Wall clock time and date at job start Tue Mar 17 2020 17:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.14408 * 2 1 4 4 N 1.46844 * 110.31341 * 238.48319 * 2 1 3 5 5 C 1.30222 * 107.08520 * 241.11294 * 4 2 1 6 6 C 1.47302 * 125.26594 * 179.86336 * 5 4 2 7 7 S 1.72039 * 127.59688 * 180.02562 * 6 5 4 8 8 C 1.76520 * 96.66169 * 180.08387 * 7 6 5 9 9 C 1.50703 * 125.22161 * 179.88901 * 8 7 6 10 10 O 1.42905 * 109.47264 * 154.69655 * 9 8 7 11 11 Si 1.86299 * 109.47187 * 34.69797 * 9 8 7 12 12 H 1.48503 * 109.47188 * 180.02562 * 11 9 8 13 13 H 1.48506 * 109.46753 * 299.99629 * 11 9 8 14 14 H 1.48492 * 109.47301 * 59.99921 * 11 9 8 15 15 N 1.27676 * 109.55670 * 359.62620 * 8 7 6 16 16 C 1.44751 * 117.40033 * 0.26358 * 15 8 7 17 17 H 1.08992 * 109.07022 * 120.55408 * 16 15 8 18 18 C 1.52999 * 109.06758 * 239.55991 * 16 15 8 19 19 C 1.47751 * 109.46806 * 359.60326 * 5 4 2 20 20 N 1.28910 * 109.77034 * 0.26105 * 19 5 4 21 21 C 1.46493 * 126.24036 * 179.97438 * 20 19 5 22 22 H 1.08999 * 109.47106 * 298.36301 * 1 2 3 23 23 H 1.09003 * 109.47292 * 58.36589 * 1 2 3 24 24 H 1.09008 * 109.46902 * 178.36256 * 1 2 3 25 25 H 1.09004 * 109.47113 * 274.69653 * 9 8 7 26 26 H 0.96702 * 113.99404 * 300.00033 * 10 9 8 27 27 H 1.08997 * 109.47512 * 58.54708 * 18 16 15 28 28 H 1.09005 * 109.47193 * 178.54908 * 18 16 15 29 29 H 1.08999 * 109.46828 * 298.54279 * 18 16 15 30 30 H 1.07993 * 125.11471 * 180.28750 * 19 5 4 31 31 H 1.09005 * 109.47509 * 0.02727 * 21 20 19 32 32 H 1.09001 * 109.47257 * 120.02577 * 21 20 19 33 33 H 1.09002 * 109.47327 * 240.02426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9054 1.0234 0.0000 4 7 2.0397 -0.7199 -1.1740 5 6 2.7365 -1.7274 -0.7321 6 6 3.4282 -2.7179 -1.5749 7 16 4.3612 -4.0676 -1.0575 8 6 4.7813 -4.6556 -2.6680 9 6 5.6281 -5.8682 -2.9570 10 8 5.2949 -6.3855 -4.2469 11 14 5.3088 -7.1711 -1.6642 12 1 6.1437 -8.3658 -1.9486 13 1 5.6551 -6.6336 -0.3238 14 1 3.8738 -7.5520 -1.6892 15 7 4.2531 -3.8990 -3.5505 16 6 3.4690 -2.7760 -3.0821 17 1 3.9064 -1.8529 -3.4623 18 6 2.0404 -2.9076 -3.6138 19 6 2.7310 -1.7197 0.7453 20 7 2.0349 -0.7229 1.1736 21 6 1.7915 -0.3754 2.5758 22 1 -0.3633 0.4882 0.9043 23 1 -0.3634 0.5390 -0.8750 24 1 -0.3633 -1.0273 -0.0294 25 1 6.6815 -5.5886 -2.9387 26 1 4.3705 -6.6551 -4.3357 27 1 1.6111 -3.8497 -3.2729 28 1 1.4371 -2.0785 -3.2437 29 1 2.0550 -2.8881 -4.7035 30 1 3.2348 -2.4405 1.3721 31 1 2.2944 -1.0955 3.2213 32 1 2.1790 0.6238 2.7751 33 1 0.7199 -0.3957 2.7745 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725674250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:31:39 Heat of formation + Delta-G solvation = 325.980626 kcal Electronic energy + Delta-G solvation = -16868.773982 eV Core-core repulsion = 14149.581628 eV Total energy + Delta-G solvation = -2719.192354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.091 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.35377 -41.32246 -38.39044 -37.29894 -34.83773 -33.49769 -30.42093 -30.02849 -29.24936 -26.98431 -24.73018 -23.91453 -23.37839 -21.74653 -20.34357 -19.21415 -18.65803 -18.17901 -17.88545 -17.43298 -16.92481 -16.64564 -16.48635 -15.87892 -15.64638 -15.27442 -14.81401 -14.46495 -14.34330 -13.87318 -13.72734 -13.66303 -13.41658 -13.33951 -13.16143 -13.02101 -12.76030 -12.72609 -12.47456 -12.14301 -11.85342 -11.71040 -10.87445 -3.57961 -1.95958 -1.92055 -1.05545 -0.65307 -0.08453 -0.08381 0.59615 0.67384 0.98992 1.16115 1.36172 1.59604 1.72093 2.14941 2.38300 2.61516 2.77635 2.91414 3.01905 3.07984 3.24411 3.30189 3.36786 3.91140 4.02798 4.08567 4.17278 4.21367 4.22053 4.25399 4.31136 4.52474 4.65740 4.85459 4.89763 5.04018 6.38354 Molecular weight = 255.09amu Principal moments of inertia in cm(-1) A = 0.033271 B = 0.006619 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.362676 B = 4229.350945 C = 4833.123245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.229 0.771 4 N -0.295 5.295 5 C 0.139 3.861 6 C 0.006 3.994 7 S 0.625 5.375 8 C 0.043 3.957 9 C -0.056 4.056 10 O -0.536 6.536 11 Si 0.900 3.100 12 H -0.265 1.265 13 H -0.159 1.159 14 H -0.224 1.224 15 N -0.393 5.393 16 C 0.020 3.980 17 H 0.226 0.774 18 C -0.130 4.130 19 C 0.281 3.719 20 N -0.373 5.373 21 C 0.020 3.980 22 H 0.120 0.880 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.175 0.825 26 H 0.398 0.602 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.309 0.691 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 9.979 16.010 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.027 4.027 3 H 0.245 0.755 4 N -0.015 5.015 5 C -0.044 4.044 6 C -0.126 4.126 7 S 0.872 5.128 8 C -0.254 4.254 9 C -0.169 4.169 10 O -0.343 6.343 11 Si 0.716 3.284 12 H -0.189 1.189 13 H -0.081 1.081 14 H -0.146 1.146 15 N -0.101 5.101 16 C -0.096 4.096 17 H 0.241 0.759 18 C -0.190 4.190 19 C 0.090 3.910 20 N -0.035 5.035 21 C -0.116 4.116 22 H 0.138 0.862 23 H 0.125 0.875 24 H 0.109 0.891 25 H 0.192 0.808 26 H 0.249 0.751 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.324 0.676 31 H 0.181 0.819 32 H 0.156 0.844 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.103 10.061 16.078 19.640 hybrid contribution -0.547 0.652 -1.223 1.490 sum -5.649 10.712 14.854 19.166 Atomic orbital electron populations 1.22321 0.83397 1.06851 1.08552 1.25759 1.01413 1.01462 0.74069 0.75539 1.75787 0.97495 1.00053 1.28145 1.20989 0.98856 0.94060 0.90483 1.30173 0.86130 0.94256 1.01992 1.85276 1.19668 1.01760 1.06098 1.30465 1.00915 1.01589 0.92454 1.25532 1.02656 0.92932 0.95738 1.86737 1.35021 1.82504 1.30006 0.86437 0.83822 0.80156 0.77945 1.18944 1.08124 1.14598 1.71332 1.04041 1.01139 1.33613 1.23542 1.00553 0.98971 0.86567 0.75919 1.22087 0.85665 1.06191 1.05106 1.27701 0.82186 0.87938 0.93150 1.48686 1.24213 1.16088 1.14537 1.23996 1.09148 1.08889 0.69523 0.86201 0.87495 0.89107 0.80834 0.75122 0.89113 0.86907 0.88926 0.67613 0.81948 0.84361 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 12.16 9.70 71.98 0.70 12.86 16 2 C 0.17 -14.20 4.55 129.33 0.59 -13.62 16 3 H 0.23 -19.92 8.14 -2.38 -0.02 -19.94 16 4 N -0.30 24.51 10.71 -318.49 -3.41 21.10 16 5 C 0.14 -12.44 7.05 44.29 0.31 -12.13 16 6 C 0.01 -0.51 6.26 28.13 0.18 -0.34 16 7 S 0.62 -53.78 20.70 -56.49 -1.17 -54.95 16 8 C 0.04 -3.14 6.63 88.71 0.59 -2.55 16 9 C -0.06 3.60 3.08 71.24 0.22 3.82 16 10 O -0.54 28.90 12.71 -148.98 -1.89 27.01 16 11 Si 0.90 -56.08 26.84 68.60 1.84 -54.24 16 12 H -0.27 12.93 7.11 99.48 0.71 13.63 16 13 H -0.16 11.36 7.11 99.48 0.71 12.06 16 14 H -0.22 13.97 7.11 99.48 0.71 14.68 16 15 N -0.39 26.90 10.33 -321.66 -3.32 23.58 16 16 C 0.02 -1.50 3.94 44.63 0.18 -1.33 16 17 H 0.23 -17.57 8.14 -2.39 -0.02 -17.59 16 18 C -0.13 9.42 9.41 71.98 0.68 10.10 16 19 C 0.28 -27.26 11.32 87.64 0.99 -26.27 16 20 N -0.37 34.35 2.96 -709.79 -2.10 32.25 16 21 C 0.02 -1.77 10.97 127.77 1.40 -0.37 16 22 H 0.12 -9.57 7.82 -2.39 -0.02 -9.59 16 23 H 0.11 -7.92 8.14 -2.39 -0.02 -7.94 16 24 H 0.09 -7.16 8.14 -2.38 -0.02 -7.18 16 25 H 0.17 -11.59 7.96 -2.38 -0.02 -11.61 16 26 H 0.40 -23.92 8.70 -74.06 -0.64 -24.56 16 27 H 0.09 -6.62 8.14 -2.39 -0.02 -6.63 16 28 H 0.11 -8.40 7.22 -2.38 -0.02 -8.42 16 29 H 0.09 -6.02 8.14 -2.39 -0.02 -6.04 16 30 H 0.31 -33.61 8.06 -2.91 -0.02 -33.63 16 31 H 0.16 -15.39 8.05 -2.38 -0.02 -15.41 16 32 H 0.14 -12.30 8.14 -2.39 -0.02 -12.32 16 33 H 0.14 -12.23 7.90 -2.39 -0.02 -12.25 16 Total: 2.00 -184.81 291.21 -3.00 -187.81 By element: Atomic # 1 Polarization: -153.95 SS G_CDS: 1.22 Total: -152.73 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 5.83 Total: -29.82 kcal Atomic # 7 Polarization: 85.76 SS G_CDS: -8.83 Total: 76.93 kcal Atomic # 8 Polarization: 28.90 SS G_CDS: -1.89 Total: 27.01 kcal Atomic # 14 Polarization: -56.08 SS G_CDS: 1.84 Total: -54.24 kcal Atomic # 16 Polarization: -53.78 SS G_CDS: -1.17 Total: -54.95 kcal Total: -184.81 -3.00 -187.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 513.790 kcal (2) G-P(sol) polarization free energy of solvation -184.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 328.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -187.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 325.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds