Wall clock time and date at job start Fri Mar 20 2020 13:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47620 * 2 1 4 4 C 1.52999 * 109.47262 * 239.99695 * 2 1 3 5 5 O 1.42897 * 109.47597 * 300.00124 * 4 2 1 6 6 Si 1.86301 * 109.46760 * 60.00432 * 4 2 1 7 7 H 1.48501 * 109.47455 * 60.00118 * 6 4 2 8 8 H 1.48505 * 109.46741 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47312 * 299.99506 * 6 4 2 10 10 N 1.46903 * 109.46996 * 120.00247 * 2 1 3 11 11 H 1.00899 * 109.47590 * 59.99729 * 10 2 1 12 12 C 1.46898 * 109.46898 * 300.00181 * 10 2 1 13 13 C 1.46895 * 109.47157 * 180.02562 * 10 2 1 14 14 C 1.53005 * 109.47138 * 196.31913 * 13 10 2 15 15 C 1.54997 * 113.24151 * 173.81474 * 14 13 10 16 16 C 1.54039 * 104.77747 * 146.60852 * 15 14 13 17 17 N 1.48068 * 106.83023 * 0.33801 * 16 15 14 18 18 H 1.00903 * 111.52982 * 212.31570 * 17 16 15 19 19 C 1.48652 * 105.48614 * 333.57574 * 17 16 15 20 20 C 1.47433 * 108.26463 * 88.29538 * 17 16 15 21 21 C 1.52943 * 109.67027 * 313.36737 * 20 17 16 22 22 C 1.53202 * 110.02164 * 304.39937 * 21 20 17 23 23 H 1.08993 * 109.47333 * 300.00003 * 1 2 3 24 24 H 1.09004 * 109.46484 * 60.00302 * 1 2 3 25 25 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46940 * 180.02562 * 4 2 1 27 27 H 0.96702 * 114.00026 * 60.00001 * 5 4 2 28 28 H 1.08994 * 109.47526 * 49.33361 * 12 10 2 29 29 H 1.08998 * 109.47537 * 169.33644 * 12 10 2 30 30 H 1.09006 * 109.47099 * 289.33715 * 12 10 2 31 31 H 1.08997 * 109.47310 * 76.32219 * 13 10 2 32 32 H 1.08999 * 109.47084 * 316.31688 * 13 10 2 33 33 H 1.08997 * 110.38482 * 265.43445 * 15 14 13 34 34 H 1.09002 * 110.38008 * 27.78567 * 15 14 13 35 35 H 1.08997 * 109.98692 * 119.68008 * 16 15 14 36 36 H 1.08996 * 109.98882 * 241.00058 * 16 15 14 37 37 H 1.09000 * 110.84950 * 283.54273 * 19 17 16 38 38 H 1.08997 * 110.85801 * 159.90861 * 19 17 16 39 39 H 1.09005 * 109.43254 * 73.42275 * 20 17 16 40 40 H 1.08991 * 109.44508 * 193.30528 * 20 17 16 41 41 H 1.09001 * 109.37448 * 64.56405 * 21 20 17 42 42 H 1.09000 * 109.37783 * 184.33814 * 21 20 17 43 43 H 1.09004 * 109.71379 * 294.17858 * 22 21 20 44 44 H 1.09001 * 109.71563 * 173.54515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5638 -2.0686 -1.2492 6 14 1.4191 0.1570 -2.7703 7 1 1.9142 1.5571 -2.7704 8 1 1.9147 -0.5428 -3.9828 9 1 -0.0658 0.1570 -2.7704 10 7 2.0197 -0.6926 1.1994 11 1 1.6833 -1.6438 1.1995 12 6 1.5299 -0.0001 2.3988 13 6 3.4886 -0.6921 1.1998 14 6 3.9988 -1.7353 2.1960 15 6 5.5376 -1.9164 2.1576 16 6 5.9317 -2.2387 3.6115 17 7 4.6807 -2.2435 4.4037 18 1 4.8397 -1.9275 5.3487 19 6 3.7473 -1.3434 3.6769 20 6 4.1094 -3.6018 4.3570 21 6 4.1197 -4.1153 2.9164 22 6 3.3786 -3.1327 2.0040 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 -0.7217 -1.2489 27 1 0.5998 -2.1450 -1.2493 28 1 0.4567 0.1676 2.3089 29 1 1.7295 -0.6119 3.2786 30 1 2.0402 0.9579 2.4991 31 1 3.8516 0.2942 1.4889 32 1 3.8523 -0.9348 0.2013 33 1 5.8064 -2.7427 1.4996 34 1 6.0201 -0.9960 1.8288 35 1 6.4073 -3.2182 3.6602 36 1 6.6104 -1.4752 3.9916 37 1 4.0025 -0.2980 3.8503 38 1 2.7144 -1.5440 3.9614 39 1 4.7038 -4.2670 4.9834 40 1 3.0841 -3.5771 4.7259 41 1 5.1502 -4.2178 2.5763 42 1 3.6269 -5.0867 2.8752 43 1 2.3226 -3.1064 2.2726 44 1 3.4865 -3.4431 0.9647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698505114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:54 Heat of formation + Delta-G solvation = 259.000182 kcal Electronic energy + Delta-G solvation = -20814.591413 eV Core-core repulsion = 18087.748461 eV Total energy + Delta-G solvation = -2726.842953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.202 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -47.92229 -45.95881 -41.20893 -39.41629 -37.45352 -36.36451 -34.73581 -33.91449 -30.94979 -30.44865 -29.53756 -28.11776 -26.77321 -25.90973 -24.56886 -23.68384 -22.54998 -22.44640 -21.73187 -20.86968 -20.37228 -20.25827 -20.10223 -19.58291 -18.84855 -18.71256 -18.37511 -18.19357 -17.84101 -17.75104 -17.68334 -17.37950 -17.16466 -17.07658 -16.86932 -16.62287 -16.37236 -16.16675 -16.04898 -15.85198 -15.67539 -15.40807 -15.33108 -15.09502 -14.62292 -14.28067 -13.69011 -3.00165 -2.85042 -1.71736 -1.39535 -1.33977 -1.10657 -1.04426 -0.94416 -0.90907 -0.78690 -0.68706 -0.51519 -0.37756 -0.31888 -0.27895 -0.17287 -0.06242 -0.04231 0.00848 0.02405 0.13088 0.16695 0.22634 0.30937 0.36785 0.41530 0.49712 0.53137 0.62232 0.70308 0.74838 0.80737 0.86900 0.92840 1.03489 1.24090 1.25275 1.35872 1.36591 1.39250 1.48586 1.50505 1.74477 1.98140 3.33360 Molecular weight = 244.20amu Principal moments of inertia in cm(-1) A = 0.035578 B = 0.007838 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.824169 B = 3571.667056 C = 3730.019435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.009 4.009 3 H 0.157 0.843 4 C -0.151 4.151 5 O -0.537 6.537 6 Si 0.950 3.050 7 H -0.236 1.236 8 H -0.229 1.229 9 H -0.236 1.236 10 N -0.382 5.382 11 H 0.426 0.574 12 C -0.075 4.075 13 C 0.006 3.994 14 C -0.105 4.105 15 C -0.127 4.127 16 C -0.009 4.009 17 N -0.389 5.389 18 H 0.443 0.557 19 C -0.018 4.018 20 C -0.010 4.010 21 C -0.146 4.146 22 C -0.142 4.142 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.391 0.609 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.082 0.918 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 0.424 12.438 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.110 4.110 3 H 0.174 0.826 4 C -0.260 4.260 5 O -0.345 6.345 6 Si 0.767 3.233 7 H -0.159 1.159 8 H -0.151 1.151 9 H -0.158 1.158 10 N 0.037 4.963 11 H 0.265 0.735 12 C -0.216 4.216 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.165 4.165 16 C -0.130 4.130 17 N 0.031 4.969 18 H 0.282 0.718 19 C -0.140 4.140 20 C -0.131 4.131 21 C -0.183 4.183 22 C -0.179 4.179 23 H 0.117 0.883 24 H 0.136 0.864 25 H 0.108 0.892 26 H 0.154 0.846 27 H 0.242 0.758 28 H 0.158 0.842 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.120 0.880 42 H 0.142 0.858 43 H 0.101 0.899 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.581 0.860 11.542 12.115 hybrid contribution -0.441 -0.317 0.969 1.111 sum 3.140 0.543 12.511 12.910 Atomic orbital electron populations 1.22729 0.88794 1.06316 1.08485 1.24483 1.00649 1.01670 0.84220 0.82586 1.26817 1.05475 0.90083 1.03613 1.86599 1.28878 1.22247 1.96742 0.85477 0.81834 0.79900 0.76122 1.15909 1.15097 1.15850 1.45591 1.14862 1.19866 1.15939 0.73501 1.24659 1.08135 1.02468 0.86362 1.23810 0.77493 1.04178 1.06098 1.22630 0.99570 0.96672 0.91775 1.22933 0.90689 1.07783 0.95098 1.24557 0.85162 1.10611 0.92667 1.46213 1.15857 1.16265 1.18585 0.71840 1.25509 0.97044 0.98536 0.92936 1.24146 1.04870 0.80825 1.03280 1.22148 1.04812 1.01552 0.89821 1.22373 0.99845 0.90904 1.04811 0.88265 0.86359 0.89212 0.84588 0.75787 0.84239 0.86403 0.84914 0.83478 0.82757 0.86009 0.86680 0.83945 0.84092 0.83683 0.84211 0.84120 0.85048 0.88022 0.85794 0.89949 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 8.28 8.13 37.16 0.30 8.58 16 2 C -0.01 0.38 1.37 -67.71 -0.09 0.29 16 3 H 0.16 -6.89 7.96 -51.93 -0.41 -7.30 16 4 C -0.15 5.83 2.15 37.16 0.08 5.91 16 5 O -0.54 19.96 12.21 -35.23 -0.43 19.53 16 6 Si 0.95 -29.83 26.38 -169.99 -4.48 -34.31 16 7 H -0.24 6.97 7.11 56.52 0.40 7.37 16 8 H -0.23 5.99 7.11 56.52 0.40 6.39 16 9 H -0.24 7.05 6.36 56.52 0.36 7.41 16 10 N -0.38 17.97 0.31 -234.89 -0.07 17.90 16 11 H 0.43 -20.31 5.59 -39.29 -0.22 -20.53 16 12 C -0.08 3.57 8.46 60.06 0.51 4.08 16 13 C 0.01 -0.29 4.27 -3.82 -0.02 -0.31 16 14 C -0.11 4.98 0.89 -151.69 -0.14 4.85 16 15 C -0.13 5.73 5.51 -25.13 -0.14 5.59 16 16 C -0.01 0.41 6.08 -2.64 -0.02 0.39 16 17 N -0.39 18.68 1.10 -229.56 -0.25 18.43 16 18 H 0.44 -21.74 8.82 -39.29 -0.35 -22.09 16 19 C -0.02 0.90 4.20 -1.66 -0.01 0.89 16 20 C -0.01 0.46 5.66 -3.56 -0.02 0.44 16 21 C -0.15 6.31 5.52 -26.66 -0.15 6.17 16 22 C -0.14 6.40 4.22 -26.06 -0.11 6.29 16 23 H 0.10 -4.05 6.07 -51.93 -0.32 -4.36 16 24 H 0.12 -4.34 5.55 -51.93 -0.29 -4.63 16 25 H 0.09 -3.65 6.78 -51.93 -0.35 -4.00 16 26 H 0.14 -5.57 5.80 -51.93 -0.30 -5.87 16 27 H 0.39 -15.15 6.99 45.56 0.32 -14.83 16 28 H 0.14 -6.40 5.63 -51.93 -0.29 -6.70 16 29 H 0.12 -5.85 4.51 -51.93 -0.23 -6.09 16 30 H 0.13 -6.36 7.75 -51.93 -0.40 -6.76 16 31 H 0.15 -7.22 7.70 -51.93 -0.40 -7.62 16 32 H 0.15 -7.17 5.44 -51.93 -0.28 -7.45 16 33 H 0.12 -5.26 6.93 -51.93 -0.36 -5.62 16 34 H 0.11 -5.12 8.01 -51.93 -0.42 -5.53 16 35 H 0.14 -6.34 6.85 -51.93 -0.36 -6.70 16 36 H 0.14 -6.40 8.14 -51.93 -0.42 -6.82 16 37 H 0.15 -7.30 8.14 -51.93 -0.42 -7.72 16 38 H 0.14 -7.08 5.35 -51.93 -0.28 -7.36 16 39 H 0.14 -6.21 8.14 -51.93 -0.42 -6.63 16 40 H 0.13 -6.04 7.82 -51.93 -0.41 -6.44 16 41 H 0.10 -4.32 5.31 -51.93 -0.28 -4.60 16 42 H 0.12 -5.02 8.14 -51.93 -0.42 -5.44 16 43 H 0.08 -3.81 7.00 -51.93 -0.36 -4.18 16 44 H 0.12 -4.97 8.14 -51.93 -0.42 -5.40 16 LS Contribution 289.61 15.07 4.36 4.36 Total: 2.00 -92.81 289.61 -7.60 -100.41 By element: Atomic # 1 Polarization: -162.55 SS G_CDS: -6.93 Total: -169.49 kcal Atomic # 6 Polarization: 42.97 SS G_CDS: 0.21 Total: 43.18 kcal Atomic # 7 Polarization: 36.65 SS G_CDS: -0.33 Total: 36.32 kcal Atomic # 8 Polarization: 19.96 SS G_CDS: -0.43 Total: 19.53 kcal Atomic # 14 Polarization: -29.83 SS G_CDS: -4.48 Total: -34.31 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -92.81 -7.60 -100.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 359.411 kcal (2) G-P(sol) polarization free energy of solvation -92.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 266.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 259.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds