Wall clock time and date at job start Fri Mar 20 2020 13:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.53978 * 2 1 4 4 N 1.46681 * 110.48963 * 122.61935 * 2 1 3 5 5 C 1.38459 * 114.26731 * 118.67554 * 4 2 1 6 6 C 1.39465 * 120.48259 * 180.02562 * 5 4 2 7 7 S 1.72028 * 127.56682 * 359.97438 * 6 5 4 8 8 C 1.76514 * 96.69535 * 180.02562 * 7 6 5 9 9 C 1.50708 * 125.24266 * 180.02562 * 8 7 6 10 10 O 1.42900 * 109.47034 * 154.97465 * 9 8 7 11 11 Si 1.86295 * 109.47274 * 34.97283 * 9 8 7 12 12 H 1.48501 * 109.46916 * 59.99926 * 11 9 8 13 13 H 1.48501 * 109.47203 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47195 * 300.00178 * 11 9 8 15 15 N 1.28150 * 109.51388 * 359.97438 * 8 7 6 16 16 C 1.44748 * 117.29293 * 0.02562 * 15 8 7 17 17 H 1.09002 * 109.06038 * 120.56664 * 16 15 8 18 18 C 1.52994 * 108.96621 * 239.48938 * 16 15 8 19 19 C 1.35443 * 119.02814 * 0.27126 * 5 4 2 20 20 S 1.77087 * 107.52379 * 359.60190 * 19 5 4 21 21 H 1.09002 * 109.47061 * 297.37867 * 1 2 3 22 22 H 1.09001 * 109.47269 * 57.37985 * 1 2 3 23 23 H 1.08996 * 109.46682 * 177.38114 * 1 2 3 24 24 H 0.96997 * 122.86513 * 298.63766 * 4 2 1 25 25 H 1.09002 * 109.46938 * 274.97045 * 9 8 7 26 26 H 0.96702 * 113.99786 * 299.99741 * 10 9 8 27 27 H 1.09001 * 109.47394 * 180.36200 * 18 16 15 28 28 H 1.09002 * 109.47504 * 300.36315 * 18 16 15 29 29 H 1.09002 * 109.47623 * 60.35956 * 18 16 15 30 30 H 1.08000 * 126.23596 * 179.70358 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 7 2.0435 -0.7407 1.1573 5 6 2.8100 -1.8465 0.8307 6 6 3.3628 -2.6448 1.8318 7 16 3.2211 -2.4406 3.5341 8 6 4.1924 -3.8418 3.9910 9 6 4.4889 -4.2706 5.4051 10 8 4.7671 -5.6720 5.4294 11 14 3.0141 -3.9114 6.4851 12 1 1.8354 -4.6589 5.9780 13 1 3.3061 -4.3345 7.8783 14 1 2.7250 -2.4551 6.4599 15 7 4.6057 -4.4388 2.9352 16 6 4.2163 -3.8768 1.6594 17 1 5.1127 -3.6132 1.0980 18 6 3.4263 -4.9257 0.8742 19 6 3.0194 -2.1386 -0.4751 20 16 2.1678 -0.9200 -1.4373 21 1 -0.3633 0.4726 0.9126 22 1 -0.3634 0.5540 -0.8656 23 1 -0.3632 -1.0266 -0.0470 24 1 1.8620 -0.4779 2.0732 25 1 5.3541 -3.7219 5.7773 26 1 4.0392 -6.2231 5.1108 27 1 3.1342 -4.5130 -0.0914 28 1 4.0477 -5.8078 0.7193 29 1 2.5342 -5.2038 1.4353 30 1 3.5986 -2.9652 -0.8595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725679768.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 20 2020 13:59:07 Heat of formation + Delta-G solvation = 159.919901 kcal Electronic energy + Delta-G solvation = -15365.833282 eV Core-core repulsion = 12807.673891 eV Total energy + Delta-G solvation = -2558.159391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28238 -39.96949 -38.00497 -35.22116 -32.85420 -30.54294 -29.54959 -28.84579 -25.08501 -24.02799 -22.89320 -21.22262 -20.64840 -18.72619 -18.60459 -17.89934 -17.19689 -16.69330 -16.61969 -16.34015 -15.96653 -15.70078 -15.28574 -14.89050 -14.74028 -14.05333 -13.71407 -13.33572 -13.29746 -13.09847 -12.99872 -12.82903 -12.43781 -12.32732 -12.15814 -12.03404 -11.38509 -11.26108 -11.11667 -10.78335 -8.63444 -2.88250 -1.03638 -0.42928 -0.22725 -0.17884 0.13891 0.38095 0.82248 1.28009 1.32170 1.35350 1.82753 2.23338 2.25955 2.94076 3.08468 3.31526 3.36157 3.47733 3.50651 3.67433 3.72644 3.79900 4.23284 4.43282 4.47233 4.47836 4.59505 4.99111 5.07039 5.08936 5.49679 5.89993 6.41210 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.006927 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.626620 B = 4040.920795 C = 4645.096566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 H 0.146 0.854 4 N -0.737 5.737 5 C 0.124 3.876 6 C -0.027 4.027 7 S 0.195 5.805 8 C 0.097 3.903 9 C -0.048 4.048 10 O -0.531 6.531 11 Si 0.936 3.064 12 H -0.239 1.239 13 H -0.249 1.249 14 H -0.211 1.211 15 N -0.436 5.436 16 C 0.043 3.957 17 H 0.195 0.805 18 C -0.137 4.137 19 C 0.014 3.986 20 S 0.126 5.874 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.434 0.566 25 H 0.164 0.836 26 H 0.395 0.605 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 4.061 -6.522 8.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.083 4.083 3 H 0.164 0.836 4 N -0.378 5.378 5 C 0.007 3.993 6 C -0.175 4.175 7 S 0.457 5.543 8 C -0.203 4.203 9 C -0.162 4.162 10 O -0.338 6.338 11 Si 0.753 3.247 12 H -0.161 1.161 13 H -0.173 1.173 14 H -0.134 1.134 15 N -0.145 5.145 16 C -0.072 4.072 17 H 0.211 0.789 18 C -0.196 4.196 19 C -0.145 4.145 20 S 0.386 5.614 21 H 0.109 0.891 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.277 0.723 25 H 0.181 0.819 26 H 0.245 0.755 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.931 4.943 -6.722 8.844 hybrid contribution 0.286 -0.729 0.598 0.985 sum -2.645 4.214 -6.124 7.891 Atomic orbital electron populations 1.22434 0.90322 1.04680 1.05533 1.24485 0.99539 0.99941 0.84355 0.83638 1.44923 1.56317 1.27019 1.09521 1.15671 1.00028 0.92211 0.91428 1.27260 0.93125 0.96951 1.00205 1.85174 1.46828 1.28046 0.94257 1.29580 0.95720 0.94023 1.00958 1.25201 1.14025 0.86875 0.90068 1.86639 1.45825 1.13917 1.87387 0.85785 0.74603 0.83551 0.80726 1.16133 1.17251 1.13381 1.71336 1.17389 1.27457 0.98357 1.22859 1.00221 0.89747 0.94388 0.78877 1.22203 0.99807 0.97794 0.99800 1.28502 0.92400 1.00039 0.93514 1.87799 1.44398 1.19461 1.09735 0.89092 0.89236 0.90756 0.72327 0.81858 0.75476 0.86783 0.88750 0.91274 0.72829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 6.94 9.65 71.98 0.69 7.63 16 2 C 0.13 -5.75 4.64 86.35 0.40 -5.35 16 3 H 0.15 -6.56 8.14 -2.39 -0.02 -6.58 16 4 N -0.74 32.82 5.78 -332.05 -1.92 30.90 16 5 C 0.12 -5.73 6.45 37.75 0.24 -5.49 16 6 C -0.03 1.21 5.90 26.03 0.15 1.36 16 7 S 0.20 -7.87 20.08 -56.49 -1.13 -9.01 16 8 C 0.10 -3.45 6.64 88.65 0.59 -2.86 16 9 C -0.05 1.59 3.08 71.24 0.22 1.81 16 10 O -0.53 14.61 12.71 -148.98 -1.89 12.71 16 11 Si 0.94 -29.22 26.86 68.60 1.84 -27.38 16 12 H -0.24 7.28 7.11 99.48 0.71 7.98 16 13 H -0.25 6.08 7.11 99.48 0.71 6.78 16 14 H -0.21 7.10 7.11 99.48 0.71 7.80 16 15 N -0.44 15.11 10.36 -321.38 -3.33 11.78 16 16 C 0.04 -1.82 3.46 44.62 0.15 -1.66 16 17 H 0.20 -9.15 8.14 -2.39 -0.02 -9.17 16 18 C -0.14 6.00 9.28 71.98 0.67 6.67 16 19 C 0.01 -0.70 9.85 67.17 0.66 -0.04 16 20 S 0.13 -5.51 22.76 -56.49 -1.29 -6.79 16 21 H 0.09 -3.65 8.14 -2.39 -0.02 -3.67 16 22 H 0.09 -3.53 8.14 -2.39 -0.02 -3.55 16 23 H 0.07 -2.94 8.14 -2.39 -0.02 -2.96 16 24 H 0.43 -19.62 8.25 -92.71 -0.77 -20.38 16 25 H 0.16 -5.78 7.96 -2.39 -0.02 -5.80 16 26 H 0.40 -13.22 8.70 -74.06 -0.64 -13.87 16 27 H 0.11 -5.74 5.43 -2.39 -0.01 -5.75 16 28 H 0.09 -3.80 8.14 -2.39 -0.02 -3.82 16 29 H 0.07 -2.82 8.14 -2.39 -0.02 -2.84 16 30 H 0.26 -14.38 6.22 -2.91 -0.02 -14.39 16 Total: 1.00 -52.49 272.38 -3.41 -55.90 By element: Atomic # 1 Polarization: -70.72 SS G_CDS: 0.53 Total: -70.19 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 3.79 Total: 2.07 kcal Atomic # 7 Polarization: 47.93 SS G_CDS: -5.25 Total: 42.68 kcal Atomic # 8 Polarization: 14.61 SS G_CDS: -1.89 Total: 12.71 kcal Atomic # 14 Polarization: -29.22 SS G_CDS: 1.84 Total: -27.38 kcal Atomic # 16 Polarization: -13.38 SS G_CDS: -2.42 Total: -15.80 kcal Total: -52.49 -3.41 -55.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725679768.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.823 kcal (2) G-P(sol) polarization free energy of solvation -52.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds