Wall clock time and date at job start Tue Mar 17 2020 16:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.46748 * 2 1 4 4 H 1.48500 * 109.46914 * 177.15638 * 3 2 1 5 5 H 1.48500 * 109.47355 * 57.15561 * 3 2 1 6 6 H 1.48502 * 109.47279 * 297.15133 * 3 2 1 7 7 C 1.52999 * 109.47086 * 119.99670 * 2 1 3 8 8 C 1.53000 * 110.35533 * 183.38216 * 7 2 1 9 9 C 1.50695 * 109.47006 * 299.30059 * 8 7 2 10 10 C 1.50871 * 127.54291 * 175.04021 * 9 8 7 11 11 C 1.49003 * 111.39162 * 179.97438 * 10 9 8 12 12 C 1.30877 * 116.98786 * 359.97438 * 11 10 9 13 13 S 1.76459 * 109.81376 * 359.73138 * 12 11 10 14 14 C 1.54275 * 110.40005 * 60.93531 * 7 2 1 15 15 C 1.53862 * 108.92420 * 213.25462 * 14 7 2 16 16 C 1.55136 * 106.90043 * 47.25467 * 15 14 7 17 17 S 1.83098 * 110.40303 * 305.70563 * 7 2 1 18 18 H 1.09000 * 109.47285 * 240.00436 * 2 1 3 19 19 H 1.08998 * 109.47557 * 59.30276 * 8 7 2 20 20 H 1.09004 * 109.46779 * 179.30410 * 8 7 2 21 21 H 1.09001 * 109.10374 * 300.50691 * 10 9 8 22 22 H 1.09002 * 109.10721 * 59.49104 * 10 9 8 23 23 H 1.08007 * 121.50539 * 180.02562 * 11 10 9 24 24 H 1.08001 * 125.09754 * 179.97438 * 12 11 10 25 25 H 1.09007 * 109.60648 * 333.17029 * 14 7 2 26 26 H 1.08997 * 109.60983 * 93.32801 * 14 7 2 27 27 H 1.08994 * 109.96889 * 287.89330 * 15 14 7 28 28 H 1.08998 * 110.00323 * 166.63647 * 15 14 7 29 29 H 1.08997 * 110.85267 * 199.70681 * 16 15 14 30 30 H 1.08995 * 111.03343 * 76.14108 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 3.5333 1.7571 0.0695 5 1 1.4990 2.4763 1.1762 6 1 1.6125 2.4362 -1.2458 7 6 1.9390 -0.7212 1.2493 8 6 3.4665 -0.6601 1.3128 9 6 4.0472 -1.3392 0.0993 10 6 5.4996 -1.4232 -0.3003 11 6 5.6707 -2.1831 -1.5706 12 6 4.5856 -2.6497 -2.1343 13 16 3.1756 -2.2208 -1.1639 14 6 1.4560 -2.1863 1.2593 15 6 1.2166 -2.6229 2.7151 16 6 0.3927 -1.4972 3.3939 17 16 1.2075 0.0179 2.7563 18 1 1.7924 -0.5138 -0.8900 19 1 3.7879 0.3811 1.3351 20 1 3.8132 -1.1668 2.2134 21 1 5.8923 -0.4150 -0.4317 22 1 6.0592 -1.9216 0.4912 23 1 6.6462 -2.3424 -2.0059 24 1 4.5577 -3.2160 -3.0535 25 1 0.5269 -2.2690 0.6951 26 1 2.2143 -2.8246 0.8058 27 1 2.1702 -2.7474 3.2280 28 1 0.6575 -3.5583 2.7367 29 1 0.4765 -1.5555 4.4791 30 1 -0.6516 -1.5357 3.0844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725584061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 16:46:25 Heat of formation + Delta-G solvation = -17.487979 kcal Electronic energy + Delta-G solvation = -14362.054356 eV Core-core repulsion = 12068.935685 eV Total energy + Delta-G solvation = -2293.118672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 244.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -34.45607 -32.77591 -30.36428 -27.67093 -25.18845 -23.65783 -21.40054 -19.23593 -18.91715 -17.16717 -15.48234 -13.35400 -13.24798 -13.07069 -11.94308 -11.67991 -11.57996 -11.17126 -10.84240 -10.25186 -10.06698 -9.84501 -9.22452 -9.15585 -9.04664 -8.41639 -8.25891 -8.03268 -7.91336 -7.71085 -7.47503 -7.33164 -7.17439 -6.80485 -6.28688 -4.84683 -4.74012 -3.71061 -3.19926 -1.74795 4.52849 4.77545 5.18478 5.26571 5.37808 5.44968 5.50632 6.67252 6.88281 7.00498 7.06715 7.35102 7.55160 7.62901 7.84649 7.92351 7.99617 8.30248 8.46734 8.71830 8.82727 8.97640 8.99042 9.06618 9.08467 9.39429 9.48754 9.59648 10.01737 10.19092 10.68024 12.09719 Molecular weight = 244.05amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.012304 C = 0.010527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.420680 B = 2275.124039 C = 2659.283312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.882 6.882 2 C 0.044 3.956 3 Si 0.841 3.159 4 H -0.285 1.285 5 H -0.283 1.283 6 H -0.305 1.305 7 C 0.027 3.973 8 C 0.096 3.904 9 C -0.732 4.732 10 C 0.081 3.919 11 C -0.231 4.231 12 C -0.203 4.203 13 S -0.051 6.051 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.061 4.061 17 S -0.357 6.357 18 H 0.027 0.973 19 H -0.004 1.004 20 H -0.019 1.019 21 H -0.034 1.034 22 H -0.034 1.034 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -5.443 4.032 7.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.829 6.829 2 C -0.079 4.079 3 Si 0.675 3.325 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.233 1.233 7 C -0.082 4.082 8 C 0.055 3.945 9 C -0.843 4.843 10 C 0.043 3.957 11 C -0.270 4.270 12 C -0.336 4.336 13 S 0.203 5.797 14 C -0.148 4.148 15 C -0.157 4.157 16 C -0.210 4.210 17 S -0.129 6.129 18 H 0.043 0.957 19 H 0.014 0.986 20 H -0.001 1.001 21 H -0.017 1.017 22 H -0.017 1.017 23 H 0.092 0.908 24 H 0.126 0.874 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.572 -3.727 4.367 5.770 hybrid contribution 1.741 -0.716 -0.349 1.915 sum 2.314 -4.444 4.018 6.422 Atomic orbital electron populations 1.94750 1.04588 1.90244 1.93341 1.23580 0.98484 0.94479 0.91364 0.87605 0.75872 0.92868 0.76124 1.21320 1.21008 1.23289 1.24357 0.95748 0.94917 0.93194 1.18373 0.89399 0.93952 0.92808 1.23051 0.88743 1.58279 1.14268 1.17637 0.96749 0.91841 0.89502 1.22252 0.95508 1.07805 1.01391 1.24988 1.01379 1.05147 1.02102 1.82864 1.09906 1.61609 1.25299 1.22379 1.02574 0.96460 0.93430 1.22490 0.98324 0.96299 0.98555 1.23821 1.01322 0.96296 0.99546 1.86615 1.69509 1.22308 1.34468 0.95710 0.98629 1.00101 1.01693 1.01666 0.90803 0.87422 0.91347 0.88803 0.92135 0.92928 0.91392 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.88 -46.76 16.68 -35.23 -0.59 -47.35 16 2 C 0.04 2.15 1.81 37.16 0.07 2.22 16 3 Si 0.84 39.31 25.24 -169.99 -4.29 35.02 16 4 H -0.29 -13.36 6.26 56.52 0.35 -13.00 16 5 H -0.28 -13.14 7.07 56.52 0.40 -12.74 16 6 H -0.30 -13.93 7.11 56.52 0.40 -13.52 16 7 C 0.03 1.24 0.21 -89.95 -0.02 1.22 16 8 C 0.10 4.40 4.52 -27.89 -0.13 4.27 16 9 C -0.73 -33.83 6.12 -28.95 -0.18 -34.00 16 10 C 0.08 3.54 6.28 -29.76 -0.19 3.36 16 11 C -0.23 -9.24 10.36 -36.80 -0.38 -9.62 16 12 C -0.20 -8.03 11.14 29.05 0.32 -7.71 16 13 S -0.05 -2.25 16.65 -107.50 -1.79 -4.04 16 14 C -0.11 -4.63 4.49 -25.62 -0.12 -4.74 16 15 C -0.12 -4.32 6.46 -25.15 -0.16 -4.48 16 16 C -0.06 -2.24 7.38 38.29 0.28 -1.96 16 17 S -0.36 -15.30 20.17 -107.50 -2.17 -17.47 16 18 H 0.03 1.33 4.64 -37.61 -0.17 1.16 16 19 H 0.00 -0.20 5.40 -51.93 -0.28 -0.48 16 20 H -0.02 -0.86 8.14 -51.93 -0.42 -1.28 16 21 H -0.03 -1.54 8.14 -51.93 -0.42 -1.97 16 22 H -0.03 -1.48 8.14 -51.93 -0.42 -1.90 16 23 H 0.07 2.66 8.06 -52.48 -0.42 2.23 16 24 H 0.11 3.80 8.06 -52.49 -0.42 3.37 16 25 H 0.07 3.08 7.24 -51.93 -0.38 2.70 16 26 H 0.09 4.06 5.07 -43.01 -0.22 3.84 16 27 H 0.06 2.16 8.14 -51.93 -0.42 1.74 16 28 H 0.05 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.07 2.17 8.14 -51.93 -0.42 1.75 16 30 H 0.07 2.61 8.14 -51.93 -0.42 2.19 16 LS Contribution 253.41 15.07 3.82 3.82 Total: -2.00 -96.88 253.41 -9.21 -106.09 By element: Atomic # 1 Polarization: -20.93 SS G_CDS: -3.70 Total: -24.63 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: -0.49 Total: -51.45 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.59 Total: -47.35 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: -4.29 Total: 35.02 kcal Atomic # 16 Polarization: -17.55 SS G_CDS: -3.96 Total: -21.51 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -96.88 -9.21 -106.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725584061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.603 kcal (2) G-P(sol) polarization free energy of solvation -96.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds