Wall clock time and date at job start Tue Mar 17 2020 17:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47427 * 2 1 4 4 H 1.48502 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46675 * 300.00162 * 3 2 1 6 6 H 1.48494 * 109.47226 * 59.99882 * 3 2 1 7 7 C 1.53000 * 109.47405 * 119.99869 * 2 1 3 8 8 C 1.50703 * 109.46912 * 64.99886 * 7 2 1 9 9 C 1.38344 * 119.85396 * 269.72691 * 8 7 2 10 10 C 1.37976 * 120.13890 * 179.72312 * 9 8 7 11 11 C 1.39538 * 119.85493 * 0.57132 * 10 9 8 12 12 C 1.47808 * 120.13944 * 179.72440 * 11 10 9 13 13 C 1.32566 * 120.00328 * 359.97438 * 12 11 10 14 Xx 1.55600 * 120.00173 * 179.97438 * 13 12 11 15 14 F 1.36996 * 109.47058 * 359.97438 * 14 13 12 16 15 F 1.37009 * 109.47239 * 119.99360 * 14 13 12 17 16 F 1.37000 * 109.47174 * 239.99383 * 14 13 12 18 17 C 1.39538 * 119.71785 * 359.70342 * 11 10 9 19 18 C 1.37970 * 119.85258 * 359.97438 * 18 11 10 20 19 H 1.09002 * 109.47167 * 240.00004 * 2 1 3 21 20 H 1.09002 * 109.47398 * 184.99964 * 7 2 1 22 21 H 1.09001 * 109.47194 * 305.00145 * 7 2 1 23 22 H 1.07996 * 119.93481 * 359.97438 * 9 8 7 24 23 H 1.08001 * 120.07379 * 180.29954 * 10 9 8 25 24 H 1.08006 * 119.99878 * 179.97438 * 12 11 10 26 25 H 1.08006 * 119.99794 * 359.97438 * 13 12 11 27 26 H 1.07999 * 120.07001 * 179.97438 * 18 11 10 28 27 H 1.08002 * 119.92491 * 179.97438 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7564 -0.0006 5 1 1.5550 2.4565 -1.2126 6 1 1.5551 2.4565 1.2124 7 6 1.9391 -0.7212 1.2492 8 6 1.5404 -2.1733 1.1889 9 6 0.3355 -2.5798 1.7338 10 6 -0.0380 -3.9069 1.6768 11 6 0.8080 -4.8415 1.0784 12 6 0.4169 -6.2656 1.0193 13 6 -0.7394 -6.6576 1.5358 14 9 -0.1690 -8.8742 0.8429 15 9 -1.3235 -8.6367 2.7447 16 9 -2.3243 -8.2792 0.7760 17 6 2.0244 -4.4257 0.5358 18 6 2.3830 -3.0947 0.5934 19 1 1.7923 -0.5138 -0.8900 20 1 3.0254 -0.6443 1.2951 21 1 1.5044 -0.2617 2.1370 22 1 -0.3160 -1.8564 2.2013 23 1 -0.9810 -4.2223 2.0983 24 1 1.0732 -6.9870 0.5552 25 1 -1.3955 -5.9362 2.0003 26 1 2.6837 -5.1443 0.0717 27 1 3.3245 -2.7717 0.1741 There are 42 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 42 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380407715.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:26:42 Heat of formation + Delta-G solvation = 70.527151 kcal Electronic energy + Delta-G solvation = -15227.893308 eV Core-core repulsion = 11933.108097 eV Total energy + Delta-G solvation = -3294.785211 eV No. of doubly occupied orbitals = 42 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -37.93293 -37.70165 -37.68306 -36.59198 -33.37585 -30.80949 -29.28877 -27.79265 -24.82872 -21.47818 -20.43288 -18.57711 -17.54503 -14.81201 -13.79394 -13.33284 -13.02398 -12.11450 -11.69477 -11.58301 -11.40971 -10.98925 -10.48187 -10.11094 -9.62889 -9.26022 -9.21390 -8.78771 -8.62619 -8.39835 -8.32608 -8.09179 -8.00200 -7.74336 -7.70144 -7.26866 -6.65412 -6.62448 -6.32240 -5.60164 -4.86510 -4.32778 -2.54248 1.84089 2.63738 3.10543 4.12749 4.16879 4.23571 4.29878 5.40919 5.65848 6.32541 6.48791 6.54831 6.61454 6.89292 7.00160 7.18696 7.38889 7.53296 7.62862 7.71632 7.80827 8.03407 8.19682 8.22685 8.23738 8.48283 8.67465 8.75215 10.97493 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.055964 B = 0.004775 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.203024 B = 5862.374959 C = 6040.997785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.865 6.865 2 C 0.018 3.982 3 Si 0.873 3.127 4 H -0.310 1.310 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.108 4.108 8 C -0.025 4.025 9 C -0.087 4.087 10 C -0.129 4.129 11 C -0.049 4.049 12 C -0.179 4.179 13 C 0.278 3.722 14 F -0.426 7.426 15 F -0.597 7.597 16 F -0.436 7.436 17 C -0.107 4.107 18 C -0.131 4.131 19 H -0.024 1.024 20 H 0.039 0.961 21 H 0.053 0.947 22 H 0.123 0.877 23 H 0.117 0.883 24 H 0.147 0.853 25 H 0.169 0.831 26 H 0.118 0.882 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 10.216 1.099 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.812 6.812 2 C -0.102 4.102 3 Si 0.706 3.294 4 H -0.240 1.240 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.146 4.146 8 C -0.025 4.025 9 C -0.105 4.105 10 C -0.147 4.147 11 C -0.050 4.050 12 C -0.198 4.198 13 C 0.247 3.753 14 F -0.424 7.424 15 F -0.587 7.587 16 F -0.433 7.433 17 C -0.126 4.126 18 C -0.149 4.149 19 H -0.007 1.007 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.141 0.859 23 H 0.135 0.865 24 H 0.165 0.835 25 H 0.185 0.815 26 H 0.136 0.864 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.838 11.000 1.146 15.484 hybrid contribution -0.151 -0.716 -0.100 0.738 sum 10.687 10.284 1.046 14.868 Atomic orbital electron populations 1.94925 1.03508 1.89552 1.93248 1.23502 1.00357 0.95372 0.91001 0.87592 0.73296 0.90808 0.77744 1.23965 1.21569 1.21231 1.21509 0.97294 0.92024 1.03742 1.19970 0.93499 0.95431 0.93604 1.20886 0.96021 0.94225 0.99355 1.21281 0.98819 0.93660 1.00891 1.18297 0.95822 0.88907 1.01929 1.22075 0.97839 0.94102 1.05736 1.30457 0.93084 0.56175 0.95540 1.99888 1.58581 1.87684 1.96234 1.99880 1.92782 1.74827 1.91209 1.99894 1.50939 1.96077 1.96370 1.20951 0.95692 0.95747 1.00166 1.20848 1.00114 0.92479 1.01475 1.00706 0.94249 0.92859 0.85910 0.86534 0.83521 0.81499 0.86439 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 139. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.87 -38.46 17.53 -35.23 -0.62 -39.08 15 2 C 0.02 0.66 2.59 37.16 0.10 0.76 15 3 Si 0.87 28.91 28.53 -169.99 -4.85 24.06 15 4 H -0.31 -9.45 7.11 56.52 0.40 -9.05 15 5 H -0.29 -9.77 7.11 56.52 0.40 -9.37 15 6 H -0.29 -9.57 7.11 56.52 0.40 -9.17 15 7 C -0.11 -3.61 4.44 -27.88 -0.12 -3.74 15 8 C -0.02 -0.83 4.97 -104.54 -0.52 -1.35 15 9 C -0.09 -2.89 9.39 -39.64 -0.37 -3.27 15 10 C -0.13 -4.12 9.40 -39.19 -0.37 -4.49 15 11 C -0.05 -1.58 5.87 -105.01 -0.62 -2.20 15 12 C -0.18 -6.24 9.36 -37.58 -0.35 -6.59 15 13 C 0.28 10.66 10.43 28.83 0.30 10.96 15 14 F -0.43 -20.95 17.16 2.25 0.04 -20.91 15 15 F -0.60 -30.98 18.43 2.25 0.04 -30.94 15 16 F -0.44 -21.78 18.42 2.25 0.04 -21.74 15 17 C -0.11 -3.25 9.79 -39.20 -0.38 -3.63 15 18 C -0.13 -4.01 9.68 -39.64 -0.38 -4.39 15 19 H -0.02 -0.90 7.96 -51.93 -0.41 -1.32 15 20 H 0.04 1.17 7.78 -51.93 -0.40 0.76 15 21 H 0.05 1.76 8.01 -51.93 -0.42 1.35 15 22 H 0.12 4.09 8.06 -52.49 -0.42 3.67 15 23 H 0.12 3.48 6.17 -52.49 -0.32 3.16 15 24 H 0.15 5.17 7.14 -52.48 -0.37 4.80 15 25 H 0.17 5.67 6.04 -52.48 -0.32 5.35 15 26 H 0.12 3.21 8.06 -52.49 -0.42 2.78 15 27 H 0.12 3.19 8.06 -52.49 -0.42 2.77 15 LS Contribution 264.57 15.07 3.99 3.99 Total: -2.00 -100.44 264.57 -6.39 -106.83 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -2.31 Total: -4.27 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.72 Total: -17.94 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.62 Total: -39.08 kcal Atomic # 9 Polarization: -73.72 SS G_CDS: 0.12 Total: -73.60 kcal Atomic # 14 Polarization: 28.91 SS G_CDS: -4.85 Total: 24.06 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -100.44 -6.39 -106.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380407715.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.356 kcal (2) G-P(sol) polarization free energy of solvation -100.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds