Wall clock time and date at job start Tue Mar 17 2020 16:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47088 * 2 1 4 4 C 1.53002 * 109.47148 * 239.99760 * 2 1 3 5 5 C 1.50702 * 109.47086 * 120.00073 * 2 1 3 6 6 C 1.31987 * 119.99940 * 123.61178 * 5 2 1 7 7 N 1.38918 * 119.99663 * 308.39795 * 6 5 2 8 8 C 1.47148 * 120.98530 * 0.59543 * 7 6 5 9 9 C 1.53288 * 108.38867 * 129.73185 * 8 7 6 10 10 O 1.42959 * 109.22176 * 52.30262 * 9 8 7 11 11 C 1.42960 * 114.16714 * 297.41689 * 10 9 8 12 12 C 1.47149 * 120.97941 * 180.86685 * 7 6 5 13 13 C 1.50702 * 119.99790 * 303.60661 * 5 2 1 14 14 O 1.42905 * 109.46900 * 85.86077 * 13 5 2 15 15 Si 1.86298 * 109.46923 * 205.85749 * 13 5 2 16 16 H 1.48500 * 109.47167 * 60.00095 * 15 13 5 17 17 H 1.48499 * 109.47427 * 179.97438 * 15 13 5 18 18 H 1.48499 * 109.47415 * 300.00140 * 15 13 5 19 19 H 1.08998 * 109.47266 * 344.32387 * 1 2 3 20 20 H 1.08999 * 109.47386 * 104.32517 * 1 2 3 21 21 H 1.08999 * 109.47323 * 224.32171 * 1 2 3 22 22 H 1.09000 * 109.46866 * 179.50726 * 3 2 1 23 23 H 1.09001 * 109.47131 * 299.50238 * 3 2 1 24 24 H 1.08998 * 109.46938 * 59.50281 * 3 2 1 25 25 H 1.08990 * 109.47394 * 256.84693 * 4 2 1 26 26 H 1.09003 * 109.46996 * 16.84754 * 4 2 1 27 27 H 1.09000 * 109.46986 * 136.84625 * 4 2 1 28 28 H 1.07994 * 120.00082 * 128.40937 * 6 5 2 29 29 H 1.09007 * 109.67970 * 249.46066 * 8 7 6 30 30 H 1.09007 * 109.68034 * 10.00411 * 8 7 6 31 31 H 1.08997 * 109.51326 * 292.38080 * 9 8 7 32 32 H 1.08997 * 109.51411 * 172.22302 * 9 8 7 33 33 H 1.08997 * 109.51869 * 302.65879 * 11 10 9 34 34 H 1.09003 * 109.55734 * 182.52611 * 11 10 9 35 35 H 1.09005 * 109.68342 * 349.99016 * 12 7 6 36 36 H 1.09004 * 109.68181 * 110.54236 * 12 7 6 37 37 H 1.08994 * 109.47397 * 325.85865 * 13 5 2 38 38 H 0.96691 * 113.99571 * 306.20952 * 14 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.8488 -1.7405 1.1107 7 7 2.5174 -2.7953 0.2696 8 6 1.2680 -2.7807 -0.5076 9 6 1.6039 -3.0986 -1.9690 10 8 2.3719 -4.3032 -2.0242 11 6 3.6346 -4.2233 -1.3586 12 6 3.4026 -3.9629 0.1342 13 6 1.6024 -0.2447 2.5977 14 8 0.3578 -0.8578 2.9402 15 14 2.8954 -0.7216 3.8512 16 1 4.1887 -0.0845 3.4952 17 1 2.4722 -0.2622 5.1984 18 1 3.0565 -2.1978 3.8591 19 1 -0.3634 0.9894 0.2777 20 1 -0.3634 -0.2543 -0.9957 21 1 -0.3634 -0.7352 0.7180 22 1 3.1299 1.4425 0.0088 23 1 1.6839 1.9538 -0.8944 24 1 1.6693 1.9589 0.8855 25 1 2.3815 -1.7202 -0.9781 26 1 1.2337 -0.7986 -1.9787 27 1 2.8679 -0.1589 -1.6809 28 1 3.7744 -1.7633 1.6666 29 1 0.5834 -3.5333 -0.1161 30 1 0.8069 -1.7951 -0.4429 31 1 2.1813 -2.2789 -2.3965 32 1 0.6813 -3.2289 -2.5346 33 1 4.2194 -3.4076 -1.7838 34 1 4.1737 -5.1622 -1.4849 35 1 4.3552 -3.7602 0.6238 36 1 2.9330 -4.8345 0.5902 37 1 1.4841 0.8388 2.5919 38 1 -0.3377 -0.7312 2.2806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000206701082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 16:51:59 Heat of formation + Delta-G solvation = 47.952312 kcal Electronic energy + Delta-G solvation = -18455.581951 eV Core-core repulsion = 15804.717712 eV Total energy + Delta-G solvation = -2650.864240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.159 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.52357 -39.27153 -37.14480 -36.02863 -33.33415 -32.24080 -28.44528 -28.22836 -27.91212 -25.26163 -24.86948 -22.96775 -21.23581 -19.41710 -18.16457 -17.86328 -17.36095 -16.94113 -16.29438 -16.11338 -15.65870 -15.45481 -15.26407 -15.07301 -14.59097 -14.31986 -14.07038 -13.37090 -13.28579 -12.83531 -12.60106 -12.44006 -12.28328 -12.17094 -12.11959 -11.97602 -11.80966 -11.56688 -11.46471 -11.03190 -10.81671 -10.52181 -10.11939 -7.87962 0.66078 1.34162 1.51507 1.56394 2.02631 2.05297 2.82162 3.66162 3.68790 3.86547 3.92736 3.98166 4.04080 4.07747 4.21207 4.26431 4.33544 4.43786 4.60729 4.63480 4.66162 4.70871 4.75406 4.78778 4.82502 4.85459 4.94568 4.99305 5.09847 5.15323 5.22655 5.35713 5.46316 5.57785 5.63190 6.06990 6.23440 6.33959 6.84151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.004 3.996 3 C -0.131 4.131 4 C -0.228 4.228 5 C -0.361 4.361 6 C 0.180 3.820 7 N -0.603 5.603 8 C 0.055 3.945 9 C 0.020 3.980 10 O -0.402 6.402 11 C 0.038 3.962 12 C 0.071 3.929 13 C -0.046 4.046 14 O -0.561 6.561 15 Si 1.017 2.983 16 H -0.242 1.242 17 H -0.285 1.285 18 H -0.269 1.269 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.140 0.860 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 0.219 -2.037 2.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.003 3.997 3 C -0.188 4.188 4 C -0.284 4.284 5 C -0.372 4.372 6 C 0.056 3.944 7 N -0.311 5.311 8 C -0.065 4.065 9 C -0.057 4.057 10 O -0.321 6.321 11 C -0.039 4.039 12 C -0.051 4.051 13 C -0.155 4.155 14 O -0.371 6.371 15 Si 0.840 3.160 16 H -0.165 1.165 17 H -0.211 1.211 18 H -0.194 1.194 19 H 0.079 0.921 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.140 0.860 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.330 -0.537 -1.119 2.640 hybrid contribution -0.517 0.701 -0.845 1.213 sum 1.813 0.163 -1.963 2.677 Atomic orbital electron populations 1.22478 0.95039 1.02203 1.02086 1.19113 0.94713 0.94174 0.91660 1.21882 1.00710 0.94775 1.01427 1.24567 1.01349 1.05436 0.97083 1.20819 1.15745 1.05149 0.95488 1.21124 0.97025 0.88500 0.87772 1.48029 1.20611 1.14555 1.47883 1.23143 0.86236 1.06250 0.90896 1.24084 0.97783 0.87843 0.95952 1.87969 1.31496 1.36436 1.76197 1.23199 0.85420 1.04040 0.91261 1.22601 0.95994 0.88900 0.97624 1.24311 0.92244 0.99094 0.99900 1.86739 1.21518 1.79350 1.49506 0.84455 0.76351 0.79310 0.75843 1.16525 1.21115 1.19393 0.92125 0.91892 0.91844 0.93172 0.92654 0.92475 0.85972 0.91651 0.94357 0.84319 0.91927 0.84239 0.90138 0.86998 0.92433 0.86216 0.87208 0.90234 0.91774 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.44 7.47 71.98 0.54 0.97 16 2 C 0.00 0.00 0.63 -52.93 -0.03 -0.04 16 3 C -0.13 0.07 7.78 71.98 0.56 0.63 16 4 C -0.23 0.29 5.31 71.98 0.38 0.67 16 5 C -0.36 -0.25 3.31 -17.35 -0.06 -0.31 16 6 C 0.18 0.05 7.60 82.67 0.63 0.68 16 7 N -0.60 0.37 2.18 -825.49 -1.80 -1.43 16 8 C 0.06 -0.05 5.38 86.35 0.46 0.41 16 9 C 0.02 -0.02 5.62 72.08 0.40 0.38 16 10 O -0.40 -0.98 10.74 -148.98 -1.60 -2.58 16 11 C 0.04 -0.11 6.97 72.08 0.50 0.39 16 12 C 0.07 -0.25 6.75 86.36 0.58 0.33 16 13 C -0.05 -0.10 2.54 71.24 0.18 0.08 16 14 O -0.56 -2.55 12.69 -148.98 -1.89 -4.44 16 15 Si 1.02 2.85 25.92 68.60 1.78 4.63 16 16 H -0.24 -0.19 7.11 99.48 0.71 0.52 16 17 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 18 H -0.27 -1.22 7.11 99.48 0.71 -0.52 16 19 H 0.06 -0.16 7.66 -2.39 -0.02 -0.18 16 20 H 0.06 -0.25 6.90 -2.39 -0.02 -0.26 16 21 H 0.06 -0.19 4.67 -2.39 -0.01 -0.20 16 22 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 23 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.06 -0.04 6.97 -2.39 -0.02 -0.06 16 25 H 0.12 -0.17 1.26 -105.25 -0.13 -0.30 16 26 H 0.06 -0.19 5.75 -2.39 -0.01 -0.20 16 27 H 0.04 0.02 7.68 -2.39 -0.02 0.00 16 28 H 0.14 -0.33 6.13 -2.91 -0.02 -0.35 16 29 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.14 -0.30 1.56 -2.39 0.00 -0.30 16 31 H 0.08 -0.15 5.04 -2.39 -0.01 -0.16 16 32 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.11 -0.82 7.92 -2.38 -0.02 -0.84 16 36 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H 0.06 0.03 6.67 -2.39 -0.02 0.02 16 38 H 0.37 -0.03 5.87 -74.06 -0.43 -0.47 16 Total: 0.00 -7.68 263.28 1.90 -5.78 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: 1.25 Total: -6.17 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 4.15 Total: 4.21 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -1.80 Total: -1.43 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -3.49 Total: -7.02 kcal Atomic # 14 Polarization: 2.85 SS G_CDS: 1.78 Total: 4.63 kcal Total: -7.68 1.90 -5.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206701082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.733 kcal (2) G-P(sol) polarization free energy of solvation -7.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds