Wall clock time and date at job start Tue Mar 17 2020 17:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.04526 * 2 1 4 4 N 1.44751 * 109.06991 * 118.89906 * 2 1 3 5 5 C 1.27678 * 117.40534 * 120.55781 * 4 2 1 6 6 C 1.50698 * 125.22715 * 180.02562 * 5 4 2 7 7 O 1.42902 * 109.47078 * 30.02061 * 6 5 4 8 8 Si 1.86297 * 109.47395 * 150.02394 * 6 5 4 9 9 H 1.48503 * 109.47217 * 59.99532 * 8 6 5 10 10 H 1.48494 * 109.47153 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46752 * 299.99910 * 8 6 5 12 12 S 1.76529 * 109.54888 * 0.02562 * 5 4 2 13 13 C 1.50889 * 109.07137 * 240.98364 * 2 1 3 14 14 C 1.47300 * 127.59215 * 59.44374 * 13 2 1 15 15 N 1.30213 * 125.27066 * 0.02562 * 14 13 2 16 16 C 1.46851 * 107.08587 * 180.02562 * 15 14 13 17 17 H 1.08993 * 110.11556 * 240.76252 * 16 15 14 18 18 C 1.53000 * 110.11030 * 119.17662 * 16 15 14 19 19 N 1.46793 * 106.15668 * 0.02562 * 16 15 14 20 20 C 1.46508 * 126.23879 * 180.02562 * 19 16 15 21 21 C 1.28902 * 107.51663 * 359.70015 * 19 16 15 22 22 H 1.09002 * 109.47153 * 179.01413 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.01604 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.01585 * 1 2 3 25 25 H 1.09000 * 109.46714 * 270.02177 * 6 5 4 26 26 H 0.96703 * 113.99643 * 60.00245 * 7 6 5 27 27 H 1.08993 * 109.47355 * 61.45579 * 18 16 15 28 28 H 1.09003 * 109.46668 * 181.45502 * 18 16 15 29 29 H 1.08999 * 109.47104 * 301.45059 * 18 16 15 30 30 H 1.08998 * 109.47088 * 89.99989 * 20 19 16 31 31 H 1.09003 * 109.46689 * 209.99635 * 20 19 16 32 32 H 1.08997 * 109.46984 * 329.99608 * 20 19 16 33 33 H 1.08001 * 125.11275 * 180.24779 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8857 1.0304 0.0000 4 7 2.0029 -0.6611 1.1977 5 6 2.7396 -1.6931 1.0474 6 6 3.3254 -2.5135 2.1676 7 8 2.4583 -2.4586 3.3021 8 14 3.5096 -4.2820 1.6116 9 1 4.4107 -4.3390 0.4325 10 1 4.0863 -5.0904 2.7156 11 1 2.1778 -4.8263 1.2435 12 16 2.9664 -2.0113 -0.6741 13 6 2.0230 -0.6917 -1.2471 14 6 1.7558 -0.3188 -2.6468 15 7 1.0330 0.6941 -3.0302 16 6 1.0322 0.6924 -4.4987 17 1 1.4689 1.6175 -4.8749 18 6 -0.3961 0.5337 -5.0238 19 7 1.8501 -0.4564 -4.9062 20 6 2.1417 -0.8674 -6.2819 21 6 2.2706 -1.0335 -3.8331 22 1 -0.3633 -1.0275 -0.0177 23 1 -0.3633 0.5291 -0.8811 24 1 -0.3634 0.4985 0.8987 25 1 4.3029 -2.1139 2.4377 26 1 1.5689 -2.7990 3.1341 27 1 -1.0021 1.3752 -4.6884 28 1 -0.3817 0.5078 -6.1135 29 1 -0.8218 -0.3950 -4.6439 30 1 3.0510 -0.3732 -6.6238 31 1 2.2805 -1.9480 -6.3165 32 1 1.3105 -0.5870 -6.9288 33 1 2.9016 -1.9096 -3.8052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725674252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:31:44 Heat of formation + Delta-G solvation = 405.746912 kcal Electronic energy + Delta-G solvation = -16866.361094 eV Core-core repulsion = 14150.627666 eV Total energy + Delta-G solvation = -2715.733428 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.96695 -44.39992 -41.34911 -40.55344 -38.14243 -36.76269 -33.77574 -33.59837 -32.08240 -30.44629 -27.91979 -27.20087 -26.95405 -24.98756 -23.65921 -22.63044 -21.95075 -21.54584 -21.02746 -20.73094 -20.24408 -19.80883 -19.48735 -19.25398 -18.91893 -18.51954 -18.02294 -17.59606 -17.37931 -17.33618 -17.03263 -16.85278 -16.75874 -16.53781 -16.39708 -16.25092 -16.07801 -15.79905 -15.23201 -14.95603 -14.83645 -14.61037 -13.56268 -6.96419 -5.62689 -5.23142 -4.23484 -3.76253 -3.74642 -3.61956 -2.81255 -2.54022 -2.05871 -1.72430 -1.47508 -1.33902 -1.29040 -1.19162 -0.95492 -0.85102 -0.58488 -0.48160 -0.33704 -0.17428 0.05981 0.18184 0.23427 0.37598 0.38636 0.52654 0.68113 0.88819 0.92971 1.07235 1.17380 1.22033 1.43431 1.60478 1.82722 1.95820 3.69425 Molecular weight = 255.09amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.006652 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.379969 B = 4208.444579 C = 4831.942904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.023 3.977 3 H 0.224 0.776 4 N -0.345 5.345 5 C 0.069 3.931 6 C -0.056 4.056 7 O -0.491 6.491 8 Si 0.888 3.112 9 H -0.214 1.214 10 H -0.180 1.180 11 H -0.221 1.221 12 S 0.509 5.491 13 C -0.013 4.013 14 C 0.130 3.870 15 N -0.257 5.257 16 C 0.161 3.839 17 H 0.227 0.773 18 C -0.150 4.150 19 N -0.371 5.371 20 C 0.021 3.979 21 C 0.255 3.745 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.125 0.875 25 H 0.172 0.828 26 H 0.391 0.609 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 1.117 -16.495 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 H 0.239 0.761 4 N -0.052 5.052 5 C -0.229 4.229 6 C -0.169 4.169 7 O -0.296 6.296 8 Si 0.702 3.298 9 H -0.138 1.138 10 H -0.100 1.100 11 H -0.143 1.143 12 S 0.758 5.242 13 C -0.144 4.144 14 C -0.052 4.052 15 N 0.024 4.976 16 C -0.031 4.031 17 H 0.243 0.757 18 C -0.208 4.208 19 N -0.034 5.034 20 C -0.115 4.115 21 C 0.062 3.938 22 H 0.105 0.895 23 H 0.123 0.877 24 H 0.144 0.856 25 H 0.189 0.811 26 H 0.241 0.759 27 H 0.152 0.848 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.166 0.834 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.355 1.174 -16.518 16.563 hybrid contribution -0.457 0.860 -0.469 1.081 sum -0.102 2.035 -16.986 17.108 Atomic orbital electron populations 1.22202 0.81250 1.06461 1.08846 1.23780 1.03287 1.04050 0.78264 0.76066 1.71353 1.05572 1.03723 1.24510 1.31261 0.98372 0.96604 0.96641 1.25755 0.98474 1.08051 0.84619 1.86836 1.27108 1.86326 1.29323 0.86469 0.84803 0.73050 0.85498 1.13846 1.10034 1.14316 1.85789 1.23211 1.09128 1.06120 1.30377 0.88624 0.97461 0.97981 1.20846 0.99686 0.95288 0.89394 1.75795 1.01865 1.09811 1.10180 1.26076 0.98898 0.91872 0.86299 0.75739 1.22485 0.85150 1.08203 1.04993 1.48867 1.24477 1.18307 1.11714 1.23956 1.08715 1.06890 0.71908 1.26981 0.86737 0.94700 0.85338 0.89502 0.87661 0.85620 0.81079 0.75934 0.84838 0.86177 0.88788 0.83379 0.83798 0.83788 0.72829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 4.87 9.40 37.16 0.35 5.21 16 2 C 0.02 -0.93 3.94 -69.93 -0.28 -1.21 16 3 H 0.22 -9.14 8.14 -51.93 -0.42 -9.56 16 4 N -0.34 12.43 10.39 -53.16 -0.55 11.87 16 5 C 0.07 -2.59 6.68 -14.01 -0.09 -2.69 16 6 C -0.06 1.91 3.08 36.00 0.11 2.03 16 7 O -0.49 14.69 12.75 -35.23 -0.45 14.24 16 8 Si 0.89 -29.24 26.70 -169.99 -4.54 -33.78 16 9 H -0.21 7.55 7.11 56.52 0.40 7.95 16 10 H -0.18 5.07 7.11 56.52 0.40 5.47 16 11 H -0.22 7.30 7.11 56.52 0.40 7.70 16 12 S 0.51 -21.77 20.52 -107.50 -2.21 -23.98 16 13 C -0.01 0.55 6.26 -30.53 -0.19 0.36 16 14 C 0.13 -5.85 7.08 -80.98 -0.57 -6.42 16 15 N -0.26 10.95 10.77 -52.02 -0.56 10.39 16 16 C 0.16 -7.09 4.56 -126.94 -0.58 -7.67 16 17 H 0.23 -10.21 8.14 -51.93 -0.42 -10.63 16 18 C -0.15 6.25 9.66 37.16 0.36 6.61 16 19 N -0.37 17.19 2.96 -175.69 -0.52 16.67 16 20 C 0.02 -0.94 11.06 59.85 0.66 -0.28 16 21 C 0.25 -12.20 11.37 -14.89 -0.17 -12.37 16 22 H 0.09 -3.34 8.14 -51.93 -0.42 -3.76 16 23 H 0.10 -4.11 7.34 -51.93 -0.38 -4.49 16 24 H 0.13 -4.47 8.14 -51.93 -0.42 -4.89 16 25 H 0.17 -6.04 7.96 -51.93 -0.41 -6.45 16 26 H 0.39 -13.04 8.70 45.56 0.40 -12.64 16 27 H 0.13 -5.30 8.14 -51.93 -0.42 -5.72 16 28 H 0.12 -5.02 7.37 -51.93 -0.38 -5.40 16 29 H 0.09 -3.86 8.14 -51.93 -0.42 -4.28 16 30 H 0.15 -6.75 8.14 -51.93 -0.42 -7.18 16 31 H 0.14 -6.72 8.13 -51.93 -0.42 -7.14 16 32 H 0.14 -6.51 7.26 -51.93 -0.38 -6.88 16 33 H 0.26 -13.42 8.06 -52.49 -0.42 -13.84 16 LS Contribution 290.32 15.07 4.37 4.37 Total: 2.00 -89.79 290.32 -8.61 -98.40 By element: Atomic # 1 Polarization: -78.01 SS G_CDS: -3.76 Total: -81.76 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.40 Total: -16.43 kcal Atomic # 7 Polarization: 40.57 SS G_CDS: -1.63 Total: 38.94 kcal Atomic # 8 Polarization: 14.69 SS G_CDS: -0.45 Total: 14.24 kcal Atomic # 14 Polarization: -29.24 SS G_CDS: -4.54 Total: -33.78 kcal Atomic # 16 Polarization: -21.77 SS G_CDS: -2.21 Total: -23.98 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -89.79 -8.61 -98.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 504.150 kcal (2) G-P(sol) polarization free energy of solvation -89.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 414.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 405.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds