Wall clock time and date at job start Tue Mar 17 2020 17:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47284 * 2 1 4 4 H 1.48502 * 109.47127 * 300.00441 * 3 2 1 5 5 H 1.48497 * 109.47169 * 59.99814 * 3 2 1 6 6 H 1.48499 * 109.47157 * 180.02562 * 3 2 1 7 7 C 1.50709 * 109.46885 * 239.99861 * 2 1 3 8 8 C 1.30871 * 125.09053 * 239.99720 * 7 2 1 9 9 C 1.49006 * 116.98126 * 180.27479 * 8 7 2 10 10 C 1.50865 * 111.39232 * 359.52693 * 9 8 7 11 11 S 1.76451 * 125.09007 * 60.00118 * 7 2 1 12 12 N 1.39800 * 127.54593 * 180.13368 * 10 9 8 13 13 H 1.00905 * 112.96637 * 54.49328 * 12 10 9 14 14 C 1.47607 * 113.46263 * 185.43626 * 12 10 9 15 15 C 1.53621 * 88.07776 * 141.05811 * 14 12 10 16 16 C 1.46792 * 113.46156 * 283.46404 * 12 10 9 17 17 C 1.53687 * 115.02115 * 101.76847 * 16 12 10 18 18 C 1.55030 * 104.02567 * 207.14146 * 17 16 12 19 19 C 1.54942 * 102.83607 * 37.41574 * 18 17 16 20 20 C 1.53291 * 115.26230 * 336.17034 * 16 12 10 21 21 H 1.09001 * 109.47117 * 120.00682 * 2 1 3 22 22 H 1.07998 * 121.51644 * 0.02562 * 8 7 2 23 23 H 1.09007 * 109.10329 * 120.23528 * 9 8 7 24 24 H 1.08994 * 109.11072 * 239.21923 * 9 8 7 25 25 H 1.09002 * 113.45253 * 255.85802 * 14 12 10 26 26 H 1.08998 * 113.45471 * 26.19829 * 14 12 10 27 27 H 1.08994 * 114.20407 * 88.12952 * 15 14 12 28 28 H 1.09004 * 114.20088 * 220.93779 * 15 14 12 29 29 H 1.09004 * 110.51477 * 325.77365 * 17 16 12 30 30 H 1.08997 * 110.51697 * 88.50639 * 17 16 12 31 31 H 1.09002 * 110.73808 * 279.08014 * 18 17 16 32 32 H 1.08998 * 110.74398 * 155.75504 * 18 17 16 33 33 H 1.09008 * 110.47914 * 203.69754 * 19 18 17 34 34 H 1.08994 * 110.59395 * 81.12503 * 19 18 17 35 35 H 1.08993 * 110.08477 * 248.55622 * 20 16 12 36 36 H 1.09004 * 110.08161 * 10.05981 * 20 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 -1.2125 5 1 1.5550 2.4564 1.2124 6 1 3.5350 1.7563 -0.0006 7 6 1.9313 -0.7105 -1.2305 8 6 2.6869 -1.7790 -1.2266 9 6 3.0847 -2.3307 -2.5524 10 6 2.5029 -1.5189 -3.6831 11 16 1.5888 -0.2261 -2.8923 12 7 2.6575 -1.7363 -5.0554 13 1 2.3943 -2.6684 -5.3385 14 6 2.0567 -0.6771 -5.8897 15 6 3.2661 -0.8025 -6.8286 16 6 3.9663 -1.3154 -5.5700 17 6 4.9695 -2.4556 -5.8054 18 6 6.3541 -1.7774 -5.6425 19 6 6.1115 -0.7725 -4.4884 20 6 4.6822 -0.2443 -4.7394 21 1 1.7923 -0.5139 0.8899 22 1 3.0109 -2.2379 -0.3042 23 1 4.1720 -2.3264 -2.6289 24 1 2.7273 -3.3572 -2.6335 25 1 1.1153 -0.9718 -6.3533 26 1 1.9947 0.2881 -5.3871 27 1 3.1484 -1.5518 -7.6113 28 1 3.6478 0.1505 -7.1952 29 1 4.8382 -3.2399 -5.0599 30 1 4.8585 -2.8606 -6.8112 31 1 6.6378 -1.2549 -6.5561 32 1 7.1121 -2.5094 -5.3640 33 1 6.8332 0.0431 -4.5349 34 1 6.1681 -1.2760 -3.5234 35 1 4.7217 0.6940 -5.2925 36 1 4.1645 -0.0979 -3.7913 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725674447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:12:35 Heat of formation + Delta-G solvation = 33.167682 kcal Electronic energy + Delta-G solvation = -17720.064956 eV Core-core repulsion = 15105.371363 eV Total energy + Delta-G solvation = -2614.693593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36605 -36.23199 -34.79691 -31.37253 -29.87122 -29.03764 -27.37815 -26.27439 -22.97421 -22.24417 -21.17022 -20.57482 -19.56916 -18.39827 -16.88958 -16.43688 -15.36413 -15.12728 -14.56426 -13.84770 -13.57522 -13.26594 -13.24812 -12.64778 -12.41532 -12.28214 -11.97348 -11.52728 -11.43616 -11.32813 -11.06640 -10.94528 -10.76110 -10.62042 -10.42211 -10.14925 -9.90505 -9.66657 -9.32152 -8.33002 -8.12271 -6.76042 -5.50014 -4.91903 -4.51047 2.62430 3.48298 3.62297 3.71068 3.84703 3.89539 3.95727 4.01684 4.26464 4.33937 4.50472 4.73792 4.80272 5.02325 5.06395 5.10386 5.28379 5.31186 5.39695 5.41814 5.47891 5.58132 5.60602 5.82195 5.92099 6.01902 6.19979 6.31417 6.35088 6.78718 6.91734 7.02316 7.12000 7.22133 7.74007 7.84751 8.14573 8.40505 10.38902 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029597 B = 0.007860 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.806986 B = 3561.632256 C = 3751.151150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.860 6.860 2 C 0.053 3.947 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.303 1.303 7 C -0.048 4.048 8 C -0.260 4.260 9 C 0.079 3.921 10 C -0.659 4.659 11 S -0.065 6.065 12 N -0.180 5.180 13 H 0.371 0.629 14 C 0.017 3.983 15 C -0.160 4.160 16 C 0.020 3.980 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.113 4.113 21 H -0.012 1.012 22 H 0.103 0.897 23 H 0.005 0.995 24 H -0.001 1.001 25 H 0.106 0.894 26 H 0.133 0.867 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -4.143 -19.873 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.807 6.807 2 C -0.068 4.068 3 Si 0.710 3.290 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.232 1.232 7 C -0.163 4.163 8 C -0.290 4.290 9 C 0.040 3.960 10 C -0.865 4.865 11 S 0.176 5.824 12 N 0.248 4.752 13 H 0.210 0.790 14 C -0.107 4.107 15 C -0.198 4.198 16 C -0.060 4.060 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.151 4.151 21 H 0.005 0.995 22 H 0.121 0.879 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.124 0.876 26 H 0.151 0.849 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.113 -2.238 -20.283 23.730 hybrid contribution 0.789 -1.793 0.490 2.019 sum 12.901 -4.030 -19.793 23.968 Atomic orbital electron populations 1.94954 1.02458 1.90426 1.92880 1.22300 0.99932 0.96689 0.87869 0.87311 0.74177 0.89044 0.78486 1.19591 1.21251 1.23169 1.25466 0.94423 0.98325 0.98067 1.21985 1.08587 1.01597 0.96858 1.17614 0.94761 0.94552 0.89036 1.22587 1.54914 1.27812 0.81188 1.82331 1.64451 1.34931 1.00693 1.41360 1.12179 1.11406 1.10277 0.78993 1.24553 0.99107 0.95967 0.91076 1.23738 0.95624 1.04114 0.96326 1.24621 0.90508 0.97814 0.93081 1.22483 0.94928 0.96829 1.01736 1.22451 0.95818 0.98348 0.98995 1.22349 0.96321 0.98420 0.98707 1.22180 0.95032 0.94512 1.03334 0.99546 0.87910 0.97707 0.98242 0.87578 0.84907 0.88304 0.87992 0.90233 0.91052 0.91512 0.91467 0.91681 0.91049 0.91558 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.86 -34.28 18.01 -35.23 -0.63 -34.91 16 2 C 0.05 1.76 3.07 36.01 0.11 1.87 16 3 Si 0.88 25.49 28.03 -169.99 -4.77 20.73 16 4 H -0.27 -7.91 7.11 56.52 0.40 -7.51 16 5 H -0.29 -8.27 7.11 56.52 0.40 -7.86 16 6 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 7 C -0.05 -1.45 4.82 -35.99 -0.17 -1.62 16 8 C -0.26 -7.00 10.17 -36.80 -0.37 -7.38 16 9 C 0.08 1.78 6.25 -29.76 -0.19 1.60 16 10 C -0.66 -13.06 4.59 -8.56 -0.04 -13.10 16 11 S -0.07 -1.69 19.96 -107.50 -2.15 -3.83 16 12 N -0.18 -2.26 1.11 -162.94 -0.18 -2.44 16 13 H 0.37 3.78 8.71 -39.29 -0.34 3.44 16 14 C 0.02 0.18 7.11 -8.53 -0.06 0.11 16 15 C -0.16 -1.10 7.63 -26.47 -0.20 -1.30 16 16 C 0.02 0.20 1.09 -136.64 -0.15 0.05 16 17 C -0.12 -1.05 6.27 -25.30 -0.16 -1.21 16 18 C -0.12 -1.03 6.91 -24.63 -0.17 -1.20 16 19 C -0.12 -1.37 6.84 -24.96 -0.17 -1.54 16 20 C -0.11 -1.46 5.76 -25.83 -0.15 -1.60 16 21 H -0.01 -0.40 7.90 -51.93 -0.41 -0.81 16 22 H 0.10 2.66 8.06 -52.49 -0.42 2.24 16 23 H 0.00 0.10 8.14 -51.92 -0.42 -0.32 16 24 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 25 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.13 1.75 6.82 -51.93 -0.35 1.40 16 27 H 0.10 0.44 7.98 -51.93 -0.41 0.02 16 28 H 0.10 0.63 7.87 -51.93 -0.41 0.22 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.45 7.83 -51.93 -0.41 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 36 H 0.13 2.30 5.60 -51.93 -0.29 2.01 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -43.80 292.58 -10.67 -54.47 By element: Atomic # 1 Polarization: -7.49 SS G_CDS: -5.63 Total: -13.12 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -1.72 Total: -25.30 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -0.18 Total: -2.44 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.63 Total: -34.91 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.77 Total: 20.73 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.15 Total: -3.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -43.80 -10.67 -54.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.641 kcal (2) G-P(sol) polarization free energy of solvation -43.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds