Wall clock time and date at job start Tue Mar 17 2020 17:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28079 * 125.23979 * 2 1 4 4 C 1.44751 * 117.30983 * 180.02562 * 3 2 1 5 5 H 1.09004 * 108.97107 * 239.49161 * 4 3 2 6 6 C 1.53005 * 109.05742 * 120.56861 * 4 3 2 7 7 C 1.50865 * 111.62013 * 0.02562 * 4 3 2 8 8 C 1.38987 * 127.57308 * 179.97438 * 7 4 3 9 9 N 1.32297 * 120.00337 * 185.53353 * 8 7 4 10 10 C 1.34978 * 124.51952 * 173.50388 * 9 8 7 11 11 C 1.33090 * 112.18469 * 179.97438 * 10 9 8 12 12 C 1.50704 * 126.47912 * 180.02562 * 11 10 9 13 13 O 1.42892 * 109.47215 * 119.97741 * 12 11 10 14 14 Si 1.86302 * 109.46902 * 359.97295 * 12 11 10 15 15 H 1.48496 * 109.47271 * 60.00188 * 14 12 11 16 16 H 1.48502 * 109.46770 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47281 * 299.99943 * 14 12 11 18 18 C 1.51374 * 107.04434 * 359.97438 * 11 10 9 19 19 N 1.40143 * 124.52080 * 353.47743 * 9 8 7 20 20 S 1.72032 * 104.86302 * 0.22155 * 7 4 3 21 21 H 1.08995 * 109.47527 * 90.00040 * 1 2 3 22 22 H 1.09006 * 109.47105 * 210.00116 * 1 2 3 23 23 H 1.09001 * 109.47218 * 329.99945 * 1 2 3 24 24 H 1.09003 * 109.46979 * 297.87482 * 6 4 3 25 25 H 1.09001 * 109.47007 * 57.87456 * 6 4 3 26 26 H 1.08999 * 109.46890 * 177.87878 * 6 4 3 27 27 H 1.08007 * 119.99450 * 5.52699 * 8 7 4 28 28 H 1.08006 * 123.90913 * 359.97438 * 10 9 8 29 29 H 1.09001 * 109.46773 * 239.97851 * 12 11 10 30 30 H 0.96705 * 113.99994 * 299.99641 * 13 12 11 31 31 H 1.08995 * 110.51145 * 241.36005 * 18 11 10 32 32 H 1.08994 * 110.51308 * 118.63866 * 18 11 10 33 33 H 0.97000 * 127.11568 * 359.75164 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2459 1.0461 0.0000 4 6 3.6796 0.8464 -0.0006 5 1 4.1031 1.3156 0.8875 6 6 4.2754 1.5062 -1.2458 7 6 4.0367 -0.6194 -0.0017 8 6 5.3075 -1.1821 -0.0030 9 7 5.4507 -2.4926 -0.1143 10 6 6.6359 -3.1237 -0.2514 11 6 6.4948 -4.4440 -0.3417 12 6 7.6014 -5.4545 -0.5014 13 8 7.5833 -6.3593 0.6045 14 14 9.2425 -4.5746 -0.5573 15 1 9.4417 -3.8178 0.7047 16 1 10.3329 -5.5704 -0.7152 17 1 9.2612 -3.6344 -1.7066 18 6 5.0127 -4.7389 -0.2525 19 7 4.3920 -3.4108 -0.1052 20 16 2.5256 -1.4417 -0.0083 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 3.8700 1.0300 -2.1386 25 1 4.0213 2.5662 -1.2522 26 1 5.3594 1.3924 -1.2338 27 1 6.1783 -0.5494 0.0868 28 1 7.5887 -2.6160 -0.2840 29 1 7.4552 -6.0100 -1.4278 30 1 7.7080 -5.9331 1.4635 31 1 4.7986 -5.3599 0.6172 32 1 4.6642 -5.2237 -1.1644 33 1 3.4465 -3.2132 -0.0155 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725674667.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:31:32 Heat of formation + Delta-G solvation = 439.152810 kcal Electronic energy + Delta-G solvation = -16841.633334 eV Core-core repulsion = 14127.348494 eV Total energy + Delta-G solvation = -2714.284840 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.16375 -44.33267 -42.18407 -40.51642 -38.51229 -37.88786 -34.94692 -33.42065 -31.31550 -31.09198 -28.46201 -27.73804 -26.77598 -25.28047 -24.76787 -22.45394 -22.43324 -22.00981 -21.41481 -21.02511 -20.64263 -20.03917 -19.57768 -19.45596 -19.30970 -18.82217 -18.32170 -18.12224 -17.84108 -17.42285 -17.27109 -16.90286 -16.44915 -16.20257 -16.10628 -15.83898 -15.73516 -15.38191 -15.00807 -14.91257 -14.75533 -13.94926 -13.77988 -7.58280 -5.29232 -5.08893 -5.00110 -4.13978 -3.66303 -3.52988 -3.01518 -2.28311 -1.77976 -1.62575 -1.44425 -1.30859 -1.24140 -1.19243 -1.04019 -0.87238 -0.56806 -0.31362 -0.16492 -0.09383 -0.02979 0.10492 0.19782 0.22198 0.36782 0.39676 0.48239 0.99447 1.16125 1.21607 1.23134 1.35977 1.50754 1.89981 2.05308 2.12019 3.34414 Molecular weight = 255.09amu Principal moments of inertia in cm(-1) A = 0.038489 B = 0.005917 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.309914 B = 4731.238072 C = 5332.650438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 N -0.381 5.381 4 C 0.045 3.955 5 H 0.213 0.787 6 C -0.134 4.134 7 C -0.065 4.065 8 C 0.109 3.891 9 N -0.012 5.012 10 C -0.050 4.050 11 C 0.052 3.948 12 C -0.095 4.095 13 O -0.502 6.502 14 Si 0.930 3.070 15 H -0.231 1.231 16 H -0.207 1.207 17 H -0.229 1.229 18 C 0.075 3.925 19 N -0.518 5.518 20 S 0.302 5.698 21 H 0.128 0.872 22 H 0.114 0.886 23 H 0.134 0.866 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.270 0.730 28 H 0.252 0.748 29 H 0.173 0.827 30 H 0.393 0.607 31 H 0.207 0.793 32 H 0.204 0.796 33 H 0.463 0.537 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 0.969 0.253 2.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 N -0.087 5.087 4 C -0.072 4.072 5 H 0.229 0.771 6 C -0.194 4.194 7 C -0.200 4.200 8 C -0.056 4.056 9 N 0.231 4.769 10 C -0.175 4.175 11 C 0.041 3.959 12 C -0.204 4.204 13 O -0.308 6.308 14 Si 0.745 3.255 15 H -0.153 1.153 16 H -0.128 1.128 17 H -0.152 1.152 18 C -0.046 4.046 19 N -0.274 5.274 20 S 0.557 5.443 21 H 0.146 0.854 22 H 0.132 0.868 23 H 0.152 0.848 24 H 0.101 0.899 25 H 0.141 0.859 26 H 0.125 0.875 27 H 0.285 0.715 28 H 0.268 0.732 29 H 0.189 0.811 30 H 0.242 0.758 31 H 0.223 0.777 32 H 0.220 0.780 33 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges -2.627 0.547 -0.228 2.693 hybrid contribution -0.452 0.914 0.601 1.184 sum -3.079 1.461 0.374 3.429 Atomic orbital electron populations 1.21349 0.78985 1.08354 1.08014 1.29975 1.03222 0.84768 0.96015 1.71453 1.02241 1.26423 1.08610 1.23282 0.89322 0.86649 1.07927 0.77127 1.22202 1.02412 1.04947 0.89807 1.28583 0.99014 1.07141 0.85244 1.22436 0.99523 0.79846 1.03798 1.43832 1.05016 1.05027 1.22980 1.23004 0.87730 0.95039 1.11678 1.25816 0.98102 0.95032 0.76914 1.25762 1.01887 0.95646 0.97136 1.86889 1.94741 1.32460 1.16668 0.85873 0.75256 0.81342 0.83074 1.15317 1.12849 1.15172 1.23424 0.89291 0.80722 1.11117 1.51178 1.03557 1.01639 1.71062 1.84001 0.93388 1.18479 1.48432 0.85414 0.86806 0.84836 0.89871 0.85946 0.87543 0.71486 0.73191 0.81050 0.75755 0.77687 0.77960 0.67253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 3.88 10.50 36.00 0.38 4.25 16 2 C 0.16 -5.98 7.65 -13.85 -0.11 -6.09 16 3 N -0.38 13.77 10.59 -52.96 -0.56 13.21 16 4 C 0.04 -1.81 3.91 -69.93 -0.27 -2.08 16 5 H 0.21 -8.97 8.14 -51.93 -0.42 -9.39 16 6 C -0.13 5.24 9.37 37.16 0.35 5.59 16 7 C -0.07 2.89 5.88 -33.95 -0.20 2.69 16 8 C 0.11 -5.09 10.41 -17.07 -0.18 -5.27 16 9 N -0.01 0.55 3.50 -13.48 -0.05 0.51 16 10 C -0.05 2.24 9.56 -17.96 -0.17 2.07 16 11 C 0.05 -2.28 5.78 -100.81 -0.58 -2.86 16 12 C -0.10 3.71 3.07 36.01 0.11 3.82 16 13 O -0.50 17.78 12.88 -35.23 -0.45 17.32 16 14 Si 0.93 -32.51 25.86 -169.99 -4.40 -36.90 16 15 H -0.23 8.14 7.11 56.52 0.40 8.54 16 16 H -0.21 5.97 7.11 56.52 0.40 6.37 16 17 H -0.23 8.01 7.11 56.52 0.40 8.41 16 18 C 0.08 -3.41 7.98 -4.40 -0.04 -3.44 16 19 N -0.52 23.65 7.14 -10.84 -0.08 23.57 16 20 S 0.30 -12.86 18.67 -107.50 -2.01 -14.87 16 21 H 0.13 -4.64 8.14 -51.93 -0.42 -5.06 16 22 H 0.11 -4.29 8.14 -51.93 -0.42 -4.71 16 23 H 0.13 -4.61 8.14 -51.93 -0.42 -5.03 16 24 H 0.08 -3.16 8.14 -51.93 -0.42 -3.59 16 25 H 0.12 -4.38 8.14 -51.93 -0.42 -4.80 16 26 H 0.11 -4.44 8.05 -51.93 -0.42 -4.85 16 27 H 0.27 -13.66 8.06 -52.48 -0.42 -14.08 16 28 H 0.25 -11.80 6.02 -52.48 -0.32 -12.11 16 29 H 0.17 -6.79 7.96 -51.93 -0.41 -7.20 16 30 H 0.39 -15.28 8.70 45.56 0.40 -14.89 16 31 H 0.21 -9.58 8.14 -51.93 -0.42 -10.00 16 32 H 0.20 -9.53 8.14 -51.93 -0.42 -9.95 16 33 H 0.46 -21.21 4.83 -155.09 -0.75 -21.96 16 LS Contribution 282.83 15.07 4.26 4.26 Total: 2.00 -90.44 282.83 -8.09 -98.53 By element: Atomic # 1 Polarization: -100.21 SS G_CDS: -4.10 Total: -104.31 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.71 Total: -1.32 kcal Atomic # 7 Polarization: 37.97 SS G_CDS: -0.69 Total: 37.29 kcal Atomic # 8 Polarization: 17.78 SS G_CDS: -0.45 Total: 17.32 kcal Atomic # 14 Polarization: -32.51 SS G_CDS: -4.40 Total: -36.90 kcal Atomic # 16 Polarization: -12.86 SS G_CDS: -2.01 Total: -14.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -90.44 -8.09 -98.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674667.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 537.685 kcal (2) G-P(sol) polarization free energy of solvation -90.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 447.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 439.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds