Wall clock time and date at job start Tue Mar 17 2020 17:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47033 * 2 1 4 4 N 1.46493 * 109.47107 * 120.00680 * 2 1 3 5 5 N 1.28680 * 126.03380 * 305.82053 * 4 2 1 6 6 N 1.28444 * 111.04143 * 180.29072 * 5 4 2 7 7 C 1.33249 * 109.60137 * 359.70900 * 6 5 4 8 8 C 1.37325 * 126.03537 * 125.62605 * 4 2 1 9 9 C 1.41628 * 127.33875 * 359.97438 * 8 4 2 10 10 S 1.71775 * 127.14353 * 354.02376 * 9 8 4 11 11 C 1.76315 * 97.51041 * 180.02562 * 10 9 8 12 12 C 1.50704 * 125.13545 * 179.88530 * 11 10 9 13 13 O 1.42900 * 109.47090 * 59.69724 * 12 11 10 14 14 Si 1.86295 * 109.47338 * 299.69243 * 12 11 10 15 15 H 1.48494 * 109.47340 * 180.02562 * 14 12 11 16 16 H 1.48503 * 109.46877 * 59.99773 * 14 12 11 17 17 H 1.48503 * 109.47058 * 300.00292 * 14 12 11 18 18 C 1.31112 * 109.72718 * 359.61657 * 11 10 9 19 19 C 1.49126 * 115.73904 * 0.26735 * 18 11 10 20 20 H 1.08999 * 109.47112 * 299.99167 * 1 2 3 21 21 H 1.08995 * 109.47154 * 59.99695 * 1 2 3 22 22 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46690 * 240.00504 * 2 1 3 24 24 H 1.09001 * 109.47396 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47509 * 300.00504 * 3 2 1 26 26 H 1.09003 * 109.47154 * 60.00193 * 3 2 1 27 27 H 1.08008 * 126.94181 * 179.97438 * 7 6 5 28 28 H 1.09002 * 109.46782 * 179.69162 * 12 11 10 29 29 H 0.96699 * 113.99583 * 299.99692 * 13 12 11 30 30 H 1.07998 * 122.12805 * 180.28786 * 18 11 10 31 31 H 1.09003 * 109.12089 * 120.48206 * 19 18 11 32 32 H 1.09000 * 109.12439 * 239.51169 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1960 5 7 1.6965 -0.4185 2.4118 6 7 2.2980 -1.2005 3.2343 7 6 3.0651 -2.0553 2.5586 8 6 2.8975 -1.7455 1.2175 9 6 3.5073 -2.3782 0.1068 10 16 3.1954 -2.0813 -1.5561 11 6 4.3376 -3.2505 -2.2171 12 6 4.5668 -3.5048 -3.6848 13 8 5.0020 -2.2984 -4.3150 14 14 2.9782 -4.0782 -4.4712 15 1 3.2042 -4.3293 -5.9172 16 1 1.9383 -3.0308 -4.3067 17 1 2.5260 -5.3319 -3.8162 18 6 4.9616 -3.8612 -1.2391 19 6 4.5702 -3.4453 0.1385 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.6912 -2.8321 2.9721 28 1 5.3301 -4.2735 -3.8054 29 1 4.3705 -1.5692 -4.2469 30 1 5.7116 -4.6171 -1.4196 31 1 4.1896 -4.3123 0.6786 32 1 5.4475 -3.0601 0.6581 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725674389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:24:44 Heat of formation + Delta-G solvation = 211.969961 kcal Electronic energy + Delta-G solvation = -16915.564308 eV Core-core repulsion = 14205.083820 eV Total energy + Delta-G solvation = -2710.480488 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.01670 -39.58637 -38.10445 -37.87686 -34.77315 -33.14662 -31.19866 -28.59428 -27.82270 -25.87782 -25.42576 -24.00978 -22.36617 -21.34514 -19.73743 -18.60535 -18.15216 -17.94465 -17.24105 -16.96432 -16.28515 -16.20749 -15.75176 -15.55365 -14.99713 -14.66974 -14.50196 -14.24580 -13.61918 -13.53117 -13.44084 -13.40734 -13.05713 -12.84731 -12.78626 -12.56883 -12.39310 -12.29578 -11.96028 -11.75197 -11.64957 -10.77083 -10.04402 -2.80572 -1.28291 -0.22504 -0.05168 0.06207 0.41555 0.94160 0.97133 1.23051 1.38997 1.82893 1.92743 2.41015 2.71108 2.87953 3.04496 3.29183 3.30764 3.34845 3.44797 3.67575 3.85144 3.93950 4.01745 4.23743 4.36317 4.40726 4.46400 4.47564 4.52114 4.56090 4.69977 4.83706 4.99790 5.02105 6.42172 6.72075 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.008134 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.569995 B = 3441.667073 C = 4002.658050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.129 3.871 3 C -0.176 4.176 4 N -0.253 5.253 5 N -0.020 5.020 6 N -0.315 5.315 7 C 0.117 3.883 8 C -0.056 4.056 9 C 0.060 3.940 10 S 0.400 5.600 11 C -0.288 4.288 12 C -0.027 4.027 13 O -0.545 6.545 14 Si 0.914 3.086 15 H -0.275 1.275 16 H -0.229 1.229 17 H -0.244 1.244 18 C -0.022 4.022 19 C -0.135 4.135 20 H 0.070 0.930 21 H 0.117 0.883 22 H 0.074 0.926 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.268 0.732 28 H 0.160 0.840 29 H 0.389 0.611 30 H 0.217 0.783 31 H 0.231 0.769 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -4.092 -0.256 5.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 C -0.233 4.233 4 N -0.057 5.057 5 N 0.000 5.000 6 N -0.170 5.170 7 C -0.056 4.056 8 C -0.184 4.184 9 C -0.068 4.068 10 S 0.661 5.339 11 C -0.401 4.401 12 C -0.141 4.141 13 O -0.351 6.351 14 Si 0.737 3.263 15 H -0.200 1.200 16 H -0.151 1.151 17 H -0.168 1.168 18 C -0.043 4.043 19 C -0.171 4.171 20 H 0.089 0.911 21 H 0.135 0.865 22 H 0.093 0.907 23 H 0.140 0.860 24 H 0.096 0.904 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.284 0.716 28 H 0.177 0.823 29 H 0.238 0.762 30 H 0.233 0.767 31 H 0.246 0.754 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.189 -2.955 -0.653 3.735 hybrid contribution 0.986 -0.852 0.048 1.304 sum 3.175 -3.807 -0.605 4.994 Atomic orbital electron populations 1.22356 0.89856 1.04808 1.06311 1.22546 0.98439 0.95533 0.80482 1.22390 1.02942 0.91693 1.06306 1.49153 1.26801 1.20787 1.08929 1.78492 1.16212 1.18411 0.86897 1.75311 1.10198 1.05762 1.25716 1.25940 0.95276 0.97621 0.86735 1.18893 1.05163 0.98826 0.95545 1.26909 0.90209 0.91209 0.98470 1.84380 1.29151 1.29420 0.90992 1.25492 1.05675 1.06261 1.02655 1.24345 1.10909 0.92749 0.86095 1.86704 1.48542 1.22079 1.77811 0.86162 0.76127 0.82650 0.81379 1.19982 1.15136 1.16756 1.23899 0.94840 0.95717 0.89805 1.21441 0.97714 0.97843 1.00121 0.91117 0.86450 0.90737 0.86016 0.90381 0.86333 0.91360 0.71648 0.82251 0.76166 0.76677 0.75360 0.75545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 6.40 9.31 71.98 0.67 7.07 16 2 C 0.13 -5.10 3.60 44.99 0.16 -4.94 16 3 C -0.18 6.57 9.47 71.98 0.68 7.26 16 4 N -0.25 9.18 3.13 -318.78 -1.00 8.18 16 5 N -0.02 0.55 12.79 37.02 0.47 1.02 16 6 N -0.31 8.72 12.33 -56.49 -0.70 8.02 16 7 C 0.12 -4.79 11.97 84.58 1.01 -3.77 16 8 C -0.06 2.44 6.84 39.22 0.27 2.71 16 9 C 0.06 -3.12 6.65 26.51 0.18 -2.94 16 10 S 0.40 -19.85 18.44 -56.49 -1.04 -20.89 16 11 C -0.29 13.94 4.79 25.54 0.12 14.07 16 12 C -0.03 1.11 2.98 71.24 0.21 1.32 16 13 O -0.54 19.80 12.88 -148.98 -1.92 17.88 16 14 Si 0.91 -31.71 27.79 68.60 1.91 -29.80 16 15 H -0.28 6.90 7.11 99.48 0.71 7.60 16 16 H -0.23 8.37 7.11 99.48 0.71 9.08 16 17 H -0.24 8.09 7.11 99.48 0.71 8.79 16 18 C -0.02 1.22 10.27 25.05 0.26 1.48 16 19 C -0.14 8.03 6.09 28.60 0.17 8.20 16 20 H 0.07 -2.19 8.11 -2.39 -0.02 -2.21 16 21 H 0.12 -4.61 8.14 -2.39 -0.02 -4.63 16 22 H 0.07 -2.70 8.14 -2.39 -0.02 -2.72 16 23 H 0.12 -5.65 4.23 -14.86 -0.06 -5.71 16 24 H 0.08 -2.99 8.14 -2.39 -0.02 -3.01 16 25 H 0.12 -4.76 8.14 -2.39 -0.02 -4.78 16 26 H 0.07 -2.17 8.14 -2.39 -0.02 -2.18 16 27 H 0.27 -13.92 8.06 -2.91 -0.02 -13.94 16 28 H 0.16 -7.01 7.90 -2.39 -0.02 -7.03 16 29 H 0.39 -16.87 8.61 -74.06 -0.64 -17.51 16 30 H 0.22 -12.51 8.06 -2.91 -0.02 -12.54 16 31 H 0.23 -14.98 8.14 -2.39 -0.02 -14.99 16 32 H 0.23 -14.65 8.14 -2.39 -0.02 -14.67 16 Total: 1.00 -68.24 282.62 2.66 -65.58 By element: Atomic # 1 Polarization: -81.63 SS G_CDS: 1.20 Total: -80.43 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: 3.74 Total: 30.44 kcal Atomic # 7 Polarization: 18.44 SS G_CDS: -1.22 Total: 17.22 kcal Atomic # 8 Polarization: 19.80 SS G_CDS: -1.92 Total: 17.88 kcal Atomic # 14 Polarization: -31.71 SS G_CDS: 1.91 Total: -29.80 kcal Atomic # 16 Polarization: -19.85 SS G_CDS: -1.04 Total: -20.89 kcal Total: -68.24 2.66 -65.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 277.548 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 211.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds