Wall clock time and date at job start Tue Mar 17 2020 17:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 C 1.53000 * 109.47159 * 119.99827 * 2 1 3 5 5 C 1.50700 * 109.47061 * 295.00385 * 4 2 1 6 6 S 1.77052 * 127.54485 * 359.67110 * 5 4 2 7 7 C 1.76382 * 96.91057 * 177.64044 * 6 5 4 8 8 C 1.31378 * 110.25779 * 0.44100 * 7 6 5 9 9 O 1.38169 * 124.40358 * 184.67299 * 8 7 6 10 10 C 1.43778 * 111.70581 * 128.39956 * 9 8 7 11 11 C 1.52897 * 109.90276 * 49.49737 * 10 9 8 12 12 O 1.43390 * 110.62882 * 303.27196 * 11 10 9 13 13 C 1.42966 * 112.33383 * 60.62568 * 12 11 10 14 14 H 1.09002 * 108.23393 * 63.33241 * 13 12 11 15 15 C 1.53005 * 109.47027 * 240.00031 * 2 1 3 16 16 O 1.42901 * 109.47026 * 299.99593 * 15 2 1 17 17 Si 1.86296 * 109.47315 * 60.00025 * 15 2 1 18 18 H 1.48499 * 109.47166 * 59.99988 * 17 15 2 19 19 H 1.48492 * 109.47240 * 180.02562 * 17 15 2 20 20 H 1.48505 * 109.46978 * 299.99885 * 17 15 2 21 21 H 1.08998 * 109.46701 * 60.00408 * 1 2 3 22 22 H 1.08997 * 109.46650 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47086 * 300.00161 * 1 2 3 24 24 H 1.08995 * 109.47201 * 174.99990 * 4 2 1 25 25 H 1.09001 * 109.46633 * 55.00023 * 4 2 1 26 26 H 1.08009 * 124.86945 * 180.39021 * 7 6 5 27 27 H 1.09000 * 109.40173 * 289.36736 * 10 9 8 28 28 H 1.08997 * 109.40484 * 169.63007 * 10 9 8 29 29 H 1.08996 * 109.24418 * 182.97829 * 11 10 9 30 30 H 1.09002 * 109.24201 * 63.56444 * 11 10 9 31 31 H 1.08997 * 109.46754 * 180.02562 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 16 0.7351 1.5766 2.5433 7 6 0.6691 1.7073 4.3010 8 6 1.2900 0.6915 4.8564 9 8 1.3361 0.4536 6.2167 10 6 0.9367 -0.8903 6.5353 11 6 1.6931 -1.8818 5.6507 12 8 1.4756 -1.5893 4.2639 13 6 1.9308 -0.2821 3.9064 14 1 3.0099 -0.2440 4.0556 15 6 2.0401 -0.7213 -1.2493 16 8 1.5638 -2.0686 -1.2492 17 14 1.4191 0.1569 -2.7704 18 1 1.9141 1.5570 -2.7704 19 1 1.9135 -0.5435 -3.9828 20 1 -0.0659 0.1569 -2.7704 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.1263 -0.7994 1.2056 25 1 1.6054 -1.7198 1.2951 26 1 0.1879 2.5081 4.8431 27 1 -0.1347 -0.9992 6.3668 28 1 1.1599 -1.0959 7.5822 29 1 1.3442 -2.8921 5.8638 30 1 2.7591 -1.8169 5.8687 31 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725649046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:24:46 Heat of formation + Delta-G solvation = -103.291143 kcal Electronic energy + Delta-G solvation = -16178.214472 eV Core-core repulsion = 13438.622224 eV Total energy + Delta-G solvation = -2739.592247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.70995 -33.92467 -33.05298 -31.44011 -27.66687 -27.16487 -25.69438 -23.36525 -21.44076 -21.19632 -18.52568 -16.78143 -16.10373 -14.97315 -13.94883 -13.48484 -13.15594 -12.76798 -12.43262 -12.12984 -11.66725 -11.39858 -11.12111 -10.16091 -9.91821 -9.56814 -9.32540 -9.21359 -9.03070 -8.64470 -8.48166 -8.40630 -8.22203 -7.61803 -7.48554 -7.35267 -7.22159 -6.78400 -6.58984 -5.02875 -3.97414 -3.45150 -2.16403 4.15552 4.74874 4.86161 4.90528 4.92318 5.94664 6.18500 6.31265 6.58001 6.60106 6.73910 6.89641 7.29350 7.38369 7.52361 7.92015 8.24132 8.30871 8.42548 8.54351 8.88478 8.90072 9.15762 9.31188 9.37475 9.41619 9.44692 9.76651 9.80424 10.02984 10.14292 10.49472 11.88857 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.040985 B = 0.007355 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.018177 B = 3805.775547 C = 4281.704906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 H 0.020 0.980 4 C 0.103 3.897 5 C -0.678 4.678 6 S -0.035 6.035 7 C -0.208 4.208 8 C -0.072 4.072 9 O -0.326 6.326 10 C 0.028 3.972 11 C 0.023 3.977 12 O -0.393 6.393 13 C 0.248 3.752 14 H -0.024 1.024 15 C 0.028 3.972 16 O -0.875 6.875 17 Si 0.850 3.150 18 H -0.312 1.312 19 H -0.303 1.303 20 H -0.285 1.285 21 H 0.012 0.988 22 H 0.050 0.950 23 H 0.052 0.948 24 H -0.013 1.013 25 H 0.016 0.984 26 H 0.120 0.880 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.033 0.967 31 H -0.040 1.040 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 4.937 12.172 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.112 4.112 3 H 0.039 0.961 4 C 0.064 3.936 5 C -0.790 4.790 6 S 0.221 5.779 7 C -0.342 4.342 8 C -0.134 4.134 9 O -0.244 6.244 10 C -0.049 4.049 11 C -0.056 4.056 12 O -0.316 6.316 13 C 0.194 3.806 14 H -0.007 1.007 15 C -0.091 4.091 16 O -0.823 6.823 17 Si 0.685 3.315 18 H -0.242 1.242 19 H -0.231 1.231 20 H -0.212 1.212 21 H 0.031 0.969 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.005 0.995 25 H 0.035 0.965 26 H 0.138 0.862 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.052 0.948 31 H -0.023 1.023 Dipole moment (debyes) X Y Z Total from point charges -2.540 5.939 10.375 12.222 hybrid contribution 0.406 -0.767 1.514 1.745 sum -2.134 5.172 11.889 13.140 Atomic orbital electron populations 1.21744 0.98294 1.00663 0.97379 1.21465 0.94348 0.96217 0.99220 0.96127 1.17997 0.93237 0.94602 0.87800 1.23829 1.54242 1.10133 0.90753 1.82335 1.67058 1.32089 0.96446 1.24391 1.05809 1.03051 1.00981 1.21825 1.07534 1.01504 0.82582 1.87075 1.86753 1.28864 1.21664 1.23168 0.98683 0.84849 0.98244 1.22655 0.97672 0.97126 0.88127 1.88798 1.83808 1.39755 1.19208 1.18952 0.91938 0.77859 0.91828 1.00676 1.23486 0.92955 0.99181 0.93515 1.94792 1.83568 1.13385 1.90548 0.87939 0.80830 0.74476 0.88260 1.24204 1.23106 1.21174 0.96924 0.93100 0.92991 0.99518 0.96546 0.86210 0.93423 0.90308 0.91099 0.94838 1.02268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.25 37.16 0.31 -5.20 16 2 C -0.09 -4.32 1.55 -90.61 -0.14 -4.47 16 3 H 0.02 0.93 7.68 -51.93 -0.40 0.53 16 4 C 0.10 4.98 5.10 -27.88 -0.14 4.83 16 5 C -0.68 -31.29 6.48 -29.48 -0.19 -31.48 16 6 S -0.03 -1.44 19.22 -107.50 -2.07 -3.51 16 7 C -0.21 -8.11 11.12 28.92 0.32 -7.79 16 8 C -0.07 -2.90 6.21 -36.29 -0.23 -3.13 16 9 O -0.33 -11.82 10.96 -36.27 -0.40 -12.21 16 10 C 0.03 0.89 7.09 37.10 0.26 1.16 16 11 C 0.02 0.78 6.86 37.10 0.25 1.03 16 12 O -0.39 -16.59 10.71 -44.42 -0.48 -17.06 16 13 C 0.25 10.85 3.23 -29.64 -0.10 10.75 16 14 H -0.02 -1.05 8.14 -51.93 -0.42 -1.48 16 15 C 0.03 1.34 2.47 37.16 0.09 1.43 16 16 O -0.88 -46.65 16.78 -35.23 -0.59 -47.24 16 17 Si 0.85 35.67 26.63 -169.99 -4.53 31.14 16 18 H -0.31 -12.34 7.11 56.52 0.40 -11.93 16 19 H -0.30 -12.42 7.11 56.52 0.40 -12.02 16 20 H -0.29 -11.98 6.36 56.52 0.36 -11.62 16 21 H 0.01 0.51 5.55 -51.93 -0.29 0.22 16 22 H 0.05 2.37 7.68 -51.93 -0.40 1.97 16 23 H 0.05 2.25 4.94 -40.94 -0.20 2.05 16 24 H -0.01 -0.66 8.14 -51.93 -0.42 -1.08 16 25 H 0.02 0.84 7.84 -51.93 -0.41 0.43 16 26 H 0.12 4.21 8.06 -52.48 -0.42 3.78 16 27 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 29 H 0.07 2.14 8.14 -51.93 -0.42 1.72 16 30 H 0.03 1.11 8.14 -51.93 -0.42 0.69 16 31 H -0.04 -1.88 7.96 -51.93 -0.41 -2.29 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -2.00 -96.48 261.80 -7.58 -104.06 By element: Atomic # 1 Polarization: -22.35 SS G_CDS: -3.91 Total: -26.26 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 0.44 Total: -32.86 kcal Atomic # 8 Polarization: -75.05 SS G_CDS: -1.46 Total: -76.52 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: -4.53 Total: 31.14 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.07 Total: -3.51 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -96.48 -7.58 -104.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725649046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.768 kcal (2) G-P(sol) polarization free energy of solvation -96.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds