Wall clock time and date at job start Fri Mar 20 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.43165 * 2 1 4 4 N 1.46687 * 110.48931 * 237.45022 * 2 1 3 5 5 C 1.38448 * 114.27024 * 241.32304 * 4 2 1 6 6 C 1.39465 * 120.48714 * 179.97438 * 5 4 2 7 7 S 1.72026 * 127.56184 * 0.02620 * 6 5 4 8 8 C 1.76523 * 96.69223 * 179.97438 * 7 6 5 9 9 C 1.50704 * 125.24382 * 179.97438 * 8 7 6 10 10 O 1.42902 * 109.47087 * 210.03235 * 9 8 7 11 11 Si 1.86301 * 109.47169 * 330.02959 * 9 8 7 12 12 H 1.48497 * 109.47000 * 59.99662 * 11 9 8 13 13 H 1.48498 * 109.46982 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47328 * 299.99975 * 11 9 8 15 15 N 1.28141 * 109.51217 * 0.02562 * 8 7 6 16 16 C 1.44751 * 117.29543 * 359.69924 * 15 8 7 17 17 H 1.08999 * 109.21450 * 239.84139 * 16 15 8 18 18 C 1.53002 * 108.90886 * 120.98413 * 16 15 8 19 19 C 1.35454 * 119.02672 * 0.02562 * 5 4 2 20 20 S 1.77470 * 107.53274 * 359.93153 * 19 5 4 21 21 H 1.09005 * 109.46741 * 180.69993 * 1 2 3 22 22 H 1.08996 * 109.47202 * 300.70229 * 1 2 3 23 23 H 1.08998 * 109.46951 * 60.70346 * 1 2 3 24 24 H 0.97000 * 122.86066 * 61.29085 * 4 2 1 25 25 H 1.08997 * 109.47115 * 90.02707 * 9 8 7 26 26 H 0.96697 * 114.00046 * 59.99856 * 10 9 8 27 27 H 1.09004 * 109.46974 * 297.96472 * 18 16 15 28 28 H 1.08996 * 109.47583 * 57.96459 * 18 16 15 29 29 H 1.08998 * 109.47321 * 177.96927 * 18 16 15 30 30 H 1.07993 * 126.23719 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 7 2.0435 -0.7393 -1.1582 5 6 2.8100 -1.8454 -0.8331 6 6 3.3628 -2.6425 -1.8352 7 16 3.2210 -2.4362 -3.5371 8 6 4.1924 -3.8369 -3.9958 9 6 4.4889 -4.2640 -5.4103 10 8 4.6523 -5.6829 -5.4551 11 14 3.0763 -3.7663 -6.5183 12 1 2.9064 -2.2918 -6.4717 13 1 3.3688 -4.1866 -7.9122 14 1 1.8280 -4.4232 -6.0543 15 7 4.6057 -4.4352 -2.9407 16 6 4.2214 -3.8712 -1.6642 17 1 5.1183 -3.6033 -1.1058 18 6 3.4393 -4.9217 -0.8732 19 6 3.0144 -2.1427 0.4725 20 16 2.1669 -0.9187 1.4385 21 1 -0.3633 -1.0277 0.0126 22 1 -0.3633 0.5247 0.8836 23 1 -0.3633 0.5029 -0.8962 24 1 1.8611 -0.4759 -2.0738 25 1 5.4051 -3.7818 -5.7510 26 1 3.8739 -6.1778 -5.1648 27 1 2.5302 -5.1823 -1.4153 28 1 4.0542 -5.8127 -0.7457 29 1 3.1763 -4.5188 0.1048 30 1 3.5897 -2.9724 0.8559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725679766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:58:58 Heat of formation + Delta-G solvation = 179.000184 kcal Electronic energy + Delta-G solvation = -15365.358970 eV Core-core repulsion = 12808.026962 eV Total energy + Delta-G solvation = -2557.332007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.01773 -41.64037 -39.44633 -36.90699 -34.54865 -32.30163 -31.32634 -30.36409 -26.81308 -25.68687 -24.62789 -22.96043 -22.35319 -20.36354 -20.22700 -19.50198 -18.90487 -18.34144 -18.20880 -17.98002 -17.67765 -17.43415 -16.92637 -16.60664 -16.15264 -15.78622 -15.45249 -15.04061 -14.89765 -14.81264 -14.59270 -14.42827 -14.12279 -13.80751 -13.62622 -13.54894 -13.07663 -12.88052 -12.84901 -12.21021 -10.38003 -4.70566 -2.75151 -2.18082 -1.89527 -1.82090 -1.61576 -1.41336 -0.61347 -0.45220 -0.05853 -0.00304 0.41877 0.46684 0.69309 1.12639 1.32630 1.62226 1.73063 1.76867 1.84319 1.84637 1.93825 2.02673 2.58012 2.71073 2.78055 2.79740 2.92258 3.21929 3.29615 3.42496 3.82775 4.08834 4.93790 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.006955 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.214070 B = 4024.917532 C = 4643.213790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 H 0.139 0.861 4 N -0.734 5.734 5 C 0.126 3.874 6 C -0.034 4.034 7 S 0.204 5.796 8 C 0.103 3.897 9 C -0.051 4.051 10 O -0.504 6.504 11 Si 0.908 3.092 12 H -0.223 1.223 13 H -0.202 1.202 14 H -0.230 1.230 15 N -0.402 5.402 16 C 0.041 3.959 17 H 0.177 0.823 18 C -0.136 4.136 19 C -0.015 4.015 20 S 0.141 5.859 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.432 0.568 25 H 0.158 0.842 26 H 0.386 0.614 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 3.399 4.710 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.086 4.086 3 H 0.156 0.844 4 N -0.374 5.374 5 C 0.008 3.992 6 C -0.183 4.183 7 S 0.467 5.533 8 C -0.197 4.197 9 C -0.164 4.164 10 O -0.309 6.309 11 Si 0.723 3.277 12 H -0.146 1.146 13 H -0.123 1.123 14 H -0.152 1.152 15 N -0.111 5.111 16 C -0.074 4.074 17 H 0.194 0.806 18 C -0.195 4.195 19 C -0.175 4.175 20 S 0.401 5.599 21 H 0.097 0.903 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.274 0.726 25 H 0.175 0.825 26 H 0.235 0.765 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.881 4.293 4.895 7.120 hybrid contribution 0.336 -0.582 -0.207 0.704 sum -2.545 3.710 4.688 6.498 Atomic orbital electron populations 1.22468 0.89465 1.05125 1.05890 1.24517 1.00252 0.99516 0.84361 0.84405 1.44860 1.56218 1.26912 1.09434 1.15601 1.00087 0.92308 0.91177 1.27522 0.92640 0.96889 1.01203 1.85272 1.46188 1.28886 0.93003 1.29973 0.95160 0.92952 1.01650 1.25318 1.14288 0.87787 0.89009 1.86708 1.43266 1.12821 1.88076 0.86154 0.75365 0.82589 0.83593 1.14611 1.12325 1.15250 1.71381 1.16436 1.26097 0.97203 1.22814 0.99330 0.89657 0.95607 0.80636 1.22151 1.00695 0.98106 0.98580 1.28041 0.94350 1.00654 0.94487 1.87689 1.44637 1.18463 1.09079 0.90303 0.88691 0.88833 0.72592 0.82514 0.76542 0.90268 0.87421 0.89576 0.76072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 3.57 9.65 37.16 0.36 3.92 16 2 C 0.13 -2.84 4.64 -3.94 -0.02 -2.85 16 3 H 0.14 -3.14 8.14 -51.93 -0.42 -3.56 16 4 N -0.73 16.49 5.78 -56.31 -0.33 16.17 16 5 C 0.13 -2.90 6.45 -85.41 -0.55 -3.45 16 6 C -0.03 0.77 5.91 -33.77 -0.20 0.57 16 7 S 0.20 -4.28 19.89 -107.50 -2.14 -6.41 16 8 C 0.10 -1.94 6.69 -13.82 -0.09 -2.03 16 9 C -0.05 0.91 3.08 36.01 0.11 1.02 16 10 O -0.50 7.77 12.75 -35.23 -0.45 7.32 16 11 Si 0.91 -15.65 26.71 -169.99 -4.54 -20.19 16 12 H -0.22 3.97 7.11 56.52 0.40 4.38 16 13 H -0.20 2.95 7.11 56.52 0.40 3.36 16 14 H -0.23 3.90 7.11 56.52 0.40 4.30 16 15 N -0.40 7.34 10.41 -52.94 -0.55 6.79 16 16 C 0.04 -0.89 3.47 -69.94 -0.24 -1.14 16 17 H 0.18 -4.14 8.14 -51.93 -0.42 -4.56 16 18 C -0.14 3.01 9.26 37.16 0.34 3.36 16 19 C -0.02 0.36 9.92 29.74 0.29 0.66 16 20 S 0.14 -3.07 22.78 -107.50 -2.45 -5.52 16 21 H 0.08 -1.60 8.14 -51.93 -0.42 -2.03 16 22 H 0.09 -1.94 8.14 -51.93 -0.42 -2.36 16 23 H 0.09 -1.94 8.14 -51.93 -0.42 -2.37 16 24 H 0.43 -9.95 8.25 -40.82 -0.34 -10.28 16 25 H 0.16 -2.99 7.96 -51.93 -0.41 -3.40 16 26 H 0.39 -7.19 8.70 45.56 0.40 -6.80 16 27 H 0.08 -1.67 8.14 -51.93 -0.42 -2.09 16 28 H 0.11 -2.22 8.14 -51.93 -0.42 -2.64 16 29 H 0.09 -2.11 5.41 -51.93 -0.28 -2.39 16 30 H 0.22 -6.00 6.13 -52.49 -0.32 -6.32 16 LS Contribution 272.15 15.07 4.10 4.10 Total: 1.00 -25.42 272.15 -9.06 -34.48 By element: Atomic # 1 Polarization: -34.07 SS G_CDS: -2.71 Total: -36.78 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 0.00 Total: 0.05 kcal Atomic # 7 Polarization: 23.83 SS G_CDS: -0.88 Total: 22.95 kcal Atomic # 8 Polarization: 7.77 SS G_CDS: -0.45 Total: 7.32 kcal Atomic # 14 Polarization: -15.65 SS G_CDS: -4.54 Total: -20.19 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -4.59 Total: -11.93 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.42 -9.06 -34.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725679766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.479 kcal (2) G-P(sol) polarization free energy of solvation -25.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds