Wall clock time and date at job start Tue Mar 17 2020 17:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47427 * 2 1 4 4 H 1.48502 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46675 * 300.00162 * 3 2 1 6 6 H 1.48494 * 109.47226 * 59.99882 * 3 2 1 7 7 C 1.53000 * 109.47405 * 119.99869 * 2 1 3 8 8 C 1.50703 * 109.46912 * 64.99886 * 7 2 1 9 9 C 1.38344 * 119.85396 * 269.72691 * 8 7 2 10 10 C 1.37976 * 120.13890 * 179.72312 * 9 8 7 11 11 C 1.39538 * 119.85493 * 0.57132 * 10 9 8 12 12 C 1.47808 * 120.13944 * 179.72440 * 11 10 9 13 13 C 1.32566 * 120.00328 * 359.97438 * 12 11 10 14 Xx 1.55600 * 120.00173 * 179.97438 * 13 12 11 15 14 F 1.36996 * 109.47058 * 359.97438 * 14 13 12 16 15 F 1.37009 * 109.47239 * 119.99360 * 14 13 12 17 16 F 1.37000 * 109.47174 * 239.99383 * 14 13 12 18 17 C 1.39538 * 119.71785 * 359.70342 * 11 10 9 19 18 C 1.37970 * 119.85258 * 359.97438 * 18 11 10 20 19 H 1.09002 * 109.47167 * 240.00004 * 2 1 3 21 20 H 1.09002 * 109.47398 * 184.99964 * 7 2 1 22 21 H 1.09001 * 109.47194 * 305.00145 * 7 2 1 23 22 H 1.07996 * 119.93481 * 359.97438 * 9 8 7 24 23 H 1.08001 * 120.07379 * 180.29954 * 10 9 8 25 24 H 1.08006 * 119.99878 * 179.97438 * 12 11 10 26 25 H 1.08006 * 119.99794 * 359.97438 * 13 12 11 27 26 H 1.07999 * 120.07001 * 179.97438 * 18 11 10 28 27 H 1.08002 * 119.92491 * 179.97438 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7564 -0.0006 5 1 1.5550 2.4565 -1.2126 6 1 1.5551 2.4565 1.2124 7 6 1.9391 -0.7212 1.2492 8 6 1.5404 -2.1733 1.1889 9 6 0.3355 -2.5798 1.7338 10 6 -0.0380 -3.9069 1.6768 11 6 0.8080 -4.8415 1.0784 12 6 0.4169 -6.2656 1.0193 13 6 -0.7394 -6.6576 1.5358 14 9 -0.1690 -8.8742 0.8429 15 9 -1.3235 -8.6367 2.7447 16 9 -2.3243 -8.2792 0.7760 17 6 2.0244 -4.4257 0.5358 18 6 2.3830 -3.0947 0.5934 19 1 1.7923 -0.5138 -0.8900 20 1 3.0254 -0.6443 1.2951 21 1 1.5044 -0.2617 2.1370 22 1 -0.3160 -1.8564 2.2013 23 1 -0.9810 -4.2223 2.0983 24 1 1.0732 -6.9870 0.5552 25 1 -1.3955 -5.9362 2.0003 26 1 2.6837 -5.1443 0.0717 27 1 3.3245 -2.7717 0.1741 There are 42 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 42 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380407715.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:26:41 Heat of formation + Delta-G solvation = -16.023249 kcal Electronic energy + Delta-G solvation = -15231.646415 eV Core-core repulsion = 11933.108097 eV Total energy + Delta-G solvation = -3298.538318 eV No. of doubly occupied orbitals = 42 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49957 -38.70004 -38.61163 -38.53343 -36.92353 -34.82033 -32.05327 -31.74594 -28.27968 -24.45719 -23.43748 -22.00392 -20.32363 -17.56994 -16.67073 -16.34547 -15.80901 -15.56214 -15.00410 -14.56168 -14.29071 -13.75869 -13.69689 -13.35151 -12.58505 -12.31694 -12.00359 -11.81896 -11.72577 -11.48353 -10.69164 -10.07866 -9.89835 -9.43206 -9.42479 -9.32068 -9.25629 -8.58328 -8.50167 -8.45874 -7.94286 -7.85935 -5.80985 -0.11940 -0.01641 0.48047 1.10106 1.45473 1.68542 1.69445 2.01219 2.87945 3.54656 3.72393 3.89030 3.95313 4.04537 4.09277 4.23388 4.42733 4.49505 4.67618 4.84841 4.88983 5.10045 5.16002 5.32377 5.38743 5.65134 5.68590 5.80156 6.05580 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.055964 B = 0.004775 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.203024 B = 5862.374959 C = 6040.997785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.477 6.477 2 C -0.123 4.123 3 Si 1.108 2.892 4 H -0.166 1.166 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.096 4.096 8 C -0.082 4.082 9 C -0.091 4.091 10 C -0.149 4.149 11 C -0.033 4.033 12 C -0.192 4.192 13 C 0.288 3.712 14 F -0.838 7.838 15 F -0.832 7.832 16 F -0.833 7.833 17 C -0.113 4.113 18 C -0.086 4.086 19 H 0.138 0.862 20 H 0.145 0.855 21 H 0.097 0.903 22 H 0.143 0.857 23 H 0.107 0.893 24 H 0.113 0.887 25 H 0.180 0.820 26 H 0.136 0.864 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.786 55.775 -4.731 61.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.417 6.417 2 C -0.225 4.225 3 Si 0.906 3.094 4 H -0.089 1.089 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.133 4.133 8 C -0.082 4.082 9 C -0.108 4.108 10 C -0.167 4.167 11 C -0.034 4.034 12 C -0.210 4.210 13 C 0.258 3.742 14 F -0.833 7.833 15 F -0.827 7.827 16 F -0.828 7.828 17 C -0.131 4.131 18 C -0.103 4.103 19 H 0.154 0.846 20 H 0.163 0.837 21 H 0.116 0.884 22 H 0.160 0.840 23 H 0.125 0.875 24 H 0.130 0.870 25 H 0.197 0.803 26 H 0.154 0.846 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 25.679 56.374 -4.720 62.127 hybrid contribution -1.750 -3.032 0.032 3.501 sum 23.929 53.342 -4.688 58.651 Atomic orbital electron populations 1.94951 1.15240 1.34816 1.96713 1.28228 0.91816 1.00744 1.01710 0.85589 0.80541 0.63115 0.80158 1.08911 1.19482 1.18594 1.21512 1.04898 0.88238 0.98627 1.20137 0.93913 0.96296 0.97839 1.21127 0.97373 0.93123 0.99222 1.21464 0.99375 0.94855 1.01001 1.18664 0.97634 0.86003 1.01088 1.22377 0.97035 0.96377 1.05239 1.29535 0.94089 0.54678 0.95894 1.99872 1.98134 1.87066 1.98228 1.99876 1.98819 1.88072 1.95944 1.99877 1.92644 1.91787 1.98460 1.21430 0.93887 0.98492 0.99273 1.21418 1.01111 0.89924 0.97891 0.84620 0.83672 0.88414 0.83967 0.87471 0.86960 0.80324 0.84631 0.79515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.48 -20.59 17.53 -148.98 -2.61 -23.20 15 2 C -0.12 -3.56 2.59 71.98 0.19 -3.37 15 3 Si 1.11 20.58 28.53 68.60 1.96 22.54 15 4 H -0.17 -1.71 7.11 99.48 0.71 -1.01 15 5 H -0.27 -5.93 7.11 99.48 0.71 -5.23 15 6 H -0.26 -5.54 7.11 99.48 0.71 -4.83 15 7 C -0.10 -2.67 4.44 29.85 0.13 -2.54 15 8 C -0.08 -3.30 4.97 -19.81 -0.10 -3.40 15 9 C -0.09 -4.47 9.39 22.23 0.21 -4.27 15 10 C -0.15 -9.20 9.40 22.52 0.21 -8.99 15 11 C -0.03 -2.27 5.87 -20.12 -0.12 -2.39 15 12 C -0.19 -17.57 9.36 23.65 0.22 -17.35 15 13 C 0.29 31.37 10.43 66.67 0.70 32.07 15 14 F -0.84 -126.23 17.16 44.97 0.77 -125.45 15 15 F -0.83 -126.74 18.43 44.97 0.83 -125.91 15 16 F -0.83 -127.10 18.42 44.97 0.83 -126.28 15 17 C -0.11 -6.11 9.79 22.52 0.22 -5.89 15 18 C -0.09 -3.48 9.68 22.23 0.22 -3.26 15 19 H 0.14 3.53 7.96 -2.39 -0.02 3.51 15 20 H 0.15 2.47 7.78 -2.39 -0.02 2.46 15 21 H 0.10 2.60 8.01 -2.39 -0.02 2.59 15 22 H 0.14 6.41 8.06 -2.91 -0.02 6.38 15 23 H 0.11 6.94 6.17 -2.91 -0.02 6.93 15 24 H 0.11 11.12 7.14 -2.91 -0.02 11.10 15 25 H 0.18 16.96 6.04 -2.91 -0.02 16.94 15 26 H 0.14 7.05 8.06 -2.91 -0.02 7.03 15 27 H 0.19 5.17 8.06 -2.91 -0.02 5.15 15 Total: -2.00 -352.28 264.57 5.59 -346.69 By element: Atomic # 1 Polarization: 49.06 SS G_CDS: 1.94 Total: 51.00 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 1.88 Total: -19.38 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -2.61 Total: -23.20 kcal Atomic # 9 Polarization: -380.07 SS G_CDS: 2.43 Total: -377.64 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: 1.96 Total: 22.54 kcal Total: -352.28 5.59 -346.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380407715.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 330.667 kcal (2) G-P(sol) polarization free energy of solvation -352.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -346.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds