Wall clock time and date at job start Fri Mar 20 2020 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.43165 * 2 1 4 4 N 1.46687 * 110.48931 * 237.45022 * 2 1 3 5 5 C 1.38448 * 114.27024 * 241.32304 * 4 2 1 6 6 C 1.39465 * 120.48714 * 179.97438 * 5 4 2 7 7 S 1.72026 * 127.56184 * 0.02620 * 6 5 4 8 8 C 1.76523 * 96.69223 * 179.97438 * 7 6 5 9 9 C 1.50704 * 125.24382 * 179.97438 * 8 7 6 10 10 O 1.42902 * 109.47087 * 210.03235 * 9 8 7 11 11 Si 1.86301 * 109.47169 * 330.02959 * 9 8 7 12 12 H 1.48497 * 109.47000 * 59.99662 * 11 9 8 13 13 H 1.48498 * 109.46982 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47328 * 299.99975 * 11 9 8 15 15 N 1.28141 * 109.51217 * 0.02562 * 8 7 6 16 16 C 1.44751 * 117.29543 * 359.69924 * 15 8 7 17 17 H 1.08999 * 109.21450 * 239.84139 * 16 15 8 18 18 C 1.53002 * 108.90886 * 120.98413 * 16 15 8 19 19 C 1.35454 * 119.02672 * 0.02562 * 5 4 2 20 20 S 1.77470 * 107.53274 * 359.93153 * 19 5 4 21 21 H 1.09005 * 109.46741 * 180.69993 * 1 2 3 22 22 H 1.08996 * 109.47202 * 300.70229 * 1 2 3 23 23 H 1.08998 * 109.46951 * 60.70346 * 1 2 3 24 24 H 0.97000 * 122.86066 * 61.29085 * 4 2 1 25 25 H 1.08997 * 109.47115 * 90.02707 * 9 8 7 26 26 H 0.96697 * 114.00046 * 59.99856 * 10 9 8 27 27 H 1.09004 * 109.46974 * 297.96472 * 18 16 15 28 28 H 1.08996 * 109.47583 * 57.96459 * 18 16 15 29 29 H 1.08998 * 109.47321 * 177.96927 * 18 16 15 30 30 H 1.07993 * 126.23719 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 7 2.0435 -0.7393 -1.1582 5 6 2.8100 -1.8454 -0.8331 6 6 3.3628 -2.6425 -1.8352 7 16 3.2210 -2.4362 -3.5371 8 6 4.1924 -3.8369 -3.9958 9 6 4.4889 -4.2640 -5.4103 10 8 4.6523 -5.6829 -5.4551 11 14 3.0763 -3.7663 -6.5183 12 1 2.9064 -2.2918 -6.4717 13 1 3.3688 -4.1866 -7.9122 14 1 1.8280 -4.4232 -6.0543 15 7 4.6057 -4.4352 -2.9407 16 6 4.2214 -3.8712 -1.6642 17 1 5.1183 -3.6033 -1.1058 18 6 3.4393 -4.9217 -0.8732 19 6 3.0144 -2.1427 0.4725 20 16 2.1669 -0.9187 1.4385 21 1 -0.3633 -1.0277 0.0126 22 1 -0.3633 0.5247 0.8836 23 1 -0.3633 0.5029 -0.8962 24 1 1.8611 -0.4759 -2.0738 25 1 5.4051 -3.7818 -5.7510 26 1 3.8739 -6.1778 -5.1648 27 1 2.5302 -5.1823 -1.4153 28 1 4.0542 -5.8127 -0.7457 29 1 3.1763 -4.5188 0.1048 30 1 3.5897 -2.9724 0.8559 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725679766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:58:58 Heat of formation + Delta-G solvation = 160.501517 kcal Electronic energy + Delta-G solvation = -15366.161132 eV Core-core repulsion = 12808.026962 eV Total energy + Delta-G solvation = -2558.134170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.28242 -39.96613 -38.01134 -35.22692 -32.85739 -30.53879 -29.55429 -28.83558 -25.08234 -24.02819 -22.89493 -21.23685 -20.64591 -18.73661 -18.59201 -17.87613 -17.21730 -16.71087 -16.61977 -16.34235 -15.96849 -15.70101 -15.29895 -14.88915 -14.73644 -14.04739 -13.71739 -13.32902 -13.27542 -13.10135 -12.98847 -12.82982 -12.45201 -12.32485 -12.17535 -12.03662 -11.37077 -11.25715 -11.11407 -10.79793 -8.63803 -2.88583 -1.04226 -0.42403 -0.22679 -0.18979 0.13468 0.38162 0.80855 1.27567 1.31948 1.35169 1.82640 2.23704 2.25811 2.93776 3.08269 3.31237 3.35822 3.47666 3.50271 3.66992 3.72703 3.79970 4.24039 4.43631 4.46844 4.47879 4.59418 4.99246 5.06974 5.08787 5.49268 5.90001 6.41351 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.006955 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.214070 B = 4024.917532 C = 4643.213790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 H 0.146 0.854 4 N -0.737 5.737 5 C 0.125 3.875 6 C -0.026 4.026 7 S 0.193 5.807 8 C 0.098 3.902 9 C -0.047 4.047 10 O -0.532 6.532 11 Si 0.931 3.069 12 H -0.211 1.211 13 H -0.248 1.248 14 H -0.236 1.236 15 N -0.433 5.433 16 C 0.042 3.958 17 H 0.196 0.804 18 C -0.138 4.138 19 C 0.017 3.983 20 S 0.120 5.880 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.434 0.566 25 H 0.163 0.837 26 H 0.395 0.605 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 3.997 6.473 7.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.083 4.083 3 H 0.163 0.837 4 N -0.378 5.378 5 C 0.007 3.993 6 C -0.174 4.174 7 S 0.455 5.545 8 C -0.202 4.202 9 C -0.161 4.161 10 O -0.338 6.338 11 Si 0.748 3.252 12 H -0.133 1.133 13 H -0.171 1.171 14 H -0.158 1.158 15 N -0.143 5.143 16 C -0.073 4.073 17 H 0.212 0.788 18 C -0.196 4.196 19 C -0.142 4.142 20 S 0.381 5.619 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.109 0.891 24 H 0.277 0.723 25 H 0.180 0.820 26 H 0.245 0.755 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.803 4.905 6.675 8.745 hybrid contribution 0.239 -0.720 -0.603 0.969 sum -2.563 4.185 6.072 7.808 Atomic orbital electron populations 1.22437 0.90354 1.04680 1.05505 1.24462 0.99517 0.99949 0.84344 0.83671 1.44916 1.56271 1.27057 1.09508 1.15671 1.00056 0.92153 0.91421 1.27270 0.93039 0.96870 1.00211 1.85194 1.46846 1.28144 0.94298 1.29567 0.95779 0.93920 1.00949 1.25185 1.14111 0.86698 0.90086 1.86646 1.44352 1.14290 1.88496 0.85831 0.75475 0.83064 0.80790 1.13345 1.17108 1.15813 1.71346 1.17287 1.27284 0.98390 1.22873 1.00239 0.89818 0.94363 0.78780 1.22206 0.99885 0.97759 0.99771 1.28555 0.92264 0.99987 0.93431 1.87877 1.44970 1.19369 1.09732 0.90757 0.89269 0.89096 0.72324 0.81950 0.75468 0.91223 0.88812 0.86718 0.72848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 6.93 9.65 71.98 0.69 7.62 16 2 C 0.13 -5.76 4.64 86.35 0.40 -5.36 16 3 H 0.15 -6.53 8.14 -2.39 -0.02 -6.55 16 4 N -0.74 32.79 5.78 -332.05 -1.92 30.87 16 5 C 0.12 -5.75 6.45 37.75 0.24 -5.50 16 6 C -0.03 1.14 5.91 26.03 0.15 1.30 16 7 S 0.19 -7.81 19.89 -56.49 -1.12 -8.93 16 8 C 0.10 -3.48 6.69 88.65 0.59 -2.89 16 9 C -0.05 1.56 3.08 71.24 0.22 1.78 16 10 O -0.53 14.70 12.75 -148.98 -1.90 12.80 16 11 Si 0.93 -29.21 26.71 68.60 1.83 -27.37 16 12 H -0.21 7.09 7.11 99.48 0.71 7.80 16 13 H -0.25 6.07 7.11 99.48 0.71 6.78 16 14 H -0.24 7.29 7.11 99.48 0.71 8.00 16 15 N -0.43 15.05 10.41 -321.37 -3.35 11.70 16 16 C 0.04 -1.79 3.47 44.62 0.15 -1.63 16 17 H 0.20 -9.22 8.14 -2.39 -0.02 -9.24 16 18 C -0.14 6.02 9.26 71.98 0.67 6.68 16 19 C 0.02 -0.81 9.92 67.18 0.67 -0.14 16 20 S 0.12 -5.26 22.78 -56.49 -1.29 -6.54 16 21 H 0.07 -2.93 8.14 -2.38 -0.02 -2.95 16 22 H 0.09 -3.50 8.14 -2.39 -0.02 -3.52 16 23 H 0.09 -3.64 8.14 -2.39 -0.02 -3.66 16 24 H 0.43 -19.61 8.25 -92.71 -0.77 -20.38 16 25 H 0.16 -5.72 7.96 -2.39 -0.02 -5.74 16 26 H 0.40 -13.38 8.70 -74.06 -0.64 -14.03 16 27 H 0.07 -2.85 8.14 -2.38 -0.02 -2.87 16 28 H 0.09 -3.76 8.14 -2.39 -0.02 -3.78 16 29 H 0.11 -5.78 5.41 -2.39 -0.01 -5.80 16 30 H 0.26 -14.36 6.13 -2.91 -0.02 -14.38 16 Total: 1.00 -52.51 272.15 -3.43 -55.94 By element: Atomic # 1 Polarization: -70.84 SS G_CDS: 0.53 Total: -70.31 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 3.79 Total: 1.85 kcal Atomic # 7 Polarization: 47.83 SS G_CDS: -5.27 Total: 42.57 kcal Atomic # 8 Polarization: 14.70 SS G_CDS: -1.90 Total: 12.80 kcal Atomic # 14 Polarization: -29.21 SS G_CDS: 1.83 Total: -27.37 kcal Atomic # 16 Polarization: -13.06 SS G_CDS: -2.41 Total: -15.47 kcal Total: -52.51 -3.43 -55.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725679766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.437 kcal (2) G-P(sol) polarization free energy of solvation -52.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds