Wall clock time and date at job start Tue Mar 17 2020 17:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29191 * 124.12900 * 2 1 4 4 C 1.47264 * 106.20969 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.54578 * 118.60634 * 4 3 2 6 6 C 1.53001 * 110.66051 * 241.33742 * 4 3 2 7 7 N 1.47256 * 103.91595 * 359.97438 * 4 3 2 8 8 N 1.28850 * 106.31378 * 0.02562 * 7 4 3 9 9 C 1.33165 * 124.08574 * 179.73180 * 8 7 4 10 10 C 1.39785 * 119.99885 * 352.80072 * 9 8 7 11 11 C 1.34969 * 123.77146 * 185.17590 * 10 9 8 12 12 S 1.76077 * 109.03122 * 179.88086 * 11 10 9 13 13 C 1.59862 * 99.10230 * 0.35854 * 12 11 10 14 14 C 1.50705 * 125.92341 * 179.84687 * 13 12 11 15 15 O 1.42891 * 109.47536 * 149.95598 * 14 13 12 16 16 Si 1.86301 * 109.46835 * 29.95311 * 14 13 12 17 17 H 1.48503 * 109.47418 * 300.00542 * 16 14 13 18 18 H 1.48502 * 109.47079 * 60.00626 * 16 14 13 19 19 H 1.48500 * 109.47264 * 180.02562 * 16 14 13 20 20 C 1.49466 * 123.76950 * 5.47693 * 10 9 8 21 21 H 1.09000 * 109.46853 * 270.00062 * 1 2 3 22 22 H 1.08998 * 109.47028 * 29.99994 * 1 2 3 23 23 H 1.08998 * 109.46600 * 150.00090 * 1 2 3 24 24 H 1.09001 * 109.47369 * 174.57005 * 6 4 3 25 25 H 1.09001 * 109.46784 * 294.56525 * 6 4 3 26 26 H 1.09002 * 109.47643 * 54.56275 * 6 4 3 27 27 H 0.97003 * 126.84337 * 180.02562 * 7 4 3 28 28 H 1.07994 * 120.00069 * 172.79918 * 9 8 7 29 29 H 1.08002 * 125.48022 * 359.97438 * 11 10 9 30 30 H 1.08999 * 109.46813 * 269.96109 * 14 13 12 31 31 H 0.96704 * 114.00155 * 180.02562 * 15 14 13 32 32 H 1.09004 * 109.12828 * 300.47028 * 20 10 9 33 33 H 1.08993 * 109.13355 * 59.52823 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2319 1.0694 0.0000 4 6 3.6331 0.6163 -0.0006 5 1 4.1471 0.9638 -0.8968 6 6 4.3585 1.1033 1.2554 7 7 3.5303 -0.8526 -0.0003 8 7 2.2714 -1.1274 -0.0002 9 6 1.7774 -2.3640 -0.0051 10 6 2.6333 -3.4579 -0.1625 11 6 2.2072 -4.7332 -0.2794 12 16 3.6033 -5.7906 -0.4616 13 6 4.7631 -4.6928 -0.3896 14 6 6.2429 -4.9625 -0.4833 15 8 6.8971 -3.8333 -1.0653 16 14 6.5342 -6.4648 -1.5459 17 1 5.8544 -7.6384 -0.9411 18 1 5.9882 -6.2228 -2.9055 19 1 7.9923 -6.7310 -1.6377 20 6 4.1230 -3.3466 -0.2136 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5138 24 1 5.3620 0.6785 1.2832 25 1 4.4248 2.1911 1.2379 26 1 3.8055 0.7872 2.1400 27 1 4.2641 -1.4871 -0.0002 28 1 0.7156 -2.5217 0.1126 29 1 1.1758 -5.0533 -0.2652 30 1 6.6437 -5.1401 0.5147 31 1 7.8541 -3.9371 -1.1569 32 1 4.4048 -2.7050 -1.0484 33 1 4.4799 -2.8999 0.7143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725674211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:31:56 Heat of formation + Delta-G solvation = 440.051649 kcal Electronic energy + Delta-G solvation = -17245.610214 eV Core-core repulsion = 14531.364351 eV Total energy + Delta-G solvation = -2714.245863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.091 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.88690 -44.22438 -41.73805 -40.43936 -39.37316 -37.05506 -34.49730 -33.47688 -32.57282 -31.40271 -28.09888 -27.53325 -26.40889 -26.10758 -23.69769 -22.53167 -22.08443 -21.82905 -21.46889 -21.07555 -20.79459 -19.92058 -19.59259 -19.16376 -18.66804 -18.41442 -18.18635 -17.85586 -17.77520 -17.64996 -16.92243 -16.74574 -16.53773 -16.50085 -16.31655 -16.11453 -15.85430 -15.72489 -15.37238 -15.07458 -15.03728 -14.04227 -13.28218 -6.38193 -5.55037 -4.85492 -4.10081 -3.77500 -3.75171 -2.81753 -2.63622 -2.03392 -2.00923 -1.61891 -1.57105 -1.39478 -1.14481 -0.97129 -0.93757 -0.80223 -0.66527 -0.62112 -0.50998 -0.22310 -0.00148 0.07951 0.26752 0.41063 0.47711 0.52086 0.58924 0.83918 1.04771 1.35583 1.51878 1.53467 1.78244 2.00776 2.18641 2.32438 3.07080 Molecular weight = 255.09amu Principal moments of inertia in cm(-1) A = 0.028761 B = 0.007161 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.295556 B = 3909.074342 C = 4721.624469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.282 3.718 3 N -0.357 5.357 4 C 0.228 3.772 5 H 0.177 0.823 6 C -0.159 4.159 7 N -0.588 5.588 8 N -0.102 5.102 9 C 0.204 3.796 10 C -0.101 4.101 11 C -0.183 4.183 12 S 0.765 5.235 13 C -0.156 4.156 14 C -0.088 4.088 15 O -0.540 6.540 16 Si 0.884 3.116 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.182 1.182 20 C -0.169 4.169 21 H 0.130 0.870 22 H 0.138 0.862 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.468 0.532 28 H 0.250 0.750 29 H 0.246 0.754 30 H 0.160 0.840 31 H 0.424 0.576 32 H 0.192 0.808 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -5.109 1.839 7.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.008 3.992 3 N -0.068 5.068 4 C 0.037 3.963 5 H 0.193 0.807 6 C -0.217 4.217 7 N -0.346 5.346 8 N 0.142 4.858 9 C 0.016 3.984 10 C -0.104 4.104 11 C -0.323 4.323 12 S 1.013 4.987 13 C -0.280 4.280 14 C -0.195 4.195 15 O -0.353 6.353 16 Si 0.694 3.306 17 H -0.122 1.122 18 H -0.134 1.134 19 H -0.102 1.102 20 C -0.206 4.206 21 H 0.148 0.852 22 H 0.156 0.844 23 H 0.129 0.871 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.099 0.901 27 H 0.332 0.668 28 H 0.266 0.734 29 H 0.262 0.738 30 H 0.176 0.824 31 H 0.279 0.721 32 H 0.208 0.792 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.644 -4.984 1.191 6.916 hybrid contribution 1.492 1.182 0.543 1.980 sum -3.153 -3.802 1.735 5.235 Atomic orbital electron populations 1.21400 0.77934 1.09007 1.08376 1.25902 0.98141 0.77691 0.97509 1.76071 1.01905 1.22018 1.06825 1.24844 0.92493 0.72339 1.06656 0.80671 1.22317 1.00903 1.06369 0.92103 1.48802 0.95248 1.13857 1.76666 1.42605 1.01532 1.09894 1.31729 1.23616 1.02865 0.78264 0.93697 1.19328 0.93549 0.94909 1.02570 1.28616 1.10193 0.95572 0.97934 1.83072 0.84729 0.99795 1.31117 1.29969 1.09423 1.04952 0.83675 1.25193 0.83793 1.02476 1.08074 1.86297 1.28944 1.37002 1.83065 0.86621 0.91616 0.72142 0.80236 1.12195 1.13396 1.10207 1.21235 0.90904 0.99105 1.09332 0.85235 0.84407 0.87138 0.88254 0.86188 0.90146 0.66766 0.73395 0.73793 0.82388 0.72079 0.79221 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 4.21 9.92 36.01 0.36 4.57 16 2 C 0.28 -10.67 7.70 -155.41 -1.20 -11.87 16 3 N -0.36 12.05 11.59 -53.93 -0.63 11.43 16 4 C 0.23 -8.31 5.01 -125.98 -0.63 -8.94 16 5 H 0.18 -6.51 8.14 -51.93 -0.42 -6.94 16 6 C -0.16 5.47 9.96 37.16 0.37 5.84 16 7 N -0.59 24.08 6.23 -6.84 -0.04 24.03 16 8 N -0.10 4.24 3.30 -9.85 -0.03 4.20 16 9 C 0.20 -9.28 10.10 -16.40 -0.17 -9.45 16 10 C -0.10 4.62 5.85 -105.80 -0.62 4.00 16 11 C -0.18 8.53 11.09 29.57 0.33 8.86 16 12 S 0.76 -33.99 19.82 -107.50 -2.13 -36.12 16 13 C -0.16 6.74 5.77 -29.32 -0.17 6.57 16 14 C -0.09 3.53 3.07 36.01 0.11 3.64 16 15 O -0.54 20.58 12.57 -35.23 -0.44 20.14 16 16 Si 0.88 -31.70 26.68 -169.99 -4.53 -36.24 16 17 H -0.20 7.28 7.11 56.52 0.40 7.68 16 18 H -0.21 7.22 7.11 56.52 0.40 7.63 16 19 H -0.18 5.84 7.11 56.52 0.40 6.24 16 20 C -0.17 7.61 3.69 -29.92 -0.11 7.50 16 21 H 0.13 -5.04 8.14 -51.93 -0.42 -5.47 16 22 H 0.14 -4.98 8.14 -51.93 -0.42 -5.40 16 23 H 0.11 -4.67 7.04 -51.93 -0.37 -5.03 16 24 H 0.10 -3.53 8.14 -51.93 -0.42 -3.95 16 25 H 0.12 -3.84 8.14 -51.93 -0.42 -4.26 16 26 H 0.08 -2.69 8.14 -51.93 -0.42 -3.11 16 27 H 0.47 -20.40 3.85 -190.21 -0.73 -21.14 16 28 H 0.25 -12.26 6.88 -52.49 -0.36 -12.63 16 29 H 0.25 -12.01 8.06 -52.49 -0.42 -12.44 16 30 H 0.16 -6.75 7.96 -51.93 -0.41 -7.16 16 31 H 0.42 -16.59 8.74 45.56 0.40 -16.20 16 32 H 0.19 -8.66 6.90 -51.93 -0.36 -9.02 16 33 H 0.19 -8.78 6.98 -51.93 -0.36 -9.15 16 LS Contribution 278.94 15.07 4.20 4.20 Total: 2.00 -88.67 278.94 -9.28 -97.96 By element: Atomic # 1 Polarization: -96.39 SS G_CDS: -3.95 Total: -100.34 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.73 Total: 10.73 kcal Atomic # 7 Polarization: 40.37 SS G_CDS: -0.70 Total: 39.66 kcal Atomic # 8 Polarization: 20.58 SS G_CDS: -0.44 Total: 20.14 kcal Atomic # 14 Polarization: -31.70 SS G_CDS: -4.53 Total: -36.24 kcal Atomic # 16 Polarization: -33.99 SS G_CDS: -2.13 Total: -36.12 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -88.67 -9.28 -97.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 538.008 kcal (2) G-P(sol) polarization free energy of solvation -88.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 449.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 440.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds