Wall clock time and date at job start Tue Mar 17 2020 17:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 N 1.46499 * 109.46705 * 175.06708 * 3 2 1 5 5 C 1.29311 * 119.99793 * 147.19366 * 4 3 2 6 6 C 1.47626 * 119.99950 * 34.94460 * 5 4 3 7 7 C 1.40024 * 120.56594 * 5.45133 * 6 5 4 8 8 C 1.38387 * 118.28114 * 180.02562 * 7 6 5 9 9 C 1.38308 * 119.31491 * 359.97438 * 8 7 6 10 10 N 1.31949 * 121.09601 * 0.02562 * 9 8 7 11 11 C 1.31666 * 121.88599 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.72118 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46911 * 132.78144 * 12 11 10 14 14 Si 1.86296 * 109.47365 * 12.77338 * 12 11 10 15 15 H 1.48505 * 109.46913 * 64.90862 * 14 12 11 16 16 H 1.48502 * 109.46869 * 184.90147 * 14 12 11 17 17 H 1.48498 * 109.47390 * 304.90675 * 14 12 11 18 18 H 1.08995 * 109.47371 * 184.94310 * 1 2 3 19 19 H 1.09000 * 109.47132 * 304.95053 * 1 2 3 20 20 H 1.09004 * 109.46986 * 64.94525 * 1 2 3 21 21 H 1.08994 * 109.47145 * 239.99495 * 2 1 3 22 22 H 1.09003 * 109.46275 * 120.00161 * 2 1 3 23 23 H 1.09000 * 109.47365 * 55.07448 * 3 2 1 24 24 H 1.08993 * 109.47143 * 295.06881 * 3 2 1 25 25 H 1.08002 * 120.00143 * 214.93945 * 5 4 3 26 26 H 1.07991 * 120.86055 * 0.04185 * 7 6 5 27 27 H 1.08002 * 120.34350 * 179.97438 * 8 7 6 28 28 H 1.08006 * 119.45357 * 179.72843 * 9 8 7 29 29 H 1.09001 * 109.46838 * 252.77335 * 12 11 10 30 30 H 0.96707 * 113.99868 * 304.23854 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4441 0.1188 5 6 4.1950 2.3682 -0.4603 6 6 3.6611 3.7411 -0.5580 7 6 2.4572 4.0833 0.0699 8 6 2.0002 5.3838 -0.0530 9 6 2.7399 6.2953 -0.7844 10 7 3.8714 5.9447 -1.3656 11 6 4.3480 4.7204 -1.2781 12 6 5.6458 4.3734 -1.9610 13 8 6.4847 3.6562 -1.0534 14 14 6.5040 5.9381 -2.4958 15 1 6.8872 6.7269 -1.2972 16 1 7.7223 5.5939 -3.2720 17 1 5.5868 6.7407 -3.3441 18 1 -0.3634 -1.0238 0.0885 19 1 -0.3633 0.5887 0.8423 20 1 -0.3633 0.4352 -0.9310 21 1 1.8933 -0.5139 -0.8899 22 1 1.8932 -0.5139 0.8900 23 1 1.6065 1.9812 0.8426 24 1 1.7506 1.9301 -0.9308 25 1 5.1658 2.1358 -0.8724 26 1 1.8999 3.3515 0.6356 27 1 1.0754 5.6838 0.4173 28 1 2.3830 7.3096 -0.8854 29 1 5.4424 3.7539 -2.8345 30 1 6.6542 4.1218 -0.2229 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146205327.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:04:42 Heat of formation + Delta-G solvation = 24.751986 kcal Electronic energy + Delta-G solvation = -13639.850587 eV Core-core repulsion = 11323.171022 eV Total energy + Delta-G solvation = -2316.679565 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72567 -38.23600 -38.00164 -34.69775 -33.53135 -32.14459 -28.31471 -27.48451 -25.12071 -23.46876 -22.42401 -21.09978 -18.89555 -17.82541 -17.30971 -16.94302 -16.62782 -16.42115 -15.59804 -15.41926 -15.00993 -14.72117 -14.34287 -14.14728 -13.68285 -13.52597 -12.73908 -12.56542 -12.23519 -12.07917 -12.00151 -11.84278 -11.46361 -11.12821 -11.02380 -10.33895 -10.17725 -9.44119 -0.58742 -0.01570 1.18403 1.22018 1.63923 1.74047 2.11569 2.59732 2.93988 3.18629 3.39500 3.51677 3.63605 3.75456 3.87092 4.01260 4.06830 4.26555 4.33919 4.38008 4.49031 4.52403 4.58409 4.73152 4.79393 4.92310 5.08446 5.19005 5.31986 5.39494 5.43326 6.32298 6.69292 6.80047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C 0.038 3.962 4 N -0.533 5.533 5 C 0.199 3.801 6 C -0.150 4.150 7 C -0.077 4.077 8 C -0.168 4.168 9 C 0.119 3.881 10 N -0.482 5.482 11 C 0.122 3.878 12 C -0.083 4.083 13 O -0.534 6.534 14 Si 0.995 3.005 15 H -0.259 1.259 16 H -0.265 1.265 17 H -0.248 1.248 18 H 0.061 0.939 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.185 0.815 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.130 0.870 30 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 1.333 0.079 2.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.090 4.090 4 N -0.240 5.240 5 C -0.010 4.010 6 C -0.154 4.154 7 C -0.104 4.104 8 C -0.188 4.188 9 C -0.038 4.038 10 N -0.193 5.193 11 C -0.020 4.020 12 C -0.193 4.193 13 O -0.339 6.339 14 Si 0.817 3.183 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.172 1.172 18 H 0.080 0.920 19 H 0.073 0.927 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.201 0.799 26 H 0.168 0.832 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.147 0.853 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.229 1.379 -0.563 1.931 hybrid contribution -1.358 0.286 0.976 1.697 sum -2.587 1.665 0.413 3.104 Atomic orbital electron populations 1.21773 0.95206 1.02343 1.01795 1.21423 0.95183 0.95264 1.03268 1.22600 0.87664 0.98357 1.00330 1.71540 1.08043 1.34358 1.10031 1.25485 1.01514 0.86928 0.87025 1.21106 0.96207 0.97375 1.00751 1.22636 0.94401 0.97516 0.95838 1.22182 1.01845 0.93911 1.00869 1.22899 0.89325 1.00150 0.91437 1.67133 1.13997 1.18283 1.19892 1.22016 0.96753 0.88894 0.94290 1.25136 0.89069 1.09566 0.95520 1.86460 1.68175 1.47530 1.31750 0.84846 0.78167 0.74243 0.81088 1.18257 1.18962 1.17170 0.91976 0.92689 0.92692 0.91470 0.91062 0.91274 0.91868 0.79862 0.83184 0.84030 0.81900 0.85255 0.76963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 9.91 37.16 0.37 0.50 16 2 C -0.11 -0.05 6.26 -26.73 -0.17 -0.21 16 3 C 0.04 0.02 4.34 -4.04 -0.02 0.00 16 4 N -0.53 -1.18 10.52 -59.04 -0.62 -1.80 16 5 C 0.20 0.15 10.00 -14.78 -0.15 0.01 16 6 C -0.15 -0.07 5.58 -104.88 -0.59 -0.65 16 7 C -0.08 0.02 8.48 -38.86 -0.33 -0.31 16 8 C -0.17 0.21 10.10 -39.50 -0.40 -0.19 16 9 C 0.12 -0.06 11.17 -17.48 -0.20 -0.26 16 10 N -0.48 -0.61 7.95 -9.13 -0.07 -0.68 16 11 C 0.12 0.05 6.17 -82.15 -0.51 -0.45 16 12 C -0.08 0.08 2.38 36.00 0.09 0.17 16 13 O -0.53 0.81 10.01 -35.23 -0.35 0.46 16 14 Si 1.00 0.13 27.00 -169.99 -4.59 -4.45 16 15 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 16 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 17 H -0.25 -0.42 7.11 56.52 0.40 -0.01 16 18 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 19 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 20 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 21 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 22 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 23 H 0.07 -0.02 5.89 -51.93 -0.31 -0.33 16 24 H 0.06 0.02 7.17 -51.93 -0.37 -0.36 16 25 H 0.18 -0.03 5.65 -52.49 -0.30 -0.33 16 26 H 0.15 -0.14 4.12 -52.49 -0.22 -0.36 16 27 H 0.14 -0.51 8.06 -52.49 -0.42 -0.93 16 28 H 0.16 -0.50 8.06 -52.48 -0.42 -0.92 16 29 H 0.13 -0.31 7.96 -51.93 -0.41 -0.72 16 30 H 0.38 -1.53 8.75 45.56 0.40 -1.13 16 LS Contribution 247.57 15.07 3.73 3.73 Total: 0.00 -4.42 247.57 -6.76 -11.18 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -2.96 Total: -7.04 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.89 Total: -1.40 kcal Atomic # 7 Polarization: -1.79 SS G_CDS: -0.69 Total: -2.48 kcal Atomic # 8 Polarization: 0.81 SS G_CDS: -0.35 Total: 0.46 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: -4.59 Total: -4.45 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -4.42 -6.76 -11.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146205327.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.931 kcal (2) G-P(sol) polarization free energy of solvation -4.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds