Wall clock time and date at job start Tue Mar 17 2020 18:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00175 * 2 1 4 4 O 1.20823 * 119.99747 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00010 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.48627 * 64.68177 * 5 3 2 7 7 C 1.53138 * 109.49103 * 304.63717 * 5 3 2 8 8 C 1.53376 * 108.82721 * 240.03408 * 7 5 3 9 9 H 1.09001 * 110.11213 * 180.39895 * 8 7 5 10 10 C 1.53394 * 108.59802 * 301.03526 * 8 7 5 11 11 C 1.53124 * 108.84212 * 59.00323 * 10 8 7 12 12 N 1.46905 * 109.48780 * 184.71937 * 5 3 2 13 13 C 1.46942 * 111.05477 * 57.97085 * 12 5 3 14 14 C 1.53389 * 108.60202 * 59.75628 * 8 7 5 15 15 H 1.09002 * 109.57860 * 181.18984 * 14 8 7 16 16 C 1.53011 * 109.57309 * 60.80740 * 14 8 7 17 17 O 1.42898 * 109.47106 * 174.89708 * 16 14 8 18 18 Si 1.86294 * 109.46994 * 54.89621 * 16 14 8 19 19 H 1.48508 * 109.47276 * 60.00348 * 18 16 14 20 20 H 1.48505 * 109.47110 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47464 * 300.00253 * 18 16 14 22 22 H 1.08998 * 109.47532 * 300.00039 * 1 2 3 23 23 H 1.08999 * 109.47613 * 60.00121 * 1 2 3 24 24 H 1.09009 * 109.47447 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.57870 * 359.83851 * 7 5 3 26 26 H 1.09002 * 109.57721 * 120.09290 * 7 5 3 27 27 H 1.09003 * 109.57220 * 178.80873 * 10 8 7 28 28 H 1.08998 * 109.57648 * 299.18868 * 10 8 7 29 29 H 1.09001 * 109.49189 * 119.90655 * 11 10 8 30 30 H 1.09007 * 109.48788 * 239.95302 * 11 10 8 31 31 H 1.08999 * 109.49515 * 181.92362 * 13 12 5 32 32 H 1.09003 * 109.49489 * 301.97173 * 13 12 5 33 33 H 1.09001 * 109.46992 * 294.89684 * 16 14 8 34 34 H 0.96699 * 114.00054 * 294.57726 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9528 0.8548 -0.9280 7 6 4.1190 0.4824 1.1887 8 6 4.9188 1.4328 2.0885 9 1 5.3284 0.8877 2.9390 10 6 6.0536 2.0503 1.2616 11 6 5.4473 2.7998 0.0719 12 7 3.9835 2.6788 0.1144 13 6 3.4406 3.2936 1.3336 14 6 3.9841 2.5468 2.5766 15 1 4.5422 3.2442 3.2014 16 6 2.8367 1.9363 3.3840 17 8 2.0344 2.9815 3.9369 18 14 3.5331 0.8931 4.7615 19 1 4.3679 1.7404 5.6506 20 1 2.4195 0.3010 5.5455 21 1 4.3669 -0.1931 4.1869 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.2940 0.0507 1.7554 26 1 4.7690 -0.3139 0.8260 27 1 6.6201 2.7456 1.8810 28 1 6.7123 1.2612 0.8989 29 1 5.7269 3.8520 0.1242 30 1 5.8209 2.3699 -0.8575 31 1 3.7366 4.3418 1.3752 32 1 2.3529 3.2231 1.3233 33 1 2.2239 1.3144 2.7314 34 1 2.4933 3.5250 4.5920 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307576615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:01:25 Heat of formation + Delta-G solvation = -109.046028 kcal Electronic energy + Delta-G solvation = -18155.190847 eV Core-core repulsion = 15361.685554 eV Total energy + Delta-G solvation = -2793.505293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65384 -40.66335 -37.85943 -37.34165 -33.75442 -32.81160 -32.23557 -28.68107 -26.64786 -25.22859 -24.25746 -22.92822 -21.95847 -19.20325 -18.52431 -18.28028 -17.90855 -17.44498 -16.97501 -16.80379 -16.09195 -15.62984 -15.39038 -14.52344 -14.43890 -14.21927 -14.03966 -13.81323 -13.40676 -13.23882 -13.02502 -12.93230 -12.88000 -12.58858 -12.23463 -11.93561 -11.74311 -11.68029 -11.48128 -11.25750 -10.84721 -10.38801 -9.23509 1.10608 1.26417 1.33441 1.41618 1.60732 1.85296 2.86838 3.21902 3.36973 3.54245 3.64958 3.76938 3.90151 3.97985 4.08394 4.10363 4.19861 4.21892 4.28931 4.29991 4.40437 4.50205 4.60519 4.65923 4.72763 4.88215 4.93189 4.98055 4.99758 5.10994 5.26355 5.49912 5.90929 6.01837 6.54408 6.85340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.480 6.480 5 C 0.095 3.905 6 H 0.123 0.877 7 C -0.145 4.145 8 C -0.099 4.099 9 H 0.088 0.912 10 C -0.149 4.149 11 C 0.054 3.946 12 N -0.511 5.511 13 C 0.047 3.953 14 C -0.149 4.149 15 H 0.084 0.916 16 C -0.107 4.107 17 O -0.539 6.539 18 Si 0.927 3.073 19 H -0.249 1.249 20 H -0.252 1.252 21 H -0.246 1.246 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -2.100 0.782 3.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.302 3.698 4 O -0.366 6.366 5 C -0.015 4.015 6 H 0.141 0.859 7 C -0.184 4.184 8 C -0.118 4.118 9 H 0.106 0.894 10 C -0.188 4.188 11 C -0.074 4.074 12 N -0.232 5.232 13 C -0.080 4.080 14 C -0.169 4.169 15 H 0.103 0.897 16 C -0.219 4.219 17 O -0.343 6.343 18 Si 0.749 3.251 19 H -0.172 1.172 20 H -0.175 1.175 21 H -0.169 1.169 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.328 -2.288 0.609 3.321 hybrid contribution 0.431 0.043 0.701 0.825 sum 2.759 -2.246 1.310 3.791 Atomic orbital electron populations 1.23323 0.75745 1.03966 1.02864 1.86477 1.23786 1.33197 1.84249 1.23489 0.91617 0.81611 0.73048 1.90645 1.66703 1.35904 1.43336 1.21288 0.87841 0.91082 1.01337 0.85915 1.22317 1.01116 0.98490 0.96494 1.21373 0.95719 0.96019 0.98688 0.89396 1.22275 0.97527 1.00837 0.98140 1.22278 0.85612 1.01541 0.97961 1.62303 1.10371 1.12382 1.38111 1.22917 1.02915 0.97666 0.84533 1.22761 0.96520 0.98280 0.99380 0.89745 1.26120 0.96722 0.95889 1.03154 1.86537 1.40642 1.46441 1.60681 0.86081 0.80297 0.80316 0.78390 1.17223 1.17537 1.16939 0.91676 0.91660 0.87841 0.90415 0.89438 0.90958 0.90806 0.89628 0.90083 0.90086 0.87127 0.88207 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.56 10.18 -39.26 -0.40 -0.96 16 3 C 0.46 1.19 5.99 36.00 0.22 1.41 16 4 O -0.48 -2.63 13.65 -18.75 -0.26 -2.88 16 5 C 0.09 0.03 2.93 -68.79 -0.20 -0.17 16 6 H 0.12 -0.14 8.14 -51.93 -0.42 -0.56 16 7 C -0.15 0.15 4.92 -26.46 -0.13 0.02 16 8 C -0.10 0.13 2.34 -90.02 -0.21 -0.08 16 9 H 0.09 -0.15 5.40 -51.93 -0.28 -0.43 16 10 C -0.15 0.31 5.77 -26.46 -0.15 0.16 16 11 C 0.05 -0.07 6.09 -3.74 -0.02 -0.09 16 12 N -0.51 -0.53 4.82 -226.59 -1.09 -1.62 16 13 C 0.05 0.07 5.26 -2.82 -0.01 0.05 16 14 C -0.15 0.09 1.75 -89.43 -0.16 -0.07 16 15 H 0.08 -0.15 8.08 -51.93 -0.42 -0.57 16 16 C -0.11 -0.01 1.67 37.16 0.06 0.06 16 17 O -0.54 -0.46 12.71 -35.23 -0.45 -0.91 16 18 Si 0.93 -0.40 25.60 -169.99 -4.35 -4.75 16 19 H -0.25 0.08 7.11 56.52 0.40 0.48 16 20 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 21 H -0.25 0.11 6.37 56.52 0.36 0.47 16 22 H 0.06 0.00 8.13 -51.93 -0.42 -0.42 16 23 H 0.06 0.00 8.13 -51.93 -0.42 -0.42 16 24 H 0.10 -0.28 8.14 -51.92 -0.42 -0.70 16 25 H 0.08 -0.05 5.35 -51.93 -0.28 -0.33 16 26 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 27 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 28 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.09 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.11 0.45 4.77 -51.93 -0.25 0.20 16 33 H 0.10 0.11 5.78 -51.93 -0.30 -0.19 16 34 H 0.37 -1.11 8.60 45.56 0.39 -0.72 16 LS Contribution 254.21 15.07 3.83 3.83 Total: 0.00 -4.95 254.21 -6.46 -11.41 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: -4.20 Total: -6.46 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.45 Total: 2.34 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -1.09 Total: -1.62 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -1.10 Total: -4.75 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -4.35 Total: -4.75 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -4.95 -6.46 -11.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307576615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.639 kcal (2) G-P(sol) polarization free energy of solvation -4.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds