4.143 23 H 0.123 0.877 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.160 0.840 27 H 0.397 0.603 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.115 0.885 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 2.912 16.214 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.091 4.091 3 H 0.198 0.802 4 C -0.223 4.223 5 O -0.358 6.358 6 Si 0.771 3.229 7 H -0.182 1.182 8 H -0.241 1.241 9 H -0.178 1.178 10 N 0.054 4.946 11 H 0.270 0.730 12 C -0.227 4.227 13 C -0.116 4.116 14 C -0.089 4.089 15 C -0.195 4.195 16 C -0.130 4.130 17 N 0.041 4.959 18 H 0.292 0.708 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.189 4.189 22 C -0.180 4.180 23 H 0.142 0.858 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.177 0.823 27 H 0.249 0.751 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.178 0.822 32 H 0.189 0.811 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.393 3.360 15.325 15.751 hybrid contribution -0.574 -0.671 -0.030 0.883 sum 0.819 2.689 15.295 15.551 Atomic orbital electron populations 1.22782 0.90253 1.06728 1.07684 1.23936 0.99186 1.02192 0.83765 0.80238 1.26049 1.06540 0.88406 1.01340 1.86634 1.29530 1.22979 1.96640 0.85686 0.80304 0.78769 0.78103 1.18187 1.24057 1.17830 1.45256 1.16498 1.19589 1.13297 0.72958 1.24910 0.75739 1.11479 1.10540 1.23910 1.08129 0.99503 0.80052 1.22357 0.96236 0.96022 0.94327 1.23609 0.94769 1.08079 0.93045 1.24408 0.80870 1.10143 0.97598 1.46002 1.15341 1.15665 1.18843 0.70828 1.24907 0.99758 1.02435 0.84112 1.23872 1.05967 0.80018 1.02749 1.22083 1.04077 1.00761 0.92017 1.22358 1.03882 0.92146 0.99603 0.85838 0.90255 0.88436 0.82278 0.75123 0.83381 0.83871 0.86679 0.82172 0.81096 0.86805 0.85223 0.84011 0.85623 0.82084 0.83022 0.84645 0.85824 0.88628 0.89393 0.89150 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 17.39 8.12 71.98 0.58 17.97 16 2 C 0.01 -0.99 1.37 44.92 0.06 -0.93 16 3 H 0.18 -15.82 7.96 -2.39 -0.02 -15.84 16 4 C -0.11 7.82 2.13 71.98 0.15 7.97 16 5 O -0.55 37.38 12.21 -148.98 -1.82 35.56 16 6 Si 0.94 -51.69 26.38 68.60 1.81 -49.89 16 7 H -0.26 13.35 7.11 99.48 0.71 14.06 16 8 H -0.31 12.71 7.11 99.48 0.71 13.42 16 9 H -0.25 13.39 6.36 99.48 0.63 14.02 16 10 N -0.37 33.86 0.29 -897.04 -0.26 33.60 16 11 H 0.43 -40.12 5.55 -89.69 -0.50 -40.61 16 12 C -0.09 7.81 7.82 127.69 1.00 8.81 16 13 C 0.01 -0.50 4.13 86.30 0.36 -0.15 16 14 C -0.09 8.45 0.83 -50.36 -0.04 8.41 16 15 C -0.16 14.80 3.53 31.60 0.11 14.91 16 16 C -0.01 0.79 6.09 86.40 0.53 1.31 16 17 N -0.38 35.48 1.09 -880.58 -0.96 34.52 16 18 H 0.45 -43.21 8.82 -89.69 -0.79 -44.00 16 19 C 0.01 -0.95 5.81 86.75 0.50 -0.45 16 20 C 0.00 0.33 5.64 86.18 0.49 0.82 16 21 C -0.15 12.78 5.52 30.64 0.17 12.95 16 22 C -0.14 12.81 4.69 31.03 0.15 12.95 16 23 H 0.12 -10.55 6.13 -2.39 -0.01 -10.56 16 24 H 0.08 -5.58 5.55 -2.39 -0.01 -5.59 16 25 H 0.10 -7.90 6.78 -2.39 -0.02 -7.91 16 26 H 0.16 -12.00 5.89 -2.38 -0.01 -12.01 16 27 H 0.40 -28.74 6.99 -74.06 -0.52 -29.26 16 28 H 0.15 -13.95 7.57 -2.39 -0.02 -13.97 16 29 H 0.14 -13.38 4.55 -2.39 -0.01 -13.39 16 30 H 0.11 -9.83 5.62 -2.39 -0.01 -9.84 16 31 H 0.16 -15.82 5.76 -2.38 -0.01 -15.84 16 32 H 0.17 -17.28 7.89 -2.39 -0.02 -17.30 16 33 H 0.11 -10.51 5.24 -2.39 -0.01 -10.53 16 34 H 0.13 -12.41 7.17 -2.38 -0.02 -12.43 16 35 H 0.14 -12.90 8.14 -2.39 -0.02 -12.92 16 36 H 0.13 -11.04 6.86 -2.39 -0.02 -11.06 16 37 H 0.16 -15.90 8.14 -2.39 -0.02 -15.92 16 38 H 0.15 -14.59 7.63 -2.39 -0.02 -14.61 16 39 H 0.14 -11.82 7.82 -2.39 -0.02 -11.84 16 40 H 0.12 -10.40 8.14 -2.39 -0.02 -10.41 16 41 H 0.10 -8.05 5.31 -2.39 -0.01 -8.06 16 42 H 0.09 -6.73 8.14 -2.39 -0.02 -6.75 16 43 H 0.09 -8.11 6.41 -2.38 -0.02 -8.13 16 44 H 0.10 -9.13 8.06 -2.39 -0.02 -9.15 16 Total: 2.00 -190.75 288.35 2.70 -188.05 By element: Atomic # 1 Polarization: -326.31 SS G_CDS: -0.12 Total: -326.43 kcal Atomic # 6 Polarization: 80.53 SS G_CDS: 4.06 Total: 84.58 kcal Atomic # 7 Polarization: 69.34 SS G_CDS: -1.22 Total: 68.12 kcal Atomic # 8 Polarization: 37.38 SS G_CDS: -1.82 Total: 35.56 kcal Atomic # 14 Polarization: -51.69 SS G_CDS: 1.81 Total: -49.89 kcal Total: -190.75 2.70 -188.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 369.643 kcal (2) G-P(sol) polarization free energy of solvation -190.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -188.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds