Wall clock time and date at job start Fri Mar 20 2020 13:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47620 * 2 1 4 4 C 1.52999 * 109.47262 * 239.99695 * 2 1 3 5 5 O 1.42897 * 109.47597 * 300.00124 * 4 2 1 6 6 Si 1.86301 * 109.46760 * 60.00432 * 4 2 1 7 7 H 1.48501 * 109.47455 * 60.00118 * 6 4 2 8 8 H 1.48505 * 109.46741 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47312 * 299.99506 * 6 4 2 10 10 N 1.46903 * 109.46996 * 120.00247 * 2 1 3 11 11 H 1.00899 * 109.47590 * 59.99729 * 10 2 1 12 12 C 1.46898 * 109.46898 * 300.00181 * 10 2 1 13 13 C 1.46895 * 109.47157 * 180.02562 * 10 2 1 14 14 C 1.53005 * 109.47138 * 196.31913 * 13 10 2 15 15 C 1.54997 * 113.24151 * 173.81474 * 14 13 10 16 16 C 1.54039 * 104.77747 * 146.60852 * 15 14 13 17 17 N 1.48068 * 106.83023 * 0.33801 * 16 15 14 18 18 H 1.00903 * 111.52982 * 212.31570 * 17 16 15 19 19 C 1.48652 * 105.48614 * 333.57574 * 17 16 15 20 20 C 1.47433 * 108.26463 * 88.29538 * 17 16 15 21 21 C 1.52943 * 109.67027 * 313.36737 * 20 17 16 22 22 C 1.53202 * 110.02164 * 304.39937 * 21 20 17 23 23 H 1.08993 * 109.47333 * 300.00003 * 1 2 3 24 24 H 1.09004 * 109.46484 * 60.00302 * 1 2 3 25 25 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46940 * 180.02562 * 4 2 1 27 27 H 0.96702 * 114.00026 * 60.00001 * 5 4 2 28 28 H 1.08994 * 109.47526 * 49.33361 * 12 10 2 29 29 H 1.08998 * 109.47537 * 169.33644 * 12 10 2 30 30 H 1.09006 * 109.47099 * 289.33715 * 12 10 2 31 31 H 1.08997 * 109.47310 * 76.32219 * 13 10 2 32 32 H 1.08999 * 109.47084 * 316.31688 * 13 10 2 33 33 H 1.08997 * 110.38482 * 265.43445 * 15 14 13 34 34 H 1.09002 * 110.38008 * 27.78567 * 15 14 13 35 35 H 1.08997 * 109.98692 * 119.68008 * 16 15 14 36 36 H 1.08996 * 109.98882 * 241.00058 * 16 15 14 37 37 H 1.09000 * 110.84950 * 283.54273 * 19 17 16 38 38 H 1.08997 * 110.85801 * 159.90861 * 19 17 16 39 39 H 1.09005 * 109.43254 * 73.42275 * 20 17 16 40 40 H 1.08991 * 109.44508 * 193.30528 * 20 17 16 41 41 H 1.09001 * 109.37448 * 64.56405 * 21 20 17 42 42 H 1.09000 * 109.37783 * 184.33814 * 21 20 17 43 43 H 1.09004 * 109.71379 * 294.17858 * 22 21 20 44 44 H 1.09001 * 109.71563 * 173.54515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5638 -2.0686 -1.2492 6 14 1.4191 0.1570 -2.7703 7 1 1.9142 1.5571 -2.7704 8 1 1.9147 -0.5428 -3.9828 9 1 -0.0658 0.1570 -2.7704 10 7 2.0197 -0.6926 1.1994 11 1 1.6833 -1.6438 1.1995 12 6 1.5299 -0.0001 2.3988 13 6 3.4886 -0.6921 1.1998 14 6 3.9988 -1.7353 2.1960 15 6 5.5376 -1.9164 2.1576 16 6 5.9317 -2.2387 3.6115 17 7 4.6807 -2.2435 4.4037 18 1 4.8397 -1.9275 5.3487 19 6 3.7473 -1.3434 3.6769 20 6 4.1094 -3.6018 4.3570 21 6 4.1197 -4.1153 2.9164 22 6 3.3786 -3.1327 2.0040 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 -0.7217 -1.2489 27 1 0.5998 -2.1450 -1.2493 28 1 0.4567 0.1676 2.3089 29 1 1.7295 -0.6119 3.2786 30 1 2.0402 0.9579 2.4991 31 1 3.8516 0.2942 1.4889 32 1 3.8523 -0.9348 0.2013 33 1 5.8064 -2.7427 1.4996 34 1 6.0201 -0.9960 1.8288 35 1 6.4073 -3.2182 3.6602 36 1 6.6104 -1.4752 3.9916 37 1 4.0025 -0.2980 3.8503 38 1 2.7144 -1.5440 3.9614 39 1 4.7038 -4.2670 4.9834 40 1 3.0841 -3.5771 4.7259 41 1 5.1502 -4.2178 2.5763 42 1 3.6269 -5.0867 2.8752 43 1 2.3226 -3.1064 2.2726 44 1 3.4865 -3.4431 0.9647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698505114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:45:53 Heat of formation + Delta-G solvation = 180.929946 kcal Electronic energy + Delta-G solvation = -20817.976793 eV Core-core repulsion = 18087.748461 eV Total energy + Delta-G solvation = -2730.228332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 244.202 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.20697 -42.36070 -38.08998 -35.79716 -33.88968 -32.95571 -31.05913 -30.23544 -27.34913 -27.06127 -25.83870 -24.44730 -23.23568 -22.40339 -20.84459 -19.98007 -19.20941 -18.85922 -18.09302 -17.15736 -17.04326 -16.85694 -16.55733 -16.03316 -15.86397 -15.01711 -14.96835 -14.60567 -14.46469 -14.17839 -14.08705 -14.04945 -13.90754 -13.39441 -13.20742 -13.09294 -12.96166 -12.69769 -12.63651 -12.38348 -12.24342 -12.09054 -12.00468 -11.86226 -11.74260 -11.65130 -10.86494 0.53847 0.90506 1.11753 1.36439 1.43709 2.02924 2.34751 2.41912 2.61908 2.68560 2.78449 2.91760 3.11457 3.18455 3.28711 3.37237 3.43774 3.54686 3.57209 3.64795 3.78846 3.85198 3.89237 3.92859 4.10563 4.12566 4.16117 4.26533 4.36438 4.44507 4.46057 4.49029 4.52740 4.57144 4.60557 4.65374 4.72422 4.84222 4.86677 4.93072 4.99979 5.06585 5.18094 5.20880 6.36253 Molecular weight = 244.20amu Principal moments of inertia in cm(-1) A = 0.035578 B = 0.007838 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.824169 B = 3571.667056 C = 3730.019435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.180 0.820 4 C -0.102 4.102 5 O -0.545 6.545 6 Si 0.936 3.064 7 H -0.259 1.259 8 H -0.309 1.309 9 H -0.263 1.263 10 N -0.368 5.368 11 H 0.432 0.568 12 C -0.084 4.084 13 C 0.002 3.998 14 C -0.086 4.086 15 C -0.132 4.132 16 C -0.007 4.007 17 N -0.373 5.373 18 H 0.453 0.547 19 C -0.021 4.021 20 C -0.002 4.002 21 C -0.153 4.153 22 C -0.144 4.144 23 H 0.115 0.885 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.168 0.832 27 H 0.397 0.603 28 H 0.126 0.874 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.179 0.821 32 H 0.145 0.855 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 1.601 15.972 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.092 4.092 3 H 0.198 0.802 4 C -0.217 4.217 5 O -0.354 6.354 6 Si 0.767 3.233 7 H -0.183 1.183 8 H -0.236 1.236 9 H -0.187 1.187 10 N 0.051 4.949 11 H 0.271 0.729 12 C -0.224 4.224 13 C -0.119 4.119 14 C -0.087 4.087 15 C -0.170 4.170 16 C -0.129 4.129 17 N 0.045 4.955 18 H 0.295 0.705 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.190 4.190 22 C -0.181 4.181 23 H 0.134 0.866 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.185 0.815 27 H 0.249 0.751 28 H 0.144 0.856 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.196 0.804 32 H 0.163 0.837 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.192 0.808 38 H 0.183 0.817 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.700 2.069 15.077 15.661 hybrid contribution -0.518 -0.712 -0.298 0.930 sum 3.182 1.357 14.778 15.178 Atomic orbital electron populations 1.22753 0.90858 1.06600 1.07288 1.23916 0.98851 1.02337 0.84058 0.80234 1.25990 1.06590 0.88441 1.00678 1.86592 1.29636 1.22626 1.96564 0.85744 0.80082 0.78935 0.78565 1.18316 1.23636 1.18740 1.45303 1.15179 1.19891 1.14500 0.72872 1.24915 1.07489 1.03860 0.86161 1.23976 0.76698 1.05616 1.05605 1.22349 0.97467 0.95325 0.93591 1.22854 0.92622 1.06645 0.94875 1.24386 0.86165 1.09544 0.92853 1.45996 1.15032 1.15297 1.19143 0.70543 1.25819 0.98057 0.99584 0.90701 1.23898 1.05477 0.81979 1.01043 1.22059 1.03795 1.00964 0.92199 1.22334 1.01060 0.91886 1.02821 0.86647 0.90394 0.88445 0.81473 0.75069 0.85588 0.83614 0.83397 0.80374 0.83728 0.88771 0.86608 0.85989 0.83786 0.80843 0.81744 0.85880 0.83491 0.89664 0.89244 0.87742 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 16.98 8.13 71.98 0.59 17.57 16 2 C 0.01 -0.94 1.37 44.92 0.06 -0.88 16 3 H 0.18 -15.92 7.96 -2.39 -0.02 -15.94 16 4 C -0.10 7.63 2.15 71.98 0.16 7.78 16 5 O -0.55 39.03 12.21 -148.98 -1.82 37.21 16 6 Si 0.94 -52.63 26.38 68.60 1.81 -50.82 16 7 H -0.26 13.67 7.11 99.48 0.71 14.38 16 8 H -0.31 13.20 7.11 99.48 0.71 13.90 16 9 H -0.26 13.74 6.36 99.48 0.63 14.37 16 10 N -0.37 34.79 0.31 -897.05 -0.28 34.51 16 11 H 0.43 -41.24 5.59 -89.69 -0.50 -41.74 16 12 C -0.08 8.14 8.46 127.69 1.08 9.22 16 13 C 0.00 -0.23 4.27 86.31 0.37 0.14 16 14 C -0.09 8.10 0.89 -50.36 -0.04 8.06 16 15 C -0.13 11.55 5.51 31.63 0.17 11.73 16 16 C -0.01 0.66 6.08 86.43 0.53 1.19 16 17 N -0.37 35.51 1.10 -880.18 -0.96 34.55 16 18 H 0.45 -44.45 8.82 -89.69 -0.79 -45.24 16 19 C -0.02 2.08 4.20 86.73 0.36 2.44 16 20 C 0.00 0.18 5.66 86.18 0.49 0.66 16 21 C -0.15 12.56 5.52 30.64 0.17 12.73 16 22 C -0.14 12.64 4.22 31.03 0.13 12.77 16 23 H 0.12 -9.30 6.07 -2.39 -0.01 -9.32 16 24 H 0.08 -5.33 5.55 -2.38 -0.01 -5.34 16 25 H 0.10 -7.72 6.78 -2.39 -0.02 -7.74 16 26 H 0.17 -13.50 5.80 -2.39 -0.01 -13.51 16 27 H 0.40 -29.52 6.99 -74.06 -0.52 -30.04 16 28 H 0.13 -11.67 5.63 -2.39 -0.01 -11.69 16 29 H 0.15 -14.94 4.51 -2.39 -0.01 -14.95 16 30 H 0.15 -14.62 7.75 -2.38 -0.02 -14.63 16 31 H 0.18 -17.97 7.70 -2.39 -0.02 -17.99 16 32 H 0.14 -13.40 5.44 -2.39 -0.01 -13.42 16 33 H 0.09 -7.68 6.93 -2.39 -0.02 -7.69 16 34 H 0.12 -10.12 8.01 -2.39 -0.02 -10.14 16 35 H 0.12 -10.31 6.85 -2.39 -0.02 -10.32 16 36 H 0.14 -12.82 8.14 -2.39 -0.02 -12.84 16 37 H 0.17 -18.03 8.14 -2.39 -0.02 -18.05 16 38 H 0.17 -17.13 5.35 -2.39 -0.01 -17.14 16 39 H 0.12 -10.41 8.14 -2.38 -0.02 -10.43 16 40 H 0.15 -13.42 7.82 -2.39 -0.02 -13.44 16 41 H 0.08 -6.75 5.31 -2.39 -0.01 -6.77 16 42 H 0.09 -6.73 8.14 -2.39 -0.02 -6.75 16 43 H 0.10 -9.64 7.00 -2.38 -0.02 -9.65 16 44 H 0.09 -7.49 8.14 -2.39 -0.02 -7.51 16 Total: 2.00 -193.44 289.61 2.68 -190.76 By element: Atomic # 1 Polarization: -329.50 SS G_CDS: -0.12 Total: -329.63 kcal Atomic # 6 Polarization: 79.36 SS G_CDS: 4.06 Total: 83.41 kcal Atomic # 7 Polarization: 70.30 SS G_CDS: -1.25 Total: 69.06 kcal Atomic # 8 Polarization: 39.03 SS G_CDS: -1.82 Total: 37.21 kcal Atomic # 14 Polarization: -52.63 SS G_CDS: 1.81 Total: -50.82 kcal Total: -193.44 2.68 -190.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698505114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 371.691 kcal (2) G-P(sol) polarization free energy of solvation -193.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -190.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds