Wall clock time and date at job start Tue Mar 17 2020 17:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 C 1.53000 * 109.47159 * 119.99827 * 2 1 3 5 5 C 1.50700 * 109.47061 * 295.00385 * 4 2 1 6 6 S 1.77052 * 127.54485 * 359.67110 * 5 4 2 7 7 C 1.76382 * 96.91057 * 177.64044 * 6 5 4 8 8 C 1.31378 * 110.25779 * 0.44100 * 7 6 5 9 9 O 1.38169 * 124.40358 * 184.67299 * 8 7 6 10 10 C 1.43778 * 111.70581 * 128.39956 * 9 8 7 11 11 C 1.52897 * 109.90276 * 49.49737 * 10 9 8 12 12 O 1.43390 * 110.62882 * 303.27196 * 11 10 9 13 13 C 1.42966 * 112.33383 * 60.62568 * 12 11 10 14 14 H 1.09002 * 108.23393 * 63.33241 * 13 12 11 15 15 C 1.53005 * 109.47027 * 240.00031 * 2 1 3 16 16 O 1.42901 * 109.47026 * 299.99593 * 15 2 1 17 17 Si 1.86296 * 109.47315 * 60.00025 * 15 2 1 18 18 H 1.48499 * 109.47166 * 59.99988 * 17 15 2 19 19 H 1.48492 * 109.47240 * 180.02562 * 17 15 2 20 20 H 1.48505 * 109.46978 * 299.99885 * 17 15 2 21 21 H 1.08998 * 109.46701 * 60.00408 * 1 2 3 22 22 H 1.08997 * 109.46650 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47086 * 300.00161 * 1 2 3 24 24 H 1.08995 * 109.47201 * 174.99990 * 4 2 1 25 25 H 1.09001 * 109.46633 * 55.00023 * 4 2 1 26 26 H 1.08009 * 124.86945 * 180.39021 * 7 6 5 27 27 H 1.09000 * 109.40173 * 289.36736 * 10 9 8 28 28 H 1.08997 * 109.40484 * 169.63007 * 10 9 8 29 29 H 1.08996 * 109.24418 * 182.97829 * 11 10 9 30 30 H 1.09002 * 109.24201 * 63.56444 * 11 10 9 31 31 H 1.08997 * 109.46754 * 180.02562 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 16 0.7351 1.5766 2.5433 7 6 0.6691 1.7073 4.3010 8 6 1.2900 0.6915 4.8564 9 8 1.3361 0.4536 6.2167 10 6 0.9367 -0.8903 6.5353 11 6 1.6931 -1.8818 5.6507 12 8 1.4756 -1.5893 4.2639 13 6 1.9308 -0.2821 3.9064 14 1 3.0099 -0.2440 4.0556 15 6 2.0401 -0.7213 -1.2493 16 8 1.5638 -2.0686 -1.2492 17 14 1.4191 0.1569 -2.7704 18 1 1.9141 1.5570 -2.7704 19 1 1.9135 -0.5435 -3.9828 20 1 -0.0659 0.1569 -2.7704 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.1263 -0.7994 1.2056 25 1 1.6054 -1.7198 1.2951 26 1 0.1879 2.5081 4.8431 27 1 -0.1347 -0.9992 6.3668 28 1 1.1599 -1.0959 7.5822 29 1 1.3442 -2.8921 5.8638 30 1 2.7591 -1.8169 5.8687 31 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725649046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:24:45 Heat of formation + Delta-G solvation = -188.726173 kcal Electronic energy + Delta-G solvation = -16181.919212 eV Core-core repulsion = 13438.622224 eV Total energy + Delta-G solvation = -2743.296988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75366 -37.14005 -36.66158 -34.57369 -31.47475 -30.02575 -29.21841 -26.89518 -25.13405 -24.07198 -21.78034 -20.00730 -19.80531 -18.09012 -17.00542 -16.56418 -16.25883 -15.84350 -15.76535 -15.21084 -15.11807 -14.74793 -14.33638 -13.54003 -13.13537 -13.08217 -12.63808 -12.43153 -12.35508 -11.99318 -11.78397 -11.76178 -11.59971 -11.09924 -11.02121 -10.96005 -10.64169 -10.16246 -9.92979 -8.34859 -7.94154 -7.35410 -5.70308 1.06234 1.37376 1.59917 1.66442 1.72205 2.80675 2.86604 3.10661 3.59023 3.85733 4.17885 4.21668 4.31380 4.55186 4.66951 4.72980 4.76997 4.84822 4.87763 4.91997 5.18400 5.51106 5.56512 5.64108 5.67438 5.73696 5.98248 6.08882 6.19158 6.49088 6.81348 6.87894 8.13366 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.040985 B = 0.007355 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.018177 B = 3805.775547 C = 4281.704906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 H 0.033 0.967 4 C 0.119 3.881 5 C -0.751 4.751 6 S -0.030 6.030 7 C -0.185 4.185 8 C -0.061 4.061 9 O -0.321 6.321 10 C 0.028 3.972 11 C 0.004 3.996 12 O -0.433 6.433 13 C 0.244 3.756 14 H -0.057 1.057 15 C -0.060 4.060 16 O -0.953 6.953 17 Si 0.966 3.034 18 H -0.259 1.259 19 H -0.285 1.285 20 H -0.277 1.277 21 H 0.044 0.956 22 H 0.012 0.988 23 H 0.066 0.934 24 H -0.054 1.054 25 H -0.050 1.050 26 H 0.175 0.825 27 H 0.056 0.944 28 H 0.149 0.851 29 H 0.116 0.884 30 H 0.040 0.960 31 H -0.072 1.072 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 7.937 13.545 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 H 0.052 0.948 4 C 0.080 3.920 5 C -0.862 4.862 6 S 0.222 5.778 7 C -0.318 4.318 8 C -0.122 4.122 9 O -0.239 6.239 10 C -0.048 4.048 11 C -0.073 4.073 12 O -0.356 6.356 13 C 0.188 3.812 14 H -0.040 1.040 15 C -0.176 4.176 16 O -0.904 6.904 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.063 0.937 22 H 0.031 0.969 23 H 0.084 0.916 24 H -0.036 1.036 25 H -0.032 1.032 26 H 0.192 0.808 27 H 0.074 0.926 28 H 0.166 0.834 29 H 0.133 0.867 30 H 0.058 0.942 31 H -0.055 1.055 Dipole moment (debyes) X Y Z Total from point charges -4.414 8.944 11.788 15.442 hybrid contribution 1.191 -1.840 1.520 2.668 sum -3.224 7.104 13.308 15.426 Atomic orbital electron populations 1.21589 0.96566 0.98859 0.99624 1.21409 0.95779 0.96024 0.98000 0.94847 1.17704 0.90348 0.92409 0.91543 1.23609 1.58256 1.13383 0.90957 1.81794 1.67402 1.29492 0.99080 1.24773 1.04118 1.03509 0.99447 1.21504 1.06181 1.00505 0.84013 1.87059 1.86907 1.31486 1.18428 1.23537 0.98702 0.81339 1.01201 1.23223 0.99086 1.00596 0.84360 1.88612 1.83833 1.38670 1.24499 1.18783 0.90482 0.79686 0.92221 1.04008 1.24883 0.92314 0.99338 1.01024 1.94715 1.84571 1.17466 1.93636 0.85970 0.79476 0.75436 0.79738 1.18441 1.21173 1.20275 0.93747 0.96853 0.91561 1.03635 1.03177 0.80798 0.92590 0.83356 0.86656 0.94216 1.05514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -9.72 8.25 71.98 0.59 -9.12 16 2 C -0.09 -8.79 1.55 -10.79 -0.02 -8.81 16 3 H 0.03 3.03 7.68 -2.39 -0.02 3.01 16 4 C 0.12 12.07 5.10 29.85 0.15 12.22 16 5 C -0.75 -70.81 6.48 28.81 0.19 -70.62 16 6 S -0.03 -2.42 19.22 -56.49 -1.09 -3.51 16 7 C -0.18 -13.57 11.12 67.41 0.75 -12.82 16 8 C -0.06 -4.71 6.21 25.17 0.16 -4.56 16 9 O -0.32 -21.54 10.96 -111.01 -1.22 -22.76 16 10 C 0.03 1.63 7.09 71.95 0.51 2.14 16 11 C 0.00 0.29 6.86 71.95 0.49 0.78 16 12 O -0.43 -36.73 10.71 -140.19 -1.50 -38.23 16 13 C 0.24 21.41 3.23 28.71 0.09 21.50 16 14 H -0.06 -5.21 8.14 -2.39 -0.02 -5.23 16 15 C -0.06 -5.87 2.47 71.98 0.18 -5.69 16 16 O -0.95 -105.54 16.78 -148.98 -2.50 -108.04 16 17 Si 0.97 76.29 26.63 68.60 1.83 78.12 16 18 H -0.26 -18.17 7.11 99.48 0.71 -17.47 16 19 H -0.29 -21.65 7.11 99.48 0.71 -20.94 16 20 H -0.28 -21.50 6.36 99.48 0.63 -20.86 16 21 H 0.04 3.60 5.55 -2.39 -0.01 3.59 16 22 H 0.01 1.19 7.68 -2.39 -0.02 1.17 16 23 H 0.07 5.70 4.94 -9.38 -0.05 5.66 16 24 H -0.05 -5.73 8.14 -2.39 -0.02 -5.75 16 25 H -0.05 -5.61 7.84 -2.39 -0.02 -5.63 16 26 H 0.17 10.93 8.06 -2.91 -0.02 10.90 16 27 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.15 6.68 8.14 -2.39 -0.02 6.66 16 29 H 0.12 6.49 8.14 -2.39 -0.02 6.47 16 30 H 0.04 2.53 8.14 -2.39 -0.02 2.51 16 31 H -0.07 -7.14 7.96 -2.39 -0.02 -7.16 16 Total: -2.00 -209.66 261.80 0.39 -209.27 By element: Atomic # 1 Polarization: -41.65 SS G_CDS: 1.77 Total: -39.88 kcal Atomic # 6 Polarization: -78.06 SS G_CDS: 3.10 Total: -74.97 kcal Atomic # 8 Polarization: -163.81 SS G_CDS: -5.22 Total: -169.03 kcal Atomic # 14 Polarization: 76.29 SS G_CDS: 1.83 Total: 78.12 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -1.09 Total: -3.51 kcal Total: -209.66 0.39 -209.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725649046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.541 kcal (2) G-P(sol) polarization free energy of solvation -209.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -209.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds