Wall clock time and date at job start Tue Mar 17 2020 19:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30885 * 121.51090 * 2 1 4 4 S 1.76450 * 109.81853 * 180.02562 * 3 2 1 5 5 C 1.76990 * 96.89586 * 359.97438 * 4 3 2 6 6 H 1.07995 * 127.54360 * 180.02562 * 5 4 3 7 7 C 1.49009 * 121.50838 * 180.02562 * 2 1 3 8 8 H 1.08995 * 109.10309 * 59.57496 * 7 2 1 9 9 C 1.52999 * 109.10399 * 300.48601 * 7 2 1 10 10 N 1.46893 * 109.46979 * 174.99901 * 9 7 2 11 11 H 1.00899 * 109.34979 * 55.18948 * 10 9 7 12 12 C 1.46780 * 109.41374 * 295.37426 * 10 9 7 13 13 C 1.53015 * 109.62376 * 176.74938 * 12 10 9 14 14 C 1.53142 * 109.25634 * 59.96411 * 13 12 10 15 15 C 1.53143 * 109.08390 * 303.06592 * 14 13 12 16 16 H 1.08997 * 109.54640 * 296.98169 * 15 14 13 17 17 C 1.52993 * 109.51103 * 176.86457 * 15 14 13 18 18 O 1.42903 * 109.47376 * 300.22602 * 17 15 14 19 19 Si 1.86301 * 109.46823 * 60.22411 * 17 15 14 20 20 H 1.48506 * 109.47302 * 299.99851 * 19 17 15 21 21 H 1.48503 * 109.47334 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47376 * 59.99981 * 19 17 15 23 23 C 1.46784 * 109.41004 * 174.99958 * 10 9 7 24 24 H 1.09010 * 109.46954 * 269.97791 * 1 2 3 25 25 H 1.08998 * 109.47266 * 29.97524 * 1 2 3 26 26 H 1.09000 * 109.47147 * 149.97965 * 1 2 3 27 27 H 1.08003 * 125.08687 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47098 * 54.99947 * 9 7 2 29 29 H 1.08998 * 109.47083 * 295.00347 * 9 7 2 30 30 H 1.09002 * 109.44166 * 296.79189 * 12 10 9 31 31 H 1.09001 * 109.44636 * 56.73164 * 12 10 9 32 32 H 1.09000 * 109.51083 * 179.89844 * 13 12 10 33 33 H 1.09000 * 109.50615 * 299.98566 * 13 12 10 34 34 H 1.09003 * 109.53833 * 183.18968 * 14 13 12 35 35 H 1.08999 * 109.53516 * 62.94772 * 14 13 12 36 36 H 1.09002 * 109.47726 * 180.22313 * 17 15 14 37 37 H 0.96698 * 113.99836 * 59.99909 * 18 17 15 38 38 H 1.09003 * 109.44734 * 63.20695 * 23 10 9 39 39 H 1.09003 * 109.44893 * 303.30091 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1910 1.1158 0.0000 4 16 3.9189 0.7583 -0.0007 5 6 3.7709 -1.0054 -0.0003 6 1 4.5692 -1.7328 -0.0002 7 6 2.2857 -1.2704 -0.0006 8 1 2.0275 -1.8467 -0.8889 9 6 1.9221 -2.0812 1.2449 10 7 2.5937 -3.3866 1.1927 11 1 3.5867 -3.2474 1.0806 12 6 2.0774 -4.1556 0.0540 13 6 2.8307 -5.4831 -0.0533 14 6 2.6311 -6.2829 1.2373 15 6 3.1046 -5.4415 2.4260 16 1 4.1726 -5.2454 2.3316 17 6 2.8375 -6.2000 3.7276 18 8 1.4373 -6.4584 3.8496 19 14 3.7675 -7.8141 3.7076 20 1 3.3129 -8.6332 2.5552 21 1 3.5088 -8.5502 4.9712 22 1 5.2225 -7.5457 3.5808 23 6 2.3411 -4.1154 2.4415 24 1 -0.3633 -0.0004 1.0278 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.7621 2.1070 0.0004 28 1 0.8427 -2.2290 1.2799 29 1 2.2440 -1.5423 2.1360 30 1 1.0152 -4.3519 0.2005 31 1 2.2177 -3.5840 -0.8634 32 1 2.4447 -6.0534 -0.8983 33 1 3.8929 -5.2880 -0.2008 34 1 3.2116 -7.2042 1.1887 35 1 1.5746 -6.5223 1.3580 36 1 3.1711 -5.5989 4.5735 37 1 1.0712 -6.9898 3.1295 38 1 1.2733 -4.3126 2.5371 39 1 2.6756 -3.5140 3.2868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725678552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 19:11:21 Heat of formation + Delta-G solvation = 38.160443 kcal Electronic energy + Delta-G solvation = -18404.768356 eV Core-core repulsion = 15749.324047 eV Total energy + Delta-G solvation = -2655.444309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33336 -39.31018 -37.38328 -35.56011 -33.48607 -30.87677 -28.43665 -27.91566 -26.69564 -25.46447 -24.29095 -22.30486 -21.67486 -19.18695 -18.92227 -18.40184 -17.97806 -17.59414 -17.00241 -16.76932 -16.58836 -15.70036 -15.28589 -15.12766 -14.95923 -14.46445 -14.33315 -13.96676 -13.86072 -13.65296 -13.33262 -13.08496 -12.92031 -12.71276 -12.62455 -12.50493 -12.24283 -11.98324 -11.93787 -11.58669 -11.32334 -10.92195 -10.35627 -9.57639 -7.97836 -5.19787 0.53983 0.76291 1.04044 1.14692 1.57701 1.83499 2.37940 2.39811 2.44426 2.55361 2.74169 2.88158 3.00454 3.18330 3.30195 3.33020 3.44600 3.51250 3.65057 3.81098 3.86687 3.97030 4.02106 4.15701 4.17525 4.25090 4.32154 4.33975 4.43057 4.66909 4.73227 4.98589 5.04715 5.08782 5.32368 5.62447 5.97232 6.11085 6.35394 6.62457 7.20937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.205 4.205 3 C -0.140 4.140 4 S -0.091 6.091 5 C -0.799 4.799 6 H 0.103 0.897 7 C 0.093 3.907 8 H 0.010 0.990 9 C -0.010 4.010 10 N -0.366 5.366 11 H 0.426 0.574 12 C -0.006 4.006 13 C -0.139 4.139 14 C -0.148 4.148 15 C -0.141 4.141 16 H 0.105 0.895 17 C -0.111 4.111 18 O -0.540 6.540 19 Si 0.944 3.056 20 H -0.249 1.249 21 H -0.248 1.248 22 H -0.248 1.248 23 C 0.005 3.995 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.133 0.867 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.375 0.625 38 H 0.124 0.876 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 -12.645 3.819 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.224 4.224 3 C -0.274 4.274 4 S 0.162 5.838 5 C -0.928 4.928 6 H 0.121 0.879 7 C 0.073 3.927 8 H 0.027 0.973 9 C -0.132 4.132 10 N 0.056 4.944 11 H 0.264 0.736 12 C -0.128 4.128 13 C -0.177 4.177 14 C -0.185 4.185 15 C -0.160 4.160 16 H 0.123 0.877 17 C -0.223 4.223 18 O -0.345 6.345 19 Si 0.765 3.235 20 H -0.172 1.172 21 H -0.171 1.171 22 H -0.171 1.171 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.223 0.777 38 H 0.142 0.858 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.466 -12.326 4.383 13.312 hybrid contribution -1.205 -0.627 -0.513 1.453 sum -3.671 -12.953 3.870 14.009 Atomic orbital electron populations 1.20437 0.92559 1.01349 1.00395 1.20839 0.94643 0.94192 1.12775 1.24649 0.98545 0.99728 1.04463 1.82759 1.03406 1.12042 1.85630 1.24513 0.91223 0.89115 1.87903 0.87891 1.17757 0.94799 0.91223 0.88951 0.97290 1.25004 0.97315 0.80747 1.10139 1.45198 1.20524 1.15697 1.13029 0.73582 1.23694 1.02106 0.94966 0.92076 1.21988 1.02254 0.93911 0.99530 1.22085 1.03505 0.99745 0.93137 1.22219 1.02051 0.94239 0.97523 0.87670 1.26032 0.88628 1.08883 0.98729 1.86573 1.20952 1.75588 1.51425 0.85725 0.79568 0.76178 0.81989 1.17234 1.17090 1.17141 1.23691 1.06076 0.94973 0.87063 0.93091 0.92617 0.93195 0.84964 0.89453 0.87302 0.86735 0.84653 0.87592 0.89450 0.89027 0.89869 0.86133 0.77697 0.85796 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.22 9.45 36.00 0.34 0.12 16 2 C -0.20 -1.20 5.38 -101.85 -0.55 -1.75 16 3 C -0.14 -1.18 10.81 29.05 0.31 -0.87 16 4 S -0.09 -1.00 22.98 -107.50 -2.47 -3.47 16 5 C -0.80 -6.75 10.69 36.09 0.39 -6.37 16 6 H 0.10 0.86 7.46 -52.49 -0.39 0.47 16 7 C 0.09 0.36 2.44 -93.65 -0.23 0.13 16 8 H 0.01 0.04 6.11 -51.93 -0.32 -0.28 16 9 C -0.01 0.03 4.00 -3.83 -0.02 0.01 16 10 N -0.37 2.71 0.39 -234.81 -0.09 2.62 16 11 H 0.43 -2.73 6.79 -39.29 -0.27 -3.00 16 12 C -0.01 0.05 4.90 -3.88 -0.02 0.03 16 13 C -0.14 1.29 6.02 -26.65 -0.16 1.13 16 14 C -0.15 1.43 4.50 -26.58 -0.12 1.31 16 15 C -0.14 1.33 1.84 -90.54 -0.17 1.17 16 16 H 0.11 -1.05 7.96 -51.93 -0.41 -1.47 16 17 C -0.11 0.87 2.46 37.15 0.09 0.96 16 18 O -0.54 3.57 12.17 -35.23 -0.43 3.14 16 19 Si 0.94 -5.51 26.38 -169.99 -4.48 -9.99 16 20 H -0.25 1.44 6.44 56.52 0.36 1.80 16 21 H -0.25 0.73 7.11 56.52 0.40 1.13 16 22 H -0.25 1.11 7.11 56.52 0.40 1.51 16 23 C 0.00 -0.04 4.26 -3.88 -0.02 -0.06 16 24 H 0.05 0.06 8.14 -51.92 -0.42 -0.36 16 25 H 0.05 0.17 8.10 -51.93 -0.42 -0.25 16 26 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.09 -0.38 7.58 -51.93 -0.39 -0.78 16 29 H 0.11 -0.15 8.04 -51.93 -0.42 -0.57 16 30 H 0.11 -1.12 8.09 -51.93 -0.42 -1.54 16 31 H 0.14 -0.79 6.02 -51.93 -0.31 -1.10 16 32 H 0.11 -0.99 8.14 -51.93 -0.42 -1.42 16 33 H 0.09 -0.76 8.14 -51.93 -0.42 -1.19 16 34 H 0.09 -0.83 5.76 -51.93 -0.30 -1.13 16 35 H 0.08 -0.90 6.64 -51.93 -0.34 -1.24 16 36 H 0.12 -0.98 7.96 -51.93 -0.41 -1.39 16 37 H 0.37 -3.59 6.92 45.56 0.32 -3.27 16 38 H 0.12 -1.22 7.63 -51.93 -0.40 -1.61 16 39 H 0.12 -1.16 8.05 -51.93 -0.42 -1.57 16 LS Contribution 299.06 15.07 4.51 4.51 Total: 0.00 -15.56 299.06 -8.97 -24.53 By element: Atomic # 1 Polarization: -11.29 SS G_CDS: -5.86 Total: -17.14 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.14 Total: -4.19 kcal Atomic # 7 Polarization: 2.71 SS G_CDS: -0.09 Total: 2.62 kcal Atomic # 8 Polarization: 3.57 SS G_CDS: -0.43 Total: 3.14 kcal Atomic # 14 Polarization: -5.51 SS G_CDS: -4.48 Total: -9.99 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.47 Total: -3.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -15.56 -8.97 -24.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725678552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.691 kcal (2) G-P(sol) polarization free energy of solvation -15.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds