Wall clock time and date at job start Tue Mar 17 2020 17:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28079 * 125.23979 * 2 1 4 4 C 1.44751 * 117.30983 * 180.02562 * 3 2 1 5 5 H 1.09004 * 108.97107 * 239.49161 * 4 3 2 6 6 C 1.53005 * 109.05742 * 120.56861 * 4 3 2 7 7 C 1.50865 * 111.62013 * 0.02562 * 4 3 2 8 8 C 1.38987 * 127.57308 * 179.97438 * 7 4 3 9 9 N 1.32297 * 120.00337 * 185.53353 * 8 7 4 10 10 C 1.34978 * 124.51952 * 173.50388 * 9 8 7 11 11 C 1.33090 * 112.18469 * 179.97438 * 10 9 8 12 12 C 1.50704 * 126.47912 * 180.02562 * 11 10 9 13 13 O 1.42892 * 109.47215 * 119.97741 * 12 11 10 14 14 Si 1.86302 * 109.46902 * 359.97295 * 12 11 10 15 15 H 1.48496 * 109.47271 * 60.00188 * 14 12 11 16 16 H 1.48502 * 109.46770 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47281 * 299.99943 * 14 12 11 18 18 C 1.51374 * 107.04434 * 359.97438 * 11 10 9 19 19 N 1.40143 * 124.52080 * 353.47743 * 9 8 7 20 20 S 1.72032 * 104.86302 * 0.22155 * 7 4 3 21 21 H 1.08995 * 109.47527 * 90.00040 * 1 2 3 22 22 H 1.09006 * 109.47105 * 210.00116 * 1 2 3 23 23 H 1.09001 * 109.47218 * 329.99945 * 1 2 3 24 24 H 1.09003 * 109.46979 * 297.87482 * 6 4 3 25 25 H 1.09001 * 109.47007 * 57.87456 * 6 4 3 26 26 H 1.08999 * 109.46890 * 177.87878 * 6 4 3 27 27 H 1.08007 * 119.99450 * 5.52699 * 8 7 4 28 28 H 1.08006 * 123.90913 * 359.97438 * 10 9 8 29 29 H 1.09001 * 109.46773 * 239.97851 * 12 11 10 30 30 H 0.96705 * 113.99994 * 299.99641 * 13 12 11 31 31 H 1.08995 * 110.51145 * 241.36005 * 18 11 10 32 32 H 1.08994 * 110.51308 * 118.63866 * 18 11 10 33 33 H 0.97000 * 127.11568 * 359.75164 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2459 1.0461 0.0000 4 6 3.6796 0.8464 -0.0006 5 1 4.1031 1.3156 0.8875 6 6 4.2754 1.5062 -1.2458 7 6 4.0367 -0.6194 -0.0017 8 6 5.3075 -1.1821 -0.0030 9 7 5.4507 -2.4926 -0.1143 10 6 6.6359 -3.1237 -0.2514 11 6 6.4948 -4.4440 -0.3417 12 6 7.6014 -5.4545 -0.5014 13 8 7.5833 -6.3593 0.6045 14 14 9.2425 -4.5746 -0.5573 15 1 9.4417 -3.8178 0.7047 16 1 10.3329 -5.5704 -0.7152 17 1 9.2612 -3.6344 -1.7066 18 6 5.0127 -4.7389 -0.2525 19 7 4.3920 -3.4108 -0.1052 20 16 2.5256 -1.4417 -0.0083 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 3.8700 1.0300 -2.1386 25 1 4.0213 2.5662 -1.2522 26 1 5.3594 1.3924 -1.2338 27 1 6.1783 -0.5494 0.0868 28 1 7.5887 -2.6160 -0.2840 29 1 7.4552 -6.0100 -1.4278 30 1 7.7080 -5.9331 1.4635 31 1 4.7986 -5.3599 0.6172 32 1 4.6642 -5.2237 -1.1644 33 1 3.4465 -3.2132 -0.0155 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725674667.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:31:31 Heat of formation + Delta-G solvation = 359.606367 kcal Electronic energy + Delta-G solvation = -16845.082726 eV Core-core repulsion = 14127.348494 eV Total energy + Delta-G solvation = -2717.734232 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.61597 -41.07113 -38.95688 -37.24903 -35.09548 -34.55133 -31.60620 -30.36287 -28.06459 -27.54855 -24.98553 -24.48804 -23.36070 -21.79989 -21.45892 -19.09623 -18.88165 -18.64552 -18.12684 -17.71217 -17.20321 -16.62579 -16.40940 -16.25348 -16.03334 -15.30346 -15.14738 -14.89150 -14.64186 -14.36624 -14.07528 -13.75182 -13.34158 -13.02218 -12.85744 -12.74336 -12.36285 -12.28936 -12.18560 -12.05105 -11.76745 -10.88292 -10.34292 -4.08256 -1.85209 -1.54890 -1.41291 -0.81362 -0.40134 -0.08282 0.48184 0.72542 1.33848 1.48302 1.61780 1.80519 1.94134 2.21528 2.27740 2.54953 2.66819 3.07280 3.14261 3.30372 3.41477 3.52722 3.57291 3.71227 3.74443 4.04059 4.10858 4.21878 4.35377 4.35659 4.37716 4.45504 4.56653 4.95646 5.00344 5.27498 6.49272 Molecular weight = 255.09amu Principal moments of inertia in cm(-1) A = 0.038489 B = 0.005917 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.309914 B = 4731.238072 C = 5332.650438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.138 3.862 3 N -0.443 5.443 4 C 0.045 3.955 5 H 0.220 0.780 6 C -0.139 4.139 7 C -0.053 4.053 8 C 0.126 3.874 9 N -0.008 5.008 10 C -0.025 4.025 11 C 0.044 3.956 12 C -0.063 4.063 13 O -0.535 6.535 14 Si 0.931 3.069 15 H -0.218 1.218 16 H -0.307 1.307 17 H -0.220 1.220 18 C 0.077 3.923 19 N -0.503 5.503 20 S 0.329 5.671 21 H 0.119 0.881 22 H 0.125 0.875 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.312 0.688 28 H 0.271 0.729 29 H 0.176 0.824 30 H 0.405 0.595 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.465 0.535 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -0.168 0.554 2.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.161 4.161 3 N -0.152 5.152 4 C -0.070 4.070 5 H 0.235 0.765 6 C -0.198 4.198 7 C -0.187 4.187 8 C -0.036 4.036 9 N 0.234 4.766 10 C -0.150 4.150 11 C 0.033 3.967 12 C -0.175 4.175 13 O -0.343 6.343 14 Si 0.754 3.246 15 H -0.140 1.140 16 H -0.234 1.234 17 H -0.143 1.143 18 C -0.044 4.044 19 N -0.258 5.258 20 S 0.584 5.416 21 H 0.137 0.863 22 H 0.143 0.857 23 H 0.121 0.879 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.158 0.842 27 H 0.327 0.673 28 H 0.286 0.714 29 H 0.193 0.807 30 H 0.256 0.744 31 H 0.241 0.759 32 H 0.243 0.757 33 H 0.330 0.670 Dipole moment (debyes) X Y Z Total from point charges -2.008 -0.504 0.084 2.072 hybrid contribution -0.371 1.035 0.485 1.202 sum -2.379 0.531 0.569 2.503 Atomic orbital electron populations 1.21201 0.81375 1.07614 1.07270 1.29413 1.03090 0.87538 0.96028 1.71445 1.04713 1.29021 1.09995 1.23045 0.87369 0.88750 1.07880 0.76454 1.22164 1.04531 1.02542 0.90612 1.28395 0.99519 1.04964 0.85859 1.23136 0.99278 0.79478 1.01666 1.43896 1.04590 1.05198 1.22954 1.23178 0.88279 0.94549 1.09036 1.24959 0.98067 0.94555 0.79167 1.24881 1.00586 0.95282 0.96772 1.86833 1.94906 1.34546 1.18032 0.85972 0.75341 0.79409 0.83888 1.14029 1.23373 1.14267 1.23678 0.87676 0.80628 1.12376 1.51313 1.03926 1.02077 1.68453 1.83561 0.92665 1.14261 1.51070 0.86288 0.85698 0.87909 0.90940 0.90067 0.84191 0.67303 0.71402 0.80692 0.74361 0.75859 0.75729 0.66985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 7.61 10.50 71.23 0.75 8.36 16 2 C 0.14 -9.72 7.65 88.65 0.68 -9.05 16 3 N -0.44 29.73 10.59 -321.41 -3.40 26.32 16 4 C 0.04 -3.47 3.91 44.63 0.17 -3.29 16 5 H 0.22 -17.82 8.14 -2.39 -0.02 -17.84 16 6 C -0.14 10.39 9.37 71.98 0.67 11.07 16 7 C -0.05 4.59 5.88 25.92 0.15 4.74 16 8 C 0.13 -12.01 10.41 84.80 0.88 -11.13 16 9 N -0.01 0.78 3.50 -196.56 -0.69 0.09 16 10 C -0.03 2.31 9.56 83.05 0.79 3.10 16 11 C 0.04 -3.88 5.78 -17.39 -0.10 -3.98 16 12 C -0.06 4.82 3.07 71.24 0.22 5.04 16 13 O -0.53 36.99 12.88 -148.98 -1.92 35.07 16 14 Si 0.93 -62.17 25.86 68.60 1.77 -60.39 16 15 H -0.22 15.07 7.11 99.48 0.71 15.77 16 16 H -0.31 15.21 7.11 99.48 0.71 15.92 16 17 H -0.22 15.05 7.11 99.48 0.71 15.76 16 18 C 0.08 -7.08 7.98 85.69 0.68 -6.40 16 19 N -0.50 46.51 7.14 -188.20 -1.34 45.16 16 20 S 0.33 -27.34 18.67 -56.49 -1.05 -28.40 16 21 H 0.12 -7.86 8.14 -2.39 -0.02 -7.88 16 22 H 0.12 -8.77 8.14 -2.38 -0.02 -8.79 16 23 H 0.10 -6.30 8.14 -2.39 -0.02 -6.32 16 24 H 0.07 -5.22 8.14 -2.39 -0.02 -5.23 16 25 H 0.08 -5.31 8.14 -2.39 -0.02 -5.33 16 26 H 0.14 -11.54 8.05 -2.39 -0.02 -11.56 16 27 H 0.31 -32.49 8.06 -2.91 -0.02 -32.52 16 28 H 0.27 -25.81 6.02 -2.91 -0.02 -25.83 16 29 H 0.18 -13.63 7.96 -2.39 -0.02 -13.65 16 30 H 0.40 -30.86 8.70 -74.05 -0.64 -31.51 16 31 H 0.23 -21.24 8.14 -2.39 -0.02 -21.26 16 32 H 0.23 -21.59 8.14 -2.39 -0.02 -21.61 16 33 H 0.47 -42.90 4.83 -230.76 -1.11 -44.01 16 Total: 2.00 -187.97 282.83 -1.60 -189.57 By element: Atomic # 1 Polarization: -206.02 SS G_CDS: 0.13 Total: -205.89 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.91 Total: -1.54 kcal Atomic # 7 Polarization: 77.01 SS G_CDS: -5.44 Total: 71.57 kcal Atomic # 8 Polarization: 36.99 SS G_CDS: -1.92 Total: 35.07 kcal Atomic # 14 Polarization: -62.17 SS G_CDS: 1.77 Total: -60.39 kcal Atomic # 16 Polarization: -27.34 SS G_CDS: -1.05 Total: -28.40 kcal Total: -187.97 -1.60 -189.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725674667.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 549.177 kcal (2) G-P(sol) polarization free energy of solvation -187.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 361.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -189.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 359.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds