Wall clock time and date at job start Tue Mar 17 2020 17:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46834 * 2 1 4 4 N 1.46493 * 109.47154 * 119.99998 * 2 1 3 5 5 C 1.36277 * 126.97245 * 120.00163 * 4 2 1 6 6 C 1.46283 * 126.21502 * 0.02562 * 5 4 2 7 7 S 1.71773 * 127.13230 * 0.02562 * 6 5 4 8 8 C 1.76329 * 97.51495 * 180.02562 * 7 6 5 9 9 C 1.50701 * 125.14113 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.46928 * 300.02690 * 9 8 7 11 11 Si 1.86302 * 109.47166 * 60.02515 * 9 8 7 12 12 H 1.48504 * 109.47050 * 59.99793 * 11 9 8 13 13 H 1.48488 * 109.47506 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47097 * 300.00100 * 11 9 8 15 15 C 1.31178 * 109.71649 * 0.02562 * 8 7 6 16 16 C 1.49125 * 115.72834 * 359.97438 * 15 8 7 17 17 N 1.32265 * 107.57402 * 180.26112 * 5 4 2 18 18 C 1.32503 * 109.83675 * 359.56024 * 17 5 4 19 19 N 1.31106 * 109.48079 * 0.45157 * 18 17 5 20 20 H 1.09001 * 109.47429 * 299.99730 * 1 2 3 21 21 H 1.08999 * 109.47513 * 60.00119 * 1 2 3 22 22 H 1.09005 * 109.47220 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46970 * 239.99996 * 2 1 3 24 24 H 1.08999 * 109.46899 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46663 * 299.99637 * 3 2 1 26 26 H 1.08996 * 109.47573 * 59.99817 * 3 2 1 27 27 H 1.08993 * 109.46967 * 180.02562 * 9 8 7 28 28 H 0.96694 * 114.00043 * 60.00489 * 10 9 8 29 29 H 1.08004 * 122.13367 * 180.02562 * 15 8 7 30 30 H 1.08997 * 109.12501 * 120.49192 * 16 15 8 31 31 H 1.09002 * 109.11989 * 239.51433 * 16 15 8 32 32 H 1.07997 * 125.25916 * 180.15522 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8048 -1.8028 1.2367 6 6 3.3243 -2.5365 0.0828 7 16 3.0696 -2.1740 -1.5768 8 6 4.0098 -3.5050 -2.2505 9 6 4.2009 -3.7751 -3.7207 10 8 2.9291 -3.9960 -4.3336 11 14 5.0286 -2.3092 -4.5189 12 1 6.3503 -2.0795 -3.8819 13 1 5.2175 -2.5755 -5.9675 14 1 4.1784 -1.1044 -4.3433 15 6 4.5168 -4.2252 -1.2783 16 6 4.1927 -3.7674 0.1034 17 7 3.0088 -2.1013 2.5090 18 6 2.3924 -1.2194 3.2823 19 7 1.7709 -0.3406 2.5338 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6765 1.9563 -0.8901 26 1 1.6766 1.9565 0.8899 27 1 4.8249 -4.6594 -3.8495 28 1 2.3206 -3.2484 -4.2577 29 1 5.1305 -5.0937 -1.4667 30 1 3.6688 -4.5649 0.6302 31 1 5.1193 -3.5419 0.6314 32 1 2.3970 -1.2265 4.3622 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725674456.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:24:47 Heat of formation + Delta-G solvation = 234.365964 kcal Electronic energy + Delta-G solvation = -16846.816976 eV Core-core repulsion = 14137.307652 eV Total energy + Delta-G solvation = -2709.509324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.31320 -41.54724 -39.60412 -39.23559 -36.03647 -34.16904 -33.21685 -30.03004 -29.77692 -27.41783 -26.75649 -25.38613 -23.79712 -23.10418 -21.53649 -20.25813 -19.66439 -19.29331 -18.95736 -18.35116 -18.12768 -17.61891 -17.51599 -17.21747 -16.84413 -16.23910 -16.21051 -16.10922 -15.61010 -15.33528 -14.98238 -14.93761 -14.88678 -14.36445 -14.26367 -13.90245 -13.85573 -13.55819 -13.48943 -13.24741 -12.89273 -12.53000 -12.09667 -4.94538 -3.42253 -2.36233 -2.11749 -1.56412 -1.32044 -0.69630 -0.25113 -0.15430 -0.13571 -0.03643 0.14221 0.45771 0.83919 1.10539 1.45375 1.61497 1.62444 1.70820 1.84124 1.87346 1.87524 2.01993 2.28213 2.38092 2.70437 2.76380 2.92188 2.96378 3.01326 3.03449 3.33795 3.42281 3.54731 3.57878 4.61097 4.73321 Molecular weight = 254.08amu Principal moments of inertia in cm(-1) A = 0.026542 B = 0.008090 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.692800 B = 3460.208739 C = 4042.217916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 C -0.171 4.171 4 N -0.328 5.328 5 C 0.237 3.763 6 C 0.039 3.961 7 S 0.496 5.504 8 C -0.276 4.276 9 C -0.049 4.049 10 O -0.517 6.517 11 Si 0.910 3.090 12 H -0.232 1.232 13 H -0.213 1.213 14 H -0.235 1.235 15 C -0.038 4.038 16 C -0.138 4.138 17 N -0.447 5.447 18 C 0.219 3.781 19 N -0.224 5.224 20 H 0.090 0.910 21 H 0.100 0.900 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.377 0.623 29 H 0.202 0.798 30 H 0.205 0.795 31 H 0.203 0.797 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -1.445 -0.515 2.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.044 3.956 3 C -0.228 4.228 4 N -0.127 5.127 5 C -0.030 4.030 6 C -0.090 4.090 7 S 0.747 5.253 8 C -0.390 4.390 9 C -0.161 4.161 10 O -0.321 6.321 11 Si 0.726 3.274 12 H -0.154 1.154 13 H -0.134 1.134 14 H -0.158 1.158 15 C -0.058 4.058 16 C -0.175 4.175 17 N -0.176 5.176 18 C -0.082 4.082 19 N -0.055 5.055 20 H 0.109 0.891 21 H 0.119 0.881 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.170 0.830 28 H 0.224 0.776 29 H 0.219 0.781 30 H 0.221 0.779 31 H 0.219 0.781 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.342 -0.048 -1.357 1.909 hybrid contribution 0.373 -1.087 1.035 1.547 sum 1.715 -1.135 -0.321 2.082 Atomic orbital electron populations 1.22318 0.89532 1.04535 1.06414 1.22082 0.98469 0.95326 0.79716 1.22324 1.02412 0.91681 1.06424 1.51743 1.34039 1.19028 1.07936 1.20379 0.99698 0.91096 0.91791 1.28016 0.87306 0.94312 0.99324 1.84405 1.32686 1.19070 0.89107 1.26209 1.07305 1.01161 1.04283 1.24890 0.92752 1.14211 0.84291 1.86773 1.23798 1.43986 1.77588 0.86194 0.81643 0.74281 0.85324 1.15416 1.13393 1.15850 1.23695 0.93836 0.98605 0.89641 1.21146 1.02180 0.93895 1.00233 1.70764 1.22186 1.27037 0.97573 1.26599 0.91916 0.87239 1.02470 1.78612 1.20127 1.21612 0.85138 0.89118 0.88100 0.91120 0.90020 0.91166 0.88120 0.89085 0.82953 0.77564 0.78077 0.77944 0.78071 0.73639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 3.26 9.48 37.16 0.35 3.61 16 2 C 0.15 -2.92 3.69 -67.93 -0.25 -3.17 16 3 C -0.17 3.26 9.48 37.16 0.35 3.61 16 4 N -0.33 5.95 3.34 -52.57 -0.18 5.78 16 5 C 0.24 -4.64 7.89 -154.83 -1.22 -5.86 16 6 C 0.04 -0.93 6.86 -31.10 -0.21 -1.14 16 7 S 0.50 -12.29 18.45 -107.50 -1.98 -14.28 16 8 C -0.28 6.64 4.79 -36.07 -0.17 6.47 16 9 C -0.05 1.07 2.99 36.01 0.11 1.17 16 10 O -0.52 9.96 12.88 -35.23 -0.45 9.50 16 11 Si 0.91 -17.46 27.78 -169.99 -4.72 -22.18 16 12 H -0.23 4.22 7.11 56.52 0.40 4.62 16 13 H -0.21 3.34 7.11 56.52 0.40 3.75 16 14 H -0.24 4.75 7.11 56.52 0.40 5.15 16 15 C -0.04 0.97 10.27 -36.83 -0.38 0.59 16 16 C -0.14 3.60 6.27 -29.81 -0.19 3.41 16 17 N -0.45 7.72 11.22 -12.69 -0.14 7.58 16 18 C 0.22 -3.64 12.99 -92.13 -1.20 -4.84 16 19 N -0.22 3.48 12.61 29.22 0.37 3.85 16 20 H 0.09 -1.54 8.14 -51.93 -0.42 -1.96 16 21 H 0.10 -2.04 8.14 -51.93 -0.42 -2.47 16 22 H 0.07 -1.35 8.14 -51.93 -0.42 -1.77 16 23 H 0.08 -1.92 4.22 -32.55 -0.14 -2.06 16 24 H 0.07 -1.34 8.14 -51.93 -0.42 -1.76 16 25 H 0.10 -2.03 8.14 -51.93 -0.42 -2.46 16 26 H 0.09 -1.54 8.14 -51.93 -0.42 -1.97 16 27 H 0.15 -3.44 7.90 -51.93 -0.41 -3.85 16 28 H 0.38 -8.70 8.63 45.56 0.39 -8.30 16 29 H 0.20 -5.51 8.06 -52.48 -0.42 -5.93 16 30 H 0.20 -5.55 8.14 -51.93 -0.42 -5.97 16 31 H 0.20 -5.57 8.14 -51.93 -0.42 -5.99 16 32 H 0.25 -4.76 8.06 -52.49 -0.42 -5.18 16 LS Contribution 284.29 15.07 4.28 4.28 Total: 1.00 -28.95 284.29 -8.81 -37.76 By element: Atomic # 1 Polarization: -32.97 SS G_CDS: -3.18 Total: -36.15 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.81 Total: 3.85 kcal Atomic # 7 Polarization: 17.15 SS G_CDS: 0.05 Total: 17.20 kcal Atomic # 8 Polarization: 9.96 SS G_CDS: -0.45 Total: 9.50 kcal Atomic # 14 Polarization: -17.46 SS G_CDS: -4.72 Total: -22.18 kcal Atomic # 16 Polarization: -12.29 SS G_CDS: -1.98 Total: -14.28 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.95 -8.81 -37.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674456.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.129 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 243.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 234.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds