Wall clock time and date at job start Tue Mar 17 2020 17:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.04526 * 2 1 4 4 N 1.44751 * 109.06991 * 118.89906 * 2 1 3 5 5 C 1.27678 * 117.40534 * 120.55781 * 4 2 1 6 6 C 1.50698 * 125.22715 * 180.02562 * 5 4 2 7 7 O 1.42902 * 109.47078 * 30.02061 * 6 5 4 8 8 Si 1.86297 * 109.47395 * 150.02394 * 6 5 4 9 9 H 1.48503 * 109.47217 * 59.99532 * 8 6 5 10 10 H 1.48494 * 109.47153 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46752 * 299.99910 * 8 6 5 12 12 S 1.76529 * 109.54888 * 0.02562 * 5 4 2 13 13 C 1.50889 * 109.07137 * 240.98364 * 2 1 3 14 14 C 1.47300 * 127.59215 * 59.44374 * 13 2 1 15 15 N 1.30213 * 125.27066 * 0.02562 * 14 13 2 16 16 C 1.46851 * 107.08587 * 180.02562 * 15 14 13 17 17 H 1.08993 * 110.11556 * 240.76252 * 16 15 14 18 18 C 1.53000 * 110.11030 * 119.17662 * 16 15 14 19 19 N 1.46793 * 106.15668 * 0.02562 * 16 15 14 20 20 C 1.46508 * 126.23879 * 180.02562 * 19 16 15 21 21 C 1.28902 * 107.51663 * 359.70015 * 19 16 15 22 22 H 1.09002 * 109.47153 * 179.01413 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.01604 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.01585 * 1 2 3 25 25 H 1.09000 * 109.46714 * 270.02177 * 6 5 4 26 26 H 0.96703 * 113.99643 * 60.00245 * 7 6 5 27 27 H 1.08993 * 109.47355 * 61.45579 * 18 16 15 28 28 H 1.09003 * 109.46668 * 181.45502 * 18 16 15 29 29 H 1.08999 * 109.47104 * 301.45059 * 18 16 15 30 30 H 1.08998 * 109.47088 * 89.99989 * 20 19 16 31 31 H 1.09003 * 109.46689 * 209.99635 * 20 19 16 32 32 H 1.08997 * 109.46984 * 329.99608 * 20 19 16 33 33 H 1.08001 * 125.11275 * 180.24779 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8857 1.0304 0.0000 4 7 2.0029 -0.6611 1.1977 5 6 2.7396 -1.6931 1.0474 6 6 3.3254 -2.5135 2.1676 7 8 2.4583 -2.4586 3.3021 8 14 3.5096 -4.2820 1.6116 9 1 4.4107 -4.3390 0.4325 10 1 4.0863 -5.0904 2.7156 11 1 2.1778 -4.8263 1.2435 12 16 2.9664 -2.0113 -0.6741 13 6 2.0230 -0.6917 -1.2471 14 6 1.7558 -0.3188 -2.6468 15 7 1.0330 0.6941 -3.0302 16 6 1.0322 0.6924 -4.4987 17 1 1.4689 1.6175 -4.8749 18 6 -0.3961 0.5337 -5.0238 19 7 1.8501 -0.4564 -4.9062 20 6 2.1417 -0.8674 -6.2819 21 6 2.2706 -1.0335 -3.8331 22 1 -0.3633 -1.0275 -0.0177 23 1 -0.3633 0.5291 -0.8811 24 1 -0.3634 0.4985 0.8987 25 1 4.3029 -2.1139 2.4377 26 1 1.5689 -2.7990 3.1341 27 1 -1.0021 1.3752 -4.6884 28 1 -0.3817 0.5078 -6.1135 29 1 -0.8218 -0.3950 -4.6439 30 1 3.0510 -0.3732 -6.6238 31 1 2.2805 -1.9480 -6.3165 32 1 1.3105 -0.5870 -6.9288 33 1 2.9016 -1.9096 -3.8052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725674252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:31:43 Heat of formation + Delta-G solvation = 326.361574 kcal Electronic energy + Delta-G solvation = -16869.803501 eV Core-core repulsion = 14150.627666 eV Total energy + Delta-G solvation = -2719.175835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.35400 -41.31852 -38.39158 -37.30043 -34.84216 -33.50789 -30.42824 -30.02294 -29.23968 -26.98102 -24.72485 -23.91960 -23.36512 -21.76290 -20.33653 -19.22032 -18.64039 -18.18463 -17.88228 -17.43032 -16.96622 -16.65577 -16.46973 -15.88628 -15.65861 -15.26648 -14.81757 -14.48281 -14.33931 -13.89005 -13.70122 -13.62439 -13.42669 -13.31539 -13.16660 -13.02639 -12.77568 -12.71283 -12.47773 -12.15983 -11.83668 -11.69570 -10.88510 -3.57917 -1.95976 -1.92029 -1.05889 -0.65100 -0.08609 -0.08179 0.59142 0.66611 0.99139 1.15724 1.35724 1.59546 1.72493 2.15567 2.38828 2.61663 2.77436 2.91572 3.01976 3.07965 3.24636 3.30208 3.36434 3.91171 4.03131 4.09860 4.18397 4.18861 4.20906 4.26142 4.30696 4.53354 4.65260 4.85692 4.90501 5.04066 6.39154 Molecular weight = 255.09amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.006652 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.379969 B = 4208.444579 C = 4831.942904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.019 3.981 3 H 0.226 0.774 4 N -0.392 5.392 5 C 0.045 3.955 6 C -0.056 4.056 7 O -0.536 6.536 8 Si 0.895 3.105 9 H -0.160 1.160 10 H -0.264 1.264 11 H -0.218 1.218 12 S 0.620 5.380 13 C 0.007 3.993 14 C 0.139 3.861 15 N -0.295 5.295 16 C 0.166 3.834 17 H 0.230 0.770 18 C -0.153 4.153 19 N -0.373 5.373 20 C 0.020 3.980 21 C 0.281 3.719 22 H 0.091 0.909 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.172 0.828 26 H 0.398 0.602 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.146 0.854 31 H 0.160 0.840 32 H 0.132 0.868 33 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 0.363 -19.425 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.241 0.759 4 N -0.099 5.099 5 C -0.253 4.253 6 C -0.169 4.169 7 O -0.343 6.343 8 Si 0.711 3.289 9 H -0.082 1.082 10 H -0.188 1.188 11 H -0.140 1.140 12 S 0.868 5.132 13 C -0.124 4.124 14 C -0.044 4.044 15 N -0.014 5.014 16 C -0.027 4.027 17 H 0.246 0.754 18 C -0.212 4.212 19 N -0.035 5.035 20 C -0.115 4.115 21 C 0.090 3.910 22 H 0.109 0.891 23 H 0.131 0.869 24 H 0.110 0.890 25 H 0.189 0.811 26 H 0.249 0.751 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.109 0.891 30 H 0.164 0.836 31 H 0.178 0.822 32 H 0.150 0.850 33 H 0.324 0.676 Dipole moment (debyes) X Y Z Total from point charges 1.704 0.440 -19.493 19.572 hybrid contribution -0.883 1.065 0.454 1.456 sum 0.821 1.505 -19.039 19.116 Atomic orbital electron populations 1.22084 0.83053 1.06405 1.07525 1.23553 1.02463 1.04698 0.78984 0.75864 1.71355 1.06249 1.04785 1.27552 1.30447 0.98514 0.96321 1.00040 1.25522 0.98277 1.08133 0.84920 1.86745 1.28127 1.86832 1.32591 0.86488 0.85315 0.72395 0.84668 1.08165 1.18801 1.13954 1.85301 1.21586 1.07061 0.99289 1.30170 0.87958 0.96730 0.97553 1.20983 0.98984 0.95029 0.89387 1.75787 1.03218 1.11402 1.11030 1.25772 0.98072 0.93290 0.85594 0.75442 1.22323 0.86910 1.06896 1.05042 1.48687 1.24798 1.17890 1.12122 1.23995 1.08096 1.07745 0.71699 1.27667 0.85710 0.94643 0.83003 0.89059 0.86856 0.88988 0.81097 0.75092 0.87470 0.86230 0.89100 0.83636 0.82180 0.84962 0.67643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 9.43 9.40 71.98 0.68 10.11 16 2 C 0.02 -1.45 3.94 44.63 0.18 -1.27 16 3 H 0.23 -17.63 8.14 -2.39 -0.02 -17.65 16 4 N -0.39 26.75 10.39 -321.65 -3.34 23.40 16 5 C 0.04 -3.22 6.68 88.71 0.59 -2.63 16 6 C -0.06 3.59 3.08 71.24 0.22 3.81 16 7 O -0.54 29.01 12.75 -148.98 -1.90 27.11 16 8 Si 0.90 -56.03 26.70 68.60 1.83 -54.20 16 9 H -0.16 11.38 7.11 99.48 0.71 12.09 16 10 H -0.26 12.91 7.11 99.48 0.71 13.61 16 11 H -0.22 13.82 7.11 99.48 0.71 14.52 16 12 S 0.62 -53.34 20.52 -56.49 -1.16 -54.49 16 13 C 0.01 -0.64 6.26 28.13 0.18 -0.46 16 14 C 0.14 -12.44 7.08 44.29 0.31 -12.13 16 15 N -0.30 24.48 10.77 -318.50 -3.43 21.06 16 16 C 0.17 -14.19 4.56 129.33 0.59 -13.60 16 17 H 0.23 -20.01 8.14 -2.39 -0.02 -20.03 16 18 C -0.15 12.20 9.66 71.98 0.70 12.89 16 19 N -0.37 34.31 2.96 -709.77 -2.10 32.22 16 20 C 0.02 -1.79 11.06 127.77 1.41 -0.38 16 21 C 0.28 -27.21 11.37 87.64 1.00 -26.21 16 22 H 0.09 -6.68 8.14 -2.39 -0.02 -6.70 16 23 H 0.11 -8.41 7.34 -2.39 -0.02 -8.42 16 24 H 0.09 -5.96 8.14 -2.38 -0.02 -5.98 16 25 H 0.17 -11.31 7.96 -2.39 -0.02 -11.33 16 26 H 0.40 -24.16 8.70 -74.06 -0.64 -24.81 16 27 H 0.11 -7.94 8.14 -2.39 -0.02 -7.96 16 28 H 0.12 -9.54 7.37 -2.39 -0.02 -9.56 16 29 H 0.09 -7.16 8.14 -2.39 -0.02 -7.18 16 30 H 0.15 -13.14 8.14 -2.39 -0.02 -13.16 16 31 H 0.16 -15.04 8.13 -2.39 -0.02 -15.06 16 32 H 0.13 -11.66 7.26 -2.39 -0.02 -11.67 16 33 H 0.31 -33.53 8.06 -2.91 -0.02 -33.55 16 Total: 2.00 -184.60 290.32 -3.02 -187.62 By element: Atomic # 1 Polarization: -154.07 SS G_CDS: 1.23 Total: -152.85 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 5.85 Total: -29.86 kcal Atomic # 7 Polarization: 85.54 SS G_CDS: -8.87 Total: 76.68 kcal Atomic # 8 Polarization: 29.01 SS G_CDS: -1.90 Total: 27.11 kcal Atomic # 14 Polarization: -56.03 SS G_CDS: 1.83 Total: -54.20 kcal Atomic # 16 Polarization: -53.34 SS G_CDS: -1.16 Total: -54.49 kcal Total: -184.60 -3.02 -187.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 513.981 kcal (2) G-P(sol) polarization free energy of solvation -184.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 329.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -187.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 326.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds