Wall clock time and date at job start Tue Mar 17 2020 19:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30885 * 121.51090 * 2 1 4 4 S 1.76450 * 109.81853 * 180.02562 * 3 2 1 5 5 C 1.76990 * 96.89586 * 359.97438 * 4 3 2 6 6 H 1.07995 * 127.54360 * 180.02562 * 5 4 3 7 7 C 1.49009 * 121.50838 * 180.02562 * 2 1 3 8 8 H 1.08995 * 109.10309 * 59.57496 * 7 2 1 9 9 C 1.52999 * 109.10399 * 300.48601 * 7 2 1 10 10 N 1.46893 * 109.46979 * 174.99901 * 9 7 2 11 11 H 1.00899 * 109.34979 * 55.18948 * 10 9 7 12 12 C 1.46780 * 109.41374 * 295.37426 * 10 9 7 13 13 C 1.53015 * 109.62376 * 176.74938 * 12 10 9 14 14 C 1.53142 * 109.25634 * 59.96411 * 13 12 10 15 15 C 1.53143 * 109.08390 * 303.06592 * 14 13 12 16 16 H 1.08997 * 109.54640 * 296.98169 * 15 14 13 17 17 C 1.52993 * 109.51103 * 176.86457 * 15 14 13 18 18 O 1.42903 * 109.47376 * 300.22602 * 17 15 14 19 19 Si 1.86301 * 109.46823 * 60.22411 * 17 15 14 20 20 H 1.48506 * 109.47302 * 299.99851 * 19 17 15 21 21 H 1.48503 * 109.47334 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47376 * 59.99981 * 19 17 15 23 23 C 1.46784 * 109.41004 * 174.99958 * 10 9 7 24 24 H 1.09010 * 109.46954 * 269.97791 * 1 2 3 25 25 H 1.08998 * 109.47266 * 29.97524 * 1 2 3 26 26 H 1.09000 * 109.47147 * 149.97965 * 1 2 3 27 27 H 1.08003 * 125.08687 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47098 * 54.99947 * 9 7 2 29 29 H 1.08998 * 109.47083 * 295.00347 * 9 7 2 30 30 H 1.09002 * 109.44166 * 296.79189 * 12 10 9 31 31 H 1.09001 * 109.44636 * 56.73164 * 12 10 9 32 32 H 1.09000 * 109.51083 * 179.89844 * 13 12 10 33 33 H 1.09000 * 109.50615 * 299.98566 * 13 12 10 34 34 H 1.09003 * 109.53833 * 183.18968 * 14 13 12 35 35 H 1.08999 * 109.53516 * 62.94772 * 14 13 12 36 36 H 1.09002 * 109.47726 * 180.22313 * 17 15 14 37 37 H 0.96698 * 113.99836 * 59.99909 * 18 17 15 38 38 H 1.09003 * 109.44734 * 63.20695 * 23 10 9 39 39 H 1.09003 * 109.44893 * 303.30091 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1910 1.1158 0.0000 4 16 3.9189 0.7583 -0.0007 5 6 3.7709 -1.0054 -0.0003 6 1 4.5692 -1.7328 -0.0002 7 6 2.2857 -1.2704 -0.0006 8 1 2.0275 -1.8467 -0.8889 9 6 1.9221 -2.0812 1.2449 10 7 2.5937 -3.3866 1.1927 11 1 3.5867 -3.2474 1.0806 12 6 2.0774 -4.1556 0.0540 13 6 2.8307 -5.4831 -0.0533 14 6 2.6311 -6.2829 1.2373 15 6 3.1046 -5.4415 2.4260 16 1 4.1726 -5.2454 2.3316 17 6 2.8375 -6.2000 3.7276 18 8 1.4373 -6.4584 3.8496 19 14 3.7675 -7.8141 3.7076 20 1 3.3129 -8.6332 2.5552 21 1 3.5088 -8.5502 4.9712 22 1 5.2225 -7.5457 3.5808 23 6 2.3411 -4.1154 2.4415 24 1 -0.3633 -0.0004 1.0278 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.7621 2.1070 0.0004 28 1 0.8427 -2.2290 1.2799 29 1 2.2440 -1.5423 2.1360 30 1 1.0152 -4.3519 0.2005 31 1 2.2177 -3.5840 -0.8634 32 1 2.4447 -6.0534 -0.8983 33 1 3.8929 -5.2880 -0.2008 34 1 3.2116 -7.2042 1.1887 35 1 1.5746 -6.5223 1.3580 36 1 3.1711 -5.5989 4.5735 37 1 1.0712 -6.9898 3.1295 38 1 1.2733 -4.3126 2.5371 39 1 2.6756 -3.5140 3.2868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725678552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 19:11:21 Heat of formation + Delta-G solvation = 32.902398 kcal Electronic energy + Delta-G solvation = -18404.996362 eV Core-core repulsion = 15749.324047 eV Total energy + Delta-G solvation = -2655.672314 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.77252 -38.85478 -37.48032 -35.08337 -32.78820 -30.96650 -28.67508 -27.27057 -26.40450 -25.21423 -23.67540 -22.10637 -21.52003 -19.10645 -18.40507 -18.19255 -17.66096 -16.99507 -16.96111 -16.38821 -16.09740 -15.32931 -15.08486 -14.68651 -14.50531 -14.28895 -14.00912 -13.68844 -13.53845 -13.43096 -13.18579 -12.79106 -12.51239 -12.45834 -12.27337 -12.15703 -11.97043 -11.84707 -11.72085 -11.59941 -11.31707 -10.87873 -10.33546 -10.18942 -8.67415 -5.81193 1.02435 1.26425 1.39718 1.46310 1.54656 1.78604 2.00692 2.99037 3.02607 3.20764 3.32025 3.45420 3.56324 3.64616 3.89269 3.93292 3.99494 4.12263 4.24651 4.29430 4.33377 4.40991 4.45448 4.59655 4.63275 4.68536 4.71514 4.75677 4.81632 4.88637 4.91037 5.04957 5.05640 5.12008 5.22124 5.38502 5.67300 5.86647 6.09867 6.70989 6.74853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.172 4.172 3 C -0.171 4.171 4 S -0.209 6.209 5 C -0.828 4.828 6 H 0.092 0.908 7 C 0.086 3.914 8 H 0.019 0.981 9 C 0.019 3.981 10 N -0.360 5.360 11 H 0.422 0.578 12 C -0.004 4.004 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.137 4.137 16 H 0.110 0.890 17 C -0.089 4.089 18 O -0.552 6.552 19 Si 0.960 3.040 20 H -0.245 1.245 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.010 3.990 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.388 0.612 38 H 0.144 0.856 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 -14.252 4.257 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.190 4.190 3 C -0.304 4.304 4 S 0.039 5.961 5 C -0.956 4.956 6 H 0.110 0.890 7 C 0.066 3.934 8 H 0.036 0.964 9 C -0.104 4.104 10 N 0.063 4.937 11 H 0.259 0.741 12 C -0.126 4.126 13 C -0.171 4.171 14 C -0.185 4.185 15 C -0.156 4.156 16 H 0.128 0.872 17 C -0.203 4.203 18 O -0.360 6.360 19 Si 0.788 3.212 20 H -0.168 1.168 21 H -0.219 1.219 22 H -0.196 1.196 23 C -0.111 4.111 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.239 0.761 38 H 0.162 0.838 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.625 -13.973 4.795 15.808 hybrid contribution -0.290 -0.246 -0.693 0.790 sum -5.914 -14.219 4.102 15.937 Atomic orbital electron populations 1.20568 0.89215 1.02638 1.02484 1.21648 0.96972 0.94177 1.06171 1.24689 0.96210 1.01167 1.08327 1.83050 1.07911 1.16324 1.88786 1.24484 0.93500 0.86105 1.91542 0.89026 1.17694 0.91979 0.91541 0.92202 0.96420 1.24033 0.99352 0.82013 1.04997 1.45054 1.19857 1.14204 1.14593 0.74126 1.23755 1.03827 0.94522 0.90497 1.21927 1.01620 0.93486 1.00047 1.22116 1.04757 0.99183 0.92439 1.22160 1.02604 0.94122 0.96717 0.87223 1.25685 0.87906 1.06779 0.99889 1.86554 1.20947 1.75884 1.52603 0.85553 0.78533 0.77611 0.79546 1.16849 1.21899 1.19619 1.23756 1.07194 0.94388 0.85772 0.90364 0.92963 0.90364 0.84449 0.85824 0.88165 0.83860 0.87195 0.87088 0.90475 0.89657 0.87756 0.85504 0.76137 0.83842 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.14 9.45 71.23 0.67 0.53 16 2 C -0.17 -1.87 5.38 -16.90 -0.09 -1.96 16 3 C -0.17 -3.17 10.81 67.90 0.73 -2.44 16 4 S -0.21 -5.38 22.98 -56.49 -1.30 -6.68 16 5 C -0.83 -15.85 10.69 71.29 0.76 -15.09 16 6 H 0.09 1.82 7.46 -2.91 -0.02 1.80 16 7 C 0.09 0.60 2.44 -12.76 -0.03 0.57 16 8 H 0.02 0.12 6.11 -2.39 -0.01 0.10 16 9 C 0.02 -0.16 4.00 86.30 0.34 0.19 16 10 N -0.36 6.12 0.39 -896.79 -0.35 5.77 16 11 H 0.42 -5.65 6.79 -89.69 -0.61 -6.26 16 12 C 0.00 0.08 4.90 86.33 0.42 0.50 16 13 C -0.13 2.70 6.02 30.65 0.18 2.89 16 14 C -0.15 3.23 4.50 30.69 0.14 3.37 16 15 C -0.14 2.88 1.84 -10.74 -0.02 2.86 16 16 H 0.11 -2.34 7.96 -2.39 -0.02 -2.36 16 17 C -0.09 1.54 2.46 71.98 0.18 1.72 16 18 O -0.55 8.77 12.17 -148.98 -1.81 6.96 16 19 Si 0.96 -10.78 26.38 68.60 1.81 -8.97 16 20 H -0.25 2.93 6.44 99.48 0.64 3.57 16 21 H -0.29 1.07 7.11 99.48 0.71 1.78 16 22 H -0.27 2.03 7.11 99.48 0.71 2.74 16 23 C 0.01 -0.23 4.26 86.33 0.37 0.14 16 24 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 25 H 0.05 0.18 8.10 -2.39 -0.02 0.16 16 26 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.12 -1.78 7.58 -2.38 -0.02 -1.80 16 29 H 0.10 -0.49 8.04 -2.39 -0.02 -0.51 16 30 H 0.14 -3.50 8.09 -2.39 -0.02 -3.52 16 31 H 0.11 -1.44 6.02 -2.39 -0.01 -1.45 16 32 H 0.11 -2.29 8.14 -2.39 -0.02 -2.31 16 33 H 0.08 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.08 -1.69 5.76 -2.39 -0.01 -1.70 16 35 H 0.10 -2.67 6.64 -2.39 -0.02 -2.69 16 36 H 0.13 -2.29 7.96 -2.39 -0.02 -2.31 16 37 H 0.39 -8.64 6.92 -74.06 -0.51 -9.16 16 38 H 0.14 -3.56 7.63 -2.39 -0.02 -3.58 16 39 H 0.13 -2.81 8.05 -2.39 -0.02 -2.83 16 Total: 0.00 -42.28 299.06 2.61 -39.67 By element: Atomic # 1 Polarization: -30.62 SS G_CDS: 0.60 Total: -30.03 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.66 Total: -6.72 kcal Atomic # 7 Polarization: 6.12 SS G_CDS: -0.35 Total: 5.77 kcal Atomic # 8 Polarization: 8.77 SS G_CDS: -1.81 Total: 6.96 kcal Atomic # 14 Polarization: -10.78 SS G_CDS: 1.81 Total: -8.97 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.30 Total: -6.68 kcal Total: -42.28 2.61 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725678552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.571 kcal (2) G-P(sol) polarization free energy of solvation -42.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds